Experiment set3IT060 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with S16_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF3566 -2.9 -2.7 major outer membrane lipoprotein compare
GFF1863 -2.7 -1.4 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF2475 -2.2 -2.5 Ribonuclease III (EC 3.1.26.3) compare
GFF3667 -1.8 -1.3 Cytidylate kinase (EC 2.7.4.25) compare
GFF1768 -1.8 -1.1 hypothetical protein compare
GFF3324 -1.7 -1.0 putative periplasmic protein compare
GFF873 -1.7 -1.2 hypothetical protein compare
GFF87 -1.6 -1.7 C4-type zinc finger protein, DksA/TraR family compare
GFF2466 -1.6 -1.0 Sialic acid utilization regulator, RpiR family compare
GFF4774 -1.5 -1.2 FIG074102: hypothetical protein compare
GFF2881 -1.4 -7.1 WzxE protein compare
GFF4601 -1.4 -5.6 Phosphoglucomutase (EC 5.4.2.2) compare
GFF387 -1.4 -3.1 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF1699 -1.4 -1.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF4473 -1.4 -1.4 FIG01046818: hypothetical protein compare
GFF201 -1.4 -1.3 Ferredoxin-like protein FixX compare
GFF1777 -1.4 -2.8 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-) compare
GFF3570 -1.3 -0.8 FIG074102: hypothetical protein compare
GFF773 -1.3 -1.1 probable lipoprotein compare
GFF4126 -1.3 -0.7 FIG01047407: hypothetical protein compare
GFF1750 -1.3 -2.5 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF3558 -1.3 -1.6 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF1554 -1.3 -2.7 Putative transcriptional regulator compare
GFF3599 -1.3 -1.9 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
GFF752 -1.3 -1.3 Inner membrane protein compare
GFF20 -1.3 -3.0 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF1221 -1.2 -1.2 hypothetical protein compare
GFF2431 -1.2 -1.9 Chaperone protein HscA compare
GFF3395 -1.2 -0.8 Putative outer membrane protein compare
GFF824 -1.2 -2.8 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF2880 -1.1 -4.3 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF218 -1.1 -1.5 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF3901 -1.1 -1.8 Phosphomannomutase (EC 5.4.2.8) compare
GFF1641 -1.1 -1.0 hypothetical protein compare
GFF392 -1.1 -1.4 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF2200 -1.1 -2.0 Phage CI-like repressor compare
GFF652 -1.1 -3.7 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF1040 -1.1 -1.0 Putative deoxyribonuclease YjjV compare
GFF1808 -1.1 -2.2 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF2008 -1.0 -1.4 probable membrane protein yjeI compare
GFF2392 -1.0 -1.4 Peptide deformylase (EC 3.5.1.88) compare
GFF2882 -1.0 -4.5 Lipopolysaccharide biosynthesis protein RffA compare
GFF4145 -1.0 -0.9 hypothetical protein compare
GFF4160 -1.0 -2.8 UPF0125 protein yfjF compare
GFF1801 -1.0 -0.7 hypothetical protein compare
GFF4646 -1.0 -5.1 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF3149 -1.0 -5.7 Type I secretion outer membrane protein, TolC precursor compare
GFF4698 -1.0 -2.4 PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69) compare
GFF2864 -1.0 -1.0 Mobile element protein compare
GFF3874 -1.0 -2.2 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) compare
GFF4417 -1.0 -2.0 Methionine ABC transporter ATP-binding protein compare
GFF3886 -1.0 -4.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF3118 -0.9 -3.5 MotA/TolQ/ExbB proton channel family protein compare
GFF2124 -0.9 -3.8 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
GFF3040 -0.9 -4.8 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
GFF3709 -0.9 -1.3 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF4669 -0.9 -1.0 Phage outer membrane lytic protein Rz; Endopeptidase (EC 3.4.-.-) compare
GFF925 -0.9 -1.1 hypothetical protein compare
GFF4462 -0.9 -1.3 Bactoprenol-linked glucose translocase compare
GFF1921 -0.9 -1.3 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF626 -0.9 -0.7 Type IV pilus biogenesis protein PilO compare
GFF2868 -0.9 -0.8 hypothetical protein compare
GFF4484 -0.9 -3.1 Transcriptional regulator, TetR family compare
GFF1559 -0.9 -1.4 hypothetical protein compare
GFF3511 -0.9 -1.0 Membrane-bound metal-dependent hydrolase YdjM, induced during SOS response compare
GFF1396 -0.9 -5.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF741 -0.9 -3.1 D-beta-hydroxybutyrate permease compare
