Experiment set3IT061 for Agrobacterium fabrum C58

Compare to:

L-Valine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.3 -3.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0679 -4.7 -7.9 ATP phosphoribosyltransferase compare
Atu3707 -4.5 -6.0 phosphoserine aminotransferase compare
Atu0043 -4.5 -4.3 imidazoleglycerol-phosphate dehydratase compare
Atu3706 -3.7 -8.9 D-3-phosphoglycerate dehydrogenase compare
Atu2040 -3.6 -5.3 phosphoserine phosphatase compare
Atu0041 -3.5 -4.0 glutamine amidotransferase compare
Atu1359 -3.5 -2.0 dnaK deletion suppressor protein compare
Atu1688 -3.4 -11.2 indole-3-glycerol-phosphate synthase compare
Atu3469 -3.3 -4.5 phosphoglyceromutase compare
Atu2289 -3.3 -16.5 anthranilate synthase component I and II compare
Atu2790 -3.3 -4.1 3-isopropylmalate dehydratase, small subunit compare
Atu0678 -3.3 -8.5 histidyl-tRNA synthetase compare
Atu3739 -3.2 -4.7 phosphoglycerate kinase compare
Atu0017 -3.2 -5.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0537 -3.2 -8.0 histidinol dehydrogenase compare
Atu2791 -3.2 -10.9 3-isopropylmalate dehydrogenase compare
Atu1687 -3.2 -11.3 anthranilate phosphoribosyltransferase compare
Atu0035 -3.1 -9.6 phosphoenolpyruvate carboxykinase compare
Atu1844 -2.9 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu3740 -2.9 -10.7 fructose bisphosphate aldolase compare
Atu5430 -2.9 -2.0 hypothetical protein compare
Atu0039 -2.8 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu0400 -2.8 -4.8 orotate phosphoribosyltransferase compare
Atu2036 -2.8 -15.9 acetolactate synthase III, large subunit compare
Atu1308 -2.8 -6.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1750 -2.7 -5.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu1205 -2.6 -15.1 threonine dehydratase compare
Atu0298 -2.6 -8.4 orotidine 5 compare
Atu2709 -2.6 -15.1 3-isopropylmalate dehydratase, large subunit compare
Atu1446 -2.6 -3.6 two component response regulator compare
Atu2650 -2.5 -14.4 glycerol-3-phosphate dehydrogenase compare
Atu0871 -2.5 -6.5 branched-chain-amino-acid aminotransferase compare
Atu0030 -2.5 -2.3 phosphocarrier protein HPr compare
Atu4773 -2.4 -3.2 two component response regulator compare
Atu1620 -2.3 -14.3 triosephosphate isomerase compare
Atu1141 -2.3 -7.2 Phosphoribosylglycinamide synthetase compare
Atu0399 -2.3 -7.4 dihydroorotase compare
Atu1307 -2.3 -5.4 dihydroorotase compare
Atu2015 -2.2 -10.2 aminotransferase compare
Atu0486 -2.1 -7.5 dihydroorotate dehydrogenase compare
Atu4505 -2.1 -12.2 LacI family transcriptional regulator compare
Atu3754 -2.1 -6.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3730 -2.0 -2.7 hypothetical protein compare
Atu4674 -2.0 -11.7 GntR family transcriptional regulator compare
Atu5045 -2.0 -1.6 hypothetical protein compare
Atu0332 -2.0 -10.7 RNA polymerase sigma-54 factor compare
Atu4166 -2.0 -3.8 UDP-glucose 4-epimerase compare
Atu1588 -2.0 -8.6 homoserine dehydrogenase compare
Atu0040 -1.9 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3885 -1.9 -8.5 inositol monophosphatase compare
Atu0490 -1.9 -7.0 hypothetical protein compare
Atu1075 -1.8 -6.1 amidophosphoribosyltransferase compare
Atu0038 -1.7 -6.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2264 -1.7 -9.5 2-isopropylmalate synthase compare
Atu1445 -1.7 -6.7 two component sensor kinase compare
Atu0026 -1.7 -1.6 hypothetical protein compare
Atu4711 -1.5 -7.4 two component sensor kinase compare
Atu8052 -1.5 -1.2 hypothetical protein compare
Atu1140 -1.5 -4.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu5158 -1.4 -2.4 hypothetical protein compare
Atu5501 -1.4 -1.8 hypothetical protein compare
Atu8135 -1.4 -6.6 hypothetical protein compare
Atu0647 -1.4 -4.5 phosphoribosylamine--glycine ligase compare
