Experiment set3IT060 for Agrobacterium fabrum C58

Compare to:

L-Valine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.2 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1359 -5.0 -2.1 dnaK deletion suppressor protein compare
Atu2040 -4.6 -7.7 phosphoserine phosphatase compare
Atu3707 -4.5 -5.1 phosphoserine aminotransferase compare
Atu5146 -4.5 -3.1 hypothetical protein compare
Atu0679 -4.5 -9.1 ATP phosphoribosyltransferase compare
Atu0039 -4.5 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu3706 -4.2 -11.4 D-3-phosphoglycerate dehydrogenase compare
Atu0678 -3.9 -7.8 histidyl-tRNA synthetase compare
Atu0043 -3.8 -4.2 imidazoleglycerol-phosphate dehydratase compare
Atu1688 -3.7 -10.3 indole-3-glycerol-phosphate synthase compare
Atu0041 -3.6 -4.1 glutamine amidotransferase compare
Atu1687 -3.5 -12.4 anthranilate phosphoribosyltransferase compare
Atu2289 -3.5 -17.6 anthranilate synthase component I and II compare
Atu1750 -3.5 -9.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0035 -3.4 -9.3 phosphoenolpyruvate carboxykinase compare
Atu3469 -3.1 -4.5 phosphoglyceromutase compare
Atu0537 -3.0 -8.1 histidinol dehydrogenase compare
Atu0486 -3.0 -7.3 dihydroorotate dehydrogenase compare
Atu2709 -2.9 -14.2 3-isopropylmalate dehydratase, large subunit compare
Atu0871 -2.9 -7.6 branched-chain-amino-acid aminotransferase conserved
Atu2684 -2.9 -2.2 hypothetical protein compare
Atu2036 -2.9 -15.4 acetolactate synthase III, large subunit compare
Atu3740 -2.9 -11.5 fructose bisphosphate aldolase compare
Atu1205 -2.8 -13.6 threonine dehydratase compare
Atu1308 -2.7 -6.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2790 -2.6 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu5430 -2.6 -1.8 hypothetical protein compare
Atu0017 -2.6 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3739 -2.6 -3.5 phosphoglycerate kinase compare
Atu3712 -2.6 -2.1 hypothetical protein compare
Atu0298 -2.6 -9.4 orotidine 5 compare
Atu2791 -2.6 -7.8 3-isopropylmalate dehydrogenase compare
Atu0400 -2.5 -5.3 orotate phosphoribosyltransferase compare
Atu0399 -2.5 -8.8 dihydroorotase compare
Atu5501 -2.4 -2.4 hypothetical protein compare
Atu2650 -2.4 -11.5 glycerol-3-phosphate dehydrogenase compare
Atu2015 -2.4 -10.6 aminotransferase compare
Atu0876 -2.4 -1.9 superoxide dismutase compare
Atu3754 -2.3 -9.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4674 -2.2 -11.6 GntR family transcriptional regulator compare
Atu1620 -2.2 -11.3 triosephosphate isomerase compare
Atu1307 -2.2 -5.5 dihydroorotase compare
Atu1588 -2.2 -10.1 homoserine dehydrogenase compare
Atu5540 -2.2 -0.9 hypothetical protein compare
Atu1075 -2.1 -5.6 amidophosphoribosyltransferase compare
Atu4773 -2.1 -2.4 two component response regulator compare
Atu4166 -2.0 -3.9 UDP-glucose 4-epimerase compare
Atu3885 -2.0 -6.5 inositol monophosphatase compare
Atu1446 -2.0 -2.1 two component response regulator compare
Atu1141 -2.0 -7.4 Phosphoribosylglycinamide synthetase compare
Atu0647 -2.0 -6.1 phosphoribosylamine--glycine ligase compare
Atu4505 -1.9 -8.6 LacI family transcriptional regulator compare
Atu0332 -1.9 -11.6 RNA polymerase sigma-54 factor compare
Atu1850 -1.9 -3.8 phosphoribosylformylglycinamidine synthetase II compare
Atu1844 -1.9 -4.5 Phosphoribosylformylglycinamidine synthetase compare
Atu2264 -1.9 -8.7 2-isopropylmalate synthase compare
Atu0490 -1.9 -8.6 hypothetical protein compare
Atu0346 -1.8 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1140 -1.8 -6.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0038 -1.8 -4.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3009 -1.8 -1.8 exopolysaccharide production protein compare
Atu1445 -1.8 -5.7 two component sensor kinase compare