GFF2867 -0.9 -0.7 hypothetical protein compare
GFF880 -0.9 -4.5 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF2655 -0.9 -1.1 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
GFF2733 -0.8 -1.7 Membrane protein YciC, linked to IspA compare
GFF3467 -0.8 -1.7 Putative inner membrane protein compare
GFF3048 -0.8 -2.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
GFF4770 -0.8 -0.9 transposase compare
GFF848 -0.8 -1.6 Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69) compare
GFF2110 -0.8 -3.2 Sigma factor RpoE regulatory protein RseC compare
GFF2493 -0.8 -1.4 FIG01047459: hypothetical protein compare
GFF945 -0.8 -1.5 Aspartate N-acetyltransferase (EC 2.3.1.17) compare
GFF1747 -0.8 -1.0 putative inner membrane protein compare
GFF1715 -0.8 -2.7 Flavoprotein MioC compare
GFF2990 -0.8 -4.2 Thiol:disulfide interchange protein DsbC compare
GFF2484 -0.8 -0.4 FIG00639146: hypothetical protein compare
GFF388 -0.8 -3.8 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF189 -0.8 -3.1 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF3437 -0.8 -2.3 Putative outer membrane lipoprotein compare
GFF2173 -0.8 -2.4 Chromosomal replication initiator protein DnaA compare
GFF713 -0.8 -0.5 FIG01047037: hypothetical protein compare
GFF2973 -0.8 -3.1 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF1315 -0.8 -3.6 FIG003462: membrane protein compare
GFF381 -0.8 -3.2 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF587 -0.8 -2.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF3938 -0.8 -1.4 Ethanolamine utilization protein similar to PduL compare
GFF2490 -0.8 -2.8 Starvation sensing protein RspB compare
GFF4055 -0.8 -1.8 Uncharacterized protein ImpB compare
GFF632 -0.8 -2.6 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) compare
GFF2517 -0.8 -0.5 [NiFe] hydrogenase nickel incorporation HybF-like protein compare
GFF2966 -0.8 -2.3 Transcriptional regulator NanR compare
GFF4535 -0.8 -3.0 Lipid A acylation protein PagP, palmitoyltransferase compare
GFF3054 -0.8 -4.2 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
GFF4647 -0.8 -3.8 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF1521 -0.7 -1.7 rRNA small subunit methyltransferase I compare
GFF3229 -0.7 -0.9 Secreted effector protein compare
GFF4598 -0.7 -1.5 Uncharacterized protein ybfE compare
GFF2202 -0.7 -1.5 hypothetical protein compare
GFF242 -0.7 -1.4 Magnesium and cobalt transport protein CorA compare
GFF2561 -0.7 -1.2 hypothetical protein compare
GFF3628 -0.7 -1.7 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) compare
GFF4315 -0.7 -1.7 Hypothetical lipoprotein yajI compare
GFF4286 -0.7 -3.3 Shikimate kinase III (EC 2.7.1.71) compare
GFF1076 -0.7 -1.5 Aerobic respiration control protein arcA compare
GFF716 -0.7 -2.7 L,D-transpeptidase YbiS compare
GFF4619 -0.7 -0.8 hypothetical protein compare
GFF32 -0.7 -0.6 Rho-specific inhibitor of transcription termination (YaeO) compare
GFF4291 -0.7 -2.7 Glucokinase, ROK family (EC 2.7.1.2) compare
GFF1612 -0.7 -1.0 FIG01046582: hypothetical protein compare
GFF1270 -0.7 -2.1 DNA polymerase III theta subunit (EC 2.7.7.7) compare
GFF668 -0.7 -1.4 Histidine ammonia-lyase (EC 4.3.1.3) compare
GFF3595 -0.7 -1.0 Secretion system effector SseG compare
GFF1760 -0.7 -2.0 Putative permease compare
GFF2846 -0.7 -2.7 ProQ: influences osmotic activation of compatible solute ProP compare
GFF2808 -0.7 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF1013 -0.7 -2.7 PTS system, mannose-specific IIB component (EC 2.7.1.69) compare
GFF607 -0.7 -0.7 hypothetical protein compare
GFF1806 -0.7 -1.9 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF133 -0.7 -1.4 Type IV fimbrial assembly protein PilC compare
GFF3913 -0.7 -1.6 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
GFF1334 -0.7 -0.6 Uncharacterized protein YohL compare
GFF754 -0.7 -2.1 YbjC protein, clustered with oxygen-insensitive NADPH nitroreductase compare
GFF4891 -0.7 -3.1 Transport ATP-binding protein CydD compare
GFF3053 -0.7 -3.2 Twitching motility protein PilT compare
GFF4335 -0.7 -1.8 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
GFF3743 -0.7 -1.6 FIG01046717: hypothetical protein compare
GFF4436 -0.7 -2.2 FIG074102: hypothetical protein compare
GFF2145 -0.7 -0.5 probable ribonuclease inhibitor YPO3690 compare
GFF1219 -0.7 -1.8 FIG01048676: hypothetical protein compare