Atu4896 -1.4 -2.4 acetyltransferase compare
Atu0432 -1.4 -6.1 O-succinylhomoserine sulfhydrylase compare
Atu3496 -1.3 -2.0 hypothetical protein compare
Atu2163 -1.3 -2.1 hypothetical protein compare
Atu2684 -1.3 -2.2 hypothetical protein compare
Atu2207 -1.3 -3.0 two component sensor kinase compare
Atu0723 -1.3 -1.5 FAD dependent oxidoreductase compare
Atu0837 -1.3 -5.7 transcriptional regulator, MarR family compare
Atu1850 -1.3 -2.8 phosphoribosylformylglycinamidine synthetase II compare
Atu3293 -1.2 -5.8 D-amino acid dehydrogenase small subunit compare
Atu0031 -1.2 -1.6 PTS system, IIA component compare
Atu2115 -1.2 -7.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2747 -1.2 -8.4 hypothetical protein compare
Atu4616 -1.2 -1.9 dTDP-4-dehydrorhamnose reductase compare
Atu3763 -1.2 -1.7 hypothetical protein compare
Atu0876 -1.1 -1.3 superoxide dismutase compare
Atu2432 -1.1 -1.8 hypothetical protein compare
Atu1714 -1.1 -1.9 exonuclease III compare
Atu3755 -1.1 -4.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2569 -1.1 -7.8 thiamine biosynthesis protein compare
Atu1254 -1.1 -2.0 transcriptional regulator, ArsR family compare
Atu2640 -1.1 -3.7 hypothetical protein compare
Atu3289 -1.0 -3.0 thiamine-phosphate pyrophosphorylase compare
Atu3353 -1.0 -5.9 mannose-1-phosphate guanylyltransferase compare
Atu2439 -1.0 -1.7 hypothetical protein compare
Atu2442 -1.0 -3.3 hypothetical protein compare
Atu6036 -1.0 -0.5 entry-exclusion protein compare
Atu1028 -1.0 -1.9 hypothetical protein compare
Atu4897 -1.0 -1.6 hypothetical protein compare
Atu2209 -1.0 -3.3 pyrroline-5-carboxylate reductase compare
Atu4890 -0.9 -1.7 IS426 transposase compare
Atu5146 -0.9 -1.0 hypothetical protein compare
Atu1589 -0.9 -5.4 aminotransferase, class I compare
Atu1163 -0.9 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1845 -0.9 -2.2 phosphoribosylformylglycinamidine synthase I compare
Atu2183 -0.9 -4.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4618 -0.9 -6.8 dTDP-rhamnose-3,5-epimerase compare
Atu3290 -0.9 -5.3 phosphomethylpyrimidine kinase compare
Atu2376 -0.9 -1.0 hypothetical protein compare
Atu0422 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu1774 -0.9 -4.5 ABC transporter, substrate binding protein (peptide) compare
Atu0941 -0.9 -1.0 hypothetical protein compare
Atu4613 -0.9 -6.2 glycosyltransferase compare
Atu2777 -0.9 -6.7 hypothetical protein compare
Atu2800 -0.8 -2.0 precorrin-3B C17-methyltransferase compare
Atu0346 -0.8 -1.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2123 -0.8 -2.5 methylenetetrahydrofolate reductase compare
Atu3311 -0.8 -6.4 phosphomannose isomerase compare
Atu4317 -0.8 -3.3 TetR family transcriptional regulator compare
Atu0986 -0.8 -1.2 hypothetical protein compare
Atu4614 -0.8 -4.5 glycosyltransferase compare
Atu4617 -0.8 -5.9 dTDP-D-glucose-4,6-dehydratase compare
Atu2718 -0.8 -3.6 homoserine O-succinyltransferase compare
Atu4615 -0.8 -4.4 glucose-1-phosphate thymidylyltransferase compare
Atu0463 -0.8 -2.2 hypothetical protein compare
Atu0819 -0.8 -2.3 hypothetical protein compare
Atu2155 -0.8 -6.3 methionine synthase compare
Atu3120 -0.8 -0.6 hypothetical protein compare
Atu3009 -0.8 -1.0 exopolysaccharide production protein compare
Atu0322 -0.7 -2.8 enoyl CoA hydratase compare
Atu0524 -0.7 -3.3 transcriptional regulator, LuxR family compare
Atu6158 -0.7 -2.6 conserved hypothetical protein compare
Atu0498 -0.7 -4.4 hypothetical protein compare
Atu0375 -0.7 -1.4 small heat shock protein compare
Atu1686 -0.7 -5.7 peptidyl-prolyl cis-trans isomerse D compare
Atu3288 -0.7 -2.3 hydroxyethylthiazole kinase compare
Atu8088 -0.7 -1.0 hypothetical protein compare
Atu6149 -0.7 -1.6 hypothetical protein compare