Atu2207 -1.7 -4.2 two component sensor kinase compare
Atu4711 -1.7 -7.2 two component sensor kinase compare
Atu1028 -1.7 -3.8 hypothetical protein compare
Atu0432 -1.6 -7.0 O-succinylhomoserine sulfhydrylase compare
Atu1845 -1.6 -3.4 phosphoribosylformylglycinamidine synthase I compare
Atu3755 -1.5 -3.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0361 -1.5 -2.8 transcriptional regulator compare
Atu3496 -1.5 -4.7 hypothetical protein compare
Atu2640 -1.5 -4.8 hypothetical protein compare
Atu8135 -1.5 -6.6 hypothetical protein compare
Atu2747 -1.5 -8.9 hypothetical protein compare
Atu0030 -1.4 -1.8 phosphocarrier protein HPr compare
Atu0225 -1.4 -1.3 hypothetical protein compare
Atu0837 -1.4 -4.7 transcriptional regulator, MarR family compare
Atu4896 -1.4 -1.7 acetyltransferase compare
Atu2209 -1.3 -3.2 pyrroline-5-carboxylate reductase compare
Atu0498 -1.3 -7.6 hypothetical protein compare
Atu4217 -1.2 -1.8 TetR family transcriptional regulator compare
Atu3293 -1.2 -5.2 D-amino acid dehydrogenase small subunit compare
Atu1457 -1.2 -3.3 hypothetical protein compare
Atu2115 -1.2 -6.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0723 -1.2 -2.1 FAD dependent oxidoreductase compare
Atu3730 -1.1 -1.3 hypothetical protein compare
Atu2376 -1.1 -1.3 hypothetical protein compare
Atu1219 -1.1 -1.3 hypothetical protein compare
Atu4894 -1.1 -5.0 transposase compare
Atu2163 -1.1 -1.8 hypothetical protein compare
Atu6106 -1.1 -1.7 conserved hypothetical protein compare
Atu0525 -1.1 -4.1 transcriptional regulator, LuxR family compare
Atu0566 -1.1 -1.9 hypothetical protein compare
Atu0941 -1.0 -1.1 hypothetical protein compare
Atu4317 -1.0 -3.7 TetR family transcriptional regulator compare
Atu3290 -1.0 -7.9 phosphomethylpyrimidine kinase compare
Atu4882 -1.0 -2.4 hypothetical protein compare
Atu8161 -1.0 -1.4 hypothetical protein compare
Atu2569 -1.0 -6.7 thiamine biosynthesis protein compare
Atu0040 -1.0 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu5088 -1.0 -1.6 hypothetical protein compare
Atu0189 -1.0 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0031 -1.0 -1.4 PTS system, IIA component compare
Atu0354 -1.0 -2.0 ferric uptake regulator compare
Atu1573 -1.0 -1.5 hypothetical protein compare
Atu2183 -0.9 -5.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2155 -0.9 -7.5 methionine synthase compare
Atu1456 -0.9 -5.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0190 -0.9 -5.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu6133 -0.9 -2.1 conserved hypothetical protein compare
Atu1810 -0.9 -1.4 hypothetical protein compare
Atu3353 -0.9 -5.7 mannose-1-phosphate guanylyltransferase compare
Atu8162 -0.9 -1.3 hypothetical protein compare
Atu3006 -0.9 -2.5 hypothetical protein compare
Atu1466 -0.9 -1.6 hypothetical protein compare
Atu5106 -0.9 -1.2 DNA binding protein compare
Atu4614 -0.8 -4.6 glycosyltransferase compare
Atu1455 -0.8 -2.7 hypothetical protein compare
Atu0977 -0.8 -2.4 serine protease DO-like protease compare
Atu3014 -0.8 -1.6 hypothetical protein compare
Atu4502 -0.8 -4.0 cobalamin synthesis protein compare
Atu5145 -0.8 -1.7 acetyltransferase compare
Atu1774 -0.8 -4.2 ABC transporter, substrate binding protein (peptide) compare
Atu4888 -0.8 -3.2 hypothetical protein compare
Atu2718 -0.8 -3.9 homoserine O-succinyltransferase compare
Atu0280 -0.8 -2.0 hypothetical protein compare
Atu8034 -0.8 -2.0 hypothetical protein compare
Atu4869 -0.8 -2.6 hypothetical protein compare
Atu0524 -0.8 -3.5 transcriptional regulator, LuxR family compare
Atu1163 -0.8 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0322 -0.8 -4.2 enoyl CoA hydratase compare
Atu5164 -0.8 -0.5 type IV secretion protein AvhB3 compare