GFF1576 -0.7 -1.1 hypothetical protein compare
GFF2248 -0.7 -1.1 FIG00642734: hypothetical protein compare
GFF4869 -0.7 -1.7 FIG00761799: membrane protein compare
GFF1599 -0.7 -1.0 Putative phosphatase YqaB compare
GFF1591 -0.7 -1.1 Transcription repressor of tripartite multidrug resistance system compare
GFF4728 -0.7 -1.5 Manganese ABC transporter, ATP-binding protein SitB compare
GFF3757 -0.7 -2.4 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
GFF3259 -0.7 -1.6 Protein ybcL precursor compare
GFF3506 -0.7 -0.7 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF1225 -0.7 -2.1 putative cytoplasmic protein compare
GFF4252 -0.7 -4.7 Type III restriction-modification system methylation subunit (EC 2.1.1.72) compare
GFF2063 -0.7 -0.6 Inner membrane protein YfeZ compare
GFF2572 -0.7 -1.9 Phenazine biosynthesis protein PhzF compare
GFF3794 -0.7 -2.4 SanA protein compare
GFF2347 -0.7 -3.3 Hydrogen peroxide-inducible genes activator compare
GFF2213 -0.7 -3.0 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF246 -0.6 -1.4 putative protein PaaI, possibly involved in aromatic compounds catabolism compare
GFF4406 -0.6 -1.1 Putative activity regulator of membrane protease YbbK compare
GFF4118 -0.6 -0.8 tRNA-Thr-CGT compare
GFF4411 -0.6 -3.1 Putative NAD(P)-dependent oxidoreductase EC-YbbO compare
GFF4337 -0.6 -0.8 FIG001943: hypothetical protein YajQ compare
GFF1109 -0.6 -1.0 Putative LysR family transcriptional regulator compare
GFF852 -0.6 -2.3 L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) (L-ascorbate utilization protein F) compare
GFF2949 -0.6 -2.1 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
GFF1654 -0.6 -2.1 Protein yecM compare
GFF3133 -0.6 -3.0 Putative cell division protein precursor compare
GFF3042 -0.6 -1.1 hypothetical protein STY3242 compare
GFF3617 -0.6 -1.4 LysR-family transcriptional regulator YdhB compare
GFF2878 -0.6 -3.9 Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-) compare
GFF728 -0.6 -2.9 Dipeptide transport system, periplasmic component in protein degradation cluster compare
GFF4234 -0.6 -0.8 Possible transmembrane regulator compare
GFF71 -0.6 -2.1 Minor fimbrial subunit StfF compare
GFF1946 -0.6 -1.0 FIG00639460: hypothetical protein compare
GFF1169 -0.6 -2.4 IncF plasmid conjugative transfer pilus assembly protein TraW compare
GFF365 -0.6 -1.5 Protein YicC compare
GFF890 -0.6 -1.3 Inosose dehydratase (EC 4.2.1.44) compare
GFF565 -0.6 -1.8 Putative ribokinase compare
GFF3146 -0.6 -1.1 '3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)' transl_table=11 compare
GFF3832 -0.6 -1.2 FIG01045739: hypothetical protein compare
GFF1587 -0.6 -3.6 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) compare
GFF1291 -0.6 -1.0 Phage minor tail protein #Phage minor tail protein T compare
GFF3196 -0.6 -0.6 Inner membrane protein YqjE compare
GFF748 -0.6 -1.7 Protein ybjI compare
GFF466 -0.6 -2.0 Chaperone protein lpfB precursor compare
GFF2196 -0.6 -1.8 Transaldolase (EC 2.2.1.2) compare
GFF4470 -0.6 -2.2 Putative ATPase involved in DNA repair compare
GFF4675 -0.6 -1.4 putative RecA/RadA recombinase compare
GFF1389 -0.6 -1.9 FIG074102: hypothetical protein compare
GFF2683 -0.6 -2.0 Phage shock protein D compare
GFF390 -0.6 -0.9 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF3873 -0.6 -1.1 Colanic acid biosynthesis glycosyl transferase WcaE compare
GFF3397 -0.6 -3.2 Transcription-repair coupling factor compare
GFF4789 -0.6 -2.4 Lipoprotein NlpD compare
GFF3665 -0.6 -1.9 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
GFF4460 -0.6 -1.0 Putative inner membrane protein compare
GFF1174 -0.6 -1.8 FIG00642834: hypothetical protein compare
GFF3642 -0.6 -1.1 Electron transport complex protein RnfE compare
GFF3888 -0.6 -1.2 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF82 -0.6 -0.7 hypothetical protein compare
GFF2430 -0.6 -0.7 Ferredoxin, 2Fe-2S compare
GFF159 -0.6 -0.8 hypothetical protein compare
GFF3758 -0.6 -1.8 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
GFF1666 -0.6 -1.6 Methyl-accepting chemotaxis protein compare
GFF2583 -0.6 -0.5 FIG00638150: hypothetical protein compare
GFF1817 -0.6 -1.3 Cytochrome c-type protein NapC compare


Specific Phenotypes

For 1 genes in this experiment

For phage S16_phage in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

For phage S16_phage across organisms