Atu5109 -0.7 -1.6 conjugal transfer protein compare
Atu0188 -0.7 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu4873 -0.7 -3.4 TetR family transcriptional regulator compare
Atu5010 -0.7 -1.2 hypothetical protein compare
Atu1241 -0.7 -2.5 hypothetical protein compare
Atu0361 -0.7 -1.8 transcriptional regulator compare
Atu1456 -0.7 -4.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0357 -0.7 -3.1 phosphate starvation inducible protein compare
Atu8025 -0.7 -1.1 hypothetical protein compare
Atu0190 -0.7 -3.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0544 -0.6 -1.4 hypothetical protein compare
Atu6106 -0.6 -1.0 conserved hypothetical protein compare
Atu1344 -0.6 -1.2 hypothetical protein compare
Atu0690 -0.6 -1.4 hypothetical protein compare
Atu0895 -0.6 -2.0 ABC transporter, substrate binding protein compare
Atu3866 -0.6 -4.9 hypothetical protein compare
Atu3908 -0.6 -4.4 GntR family transcriptional regulator compare
Atu2267 -0.6 -3.5 hypothetical protein compare
Atu3121 -0.6 -1.0 cold shock protein compare
Atu6159 -0.6 -1.1 hypothetical protein compare
Atu3468 -0.6 -0.7 hypothetical protein compare
Atu2428 -0.6 -3.6 exopolysaccharide production protein PssB compare
Atu1577 -0.6 -3.6 ABC transporter, substrate binding protein (amino acid) compare
Atu4502 -0.6 -3.2 cobalamin synthesis protein compare
Atu1466 -0.6 -1.4 hypothetical protein compare
Atu3075 -0.6 -2.6 TetR family transcriptional regulator compare
Atu1689 -0.6 -1.3 molybdenum cofactor biosynthesis protein C compare
Atu1457 -0.6 -1.6 hypothetical protein compare
Atu0784 -0.6 -1.7 hypothetical protein compare
Atu0769 -0.6 -1.3 protoheme IX farnesyltransferase compare
Atu2017 -0.6 -0.8 hypothetical protein compare
Atu4055 -0.6 -3.0 endo-1,3-1,4-beta-glycanase compare
Atu4406 -0.6 -1.8 periplasmic nitrate reductase, ferredoxin-like protein compare
Atu0525 -0.6 -2.8 transcriptional regulator, LuxR family compare
Atu6145 -0.6 -3.1 arabinose phosphate phosphatase compare
Atu8012 -0.6 -1.2 hypothetical protein compare
Atu0977 -0.6 -2.6 serine protease DO-like protease compare
Atu8055 -0.6 -0.8 hypothetical protein compare
Atu8130 -0.6 -3.7 hypothetical protein compare
Atu0115 -0.6 -0.7 hypothetical protein compare
Atu6155 -0.6 -1.8 conserved hypothetical protein compare
Atu3864 -0.6 -2.5 hypothetical protein compare
Atu6064 -0.5 -1.9 haloalkane dehalogenase compare
Atu3799 -0.5 -4.1 GntR family transcriptional regulator compare
Atu3012 -0.5 -1.0 hypothetical protein compare
Atu2352 -0.5 -1.1 hypothetical protein compare
Atu1031 -0.5 -1.8 hypothetical protein compare
Atu4894 -0.5 -2.7 transposase compare
Atu3169 -0.5 -2.5 sorbitol/mannitol ABC transporter permease compare
Atu0149 -0.5 -1.7 enoyl-(acyl-carrier-protein) reductase compare
Atu2554 -0.5 -1.2 lysyl-tRNA synthetase compare
Atu5468 -0.5 -0.9 hypothetical protein compare
Atu0189 -0.5 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu3579 -0.5 -2.1 lactoylglutathione lyase compare
Atu1748 -0.5 -3.3 NIFU-like protein compare
Atu2335 -0.5 -1.4 hypothetical protein compare
Atu0048 -0.5 -3.8 hypothetical protein compare
Atu2057 -0.5 -1.1 DNA helicase II compare
Atu3006 -0.5 -1.8 hypothetical protein compare
Atu1454 -0.5 -2.7 siroheme synthase compare
Atu2020 -0.5 -2.0 transcriptional regulator, TetR family compare
Atu5034 -0.5 -1.1 hypothetical protein compare
Atu1334 -0.5 -2.6 aspartate transaminase compare
Atu6169 -0.5 -1.4 component of type IV secretion system compare
Atu4144 -0.5 -0.7 hypothetical protein compare
Atu3759 -0.5 -1.0 hypothetical protein compare
Atu2396 -0.5 -1.7 urease accessory protein compare
Atu6081 -0.5 -1.9 conserved hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Valine in Agrobacterium fabrum C58

For nitrogen source L-Valine across organisms