Atu3008 -0.8 -0.8 hypothetical protein compare
Atu5152 -0.8 -2.0 hypothetical protein compare
Atu0188 -0.8 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu1364 -0.8 -3.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2123 -0.8 -3.2 methylenetetrahydrofolate reductase compare
Atu4873 -0.7 -3.5 TetR family transcriptional regulator compare
Atu2432 -0.7 -1.3 hypothetical protein compare
Atu0690 -0.7 -1.4 hypothetical protein compare
Atu3011 -0.7 -2.0 ArsR family transcriptional regulator compare
Atu4889 -0.7 -3.5 hypothetical protein compare
Atu5115 -0.7 -0.8 hypothetical protein compare
Atu1589 -0.7 -3.4 aminotransferase, class I compare
Atu2777 -0.7 -3.7 hypothetical protein compare
Atu4881 -0.7 -3.0 hypothetical protein compare
Atu8130 -0.7 -4.4 hypothetical protein compare
Atu0544 -0.7 -1.9 hypothetical protein compare
Atu5538 -0.7 -1.9 hypothetical protein compare
Atu1372 -0.7 -2.9 hypothetical protein compare
Atu8046 -0.7 -1.2 hypothetical protein compare
Atu3015 -0.7 -3.2 hypothetical protein compare
Atu5429 -0.7 -1.8 transcriptional regulator compare
Atu3012 -0.7 -1.5 hypothetical protein compare
Atu1686 -0.7 -5.1 peptidyl-prolyl cis-trans isomerse D compare
Atu4615 -0.7 -3.5 glucose-1-phosphate thymidylyltransferase compare
Atu6160 -0.7 -2.0 conserved hypothetical protein compare
Atu0895 -0.7 -2.1 ABC transporter, substrate binding protein compare
Atu0357 -0.7 -3.6 phosphate starvation inducible protein compare
Atu3311 -0.7 -5.5 phosphomannose isomerase compare
Atu0784 -0.7 -2.2 hypothetical protein compare
Atu3016 -0.7 -3.3 phosphoglyceromutase compare
Atu3075 -0.7 -3.8 TetR family transcriptional regulator compare
Atu4617 -0.7 -4.3 dTDP-D-glucose-4,6-dehydratase compare
Atu5415 -0.7 -2.0 hypothetical protein compare
Atu0785 -0.7 -2.4 ribosomal-protein (S5)-alanine N-acetyltransferase compare
Atu1689 -0.7 -1.0 molybdenum cofactor biosynthesis protein C compare
Atu2800 -0.7 -1.7 precorrin-3B C17-methyltransferase compare
Atu4613 -0.7 -4.7 glycosyltransferase compare
Atu4867 -0.7 -4.6 hypothetical protein compare
Atu4618 -0.7 -4.2 dTDP-rhamnose-3,5-epimerase compare
Atu1026 -0.6 -1.6 hypothetical protein compare
Atu8203 -0.6 -1.1 hypothetical protein compare
Atu3029 -0.6 -4.1 glucarate dehydratase compare
Atu3867 -0.6 -3.8 hypothetical protein compare
Atu2344 -0.6 -1.9 lactoylglutathione lyase compare
Atu8052 -0.6 -0.6 hypothetical protein compare
Atu0972 -0.6 -2.3 lipA protein compare
Atu1705 -0.6 -2.2 SEC-independent protein translocase protein compare
Atu3289 -0.6 -1.6 thiamine-phosphate pyrophosphorylase compare
Atu0908 -0.6 -2.5 transcriptional regulator compare
Atu4870 -0.6 -3.8 NADP-dependent quinone oxidoreductase compare
Atu3028 -0.6 -4.0 hypothetical protein compare
Atu4876 -0.6 -4.2 oxidoreductase compare
Atu1748 -0.6 -3.9 NIFU-like protein compare
Atu3999 -0.6 -1.8 dithiobiotin synthetase compare
Atu0106 -0.6 -1.4 cold shock protein compare
Atu4866 -0.6 -4.4 hypothetical protein compare
Atu4306 -0.6 -2.6 two component response regulator compare
Atu2555 -0.6 -2.3 L-lysine 2,3-aminomutase compare
Atu0331 -0.6 -1.8 sigma-54 modulation protein compare
Atu3024 -0.6 -4.4 sugar ABC transporter permease compare
Atu6159 -0.6 -0.9 hypothetical protein compare
Atu2116 -0.6 -1.9 hypothetical protein compare
Atu0680 -0.6 -2.2 hypothetical protein compare
Atu2267 -0.6 -3.3 hypothetical protein compare
Atu2083 -0.6 -1.4 DNA repair protein RecN compare
Atu3866 -0.6 -4.6 hypothetical protein compare
Atu4864 -0.6 -2.4 MarR family transcriptional regulator compare
Atu4616 -0.5 -1.0 dTDP-4-dehydrorhamnose reductase compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Valine in Agrobacterium fabrum C58

For nitrogen source L-Valine across organisms