Experiment set3IT059 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Cephalothin sodium salt 3 mg/ml

200 most important genes:

  gene name fitness t score description  
PfGW456L13_2623 -4.2 -2.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
PfGW456L13_1735 -3.3 -4.4 Glycerol uptake facilitator protein compare
PfGW456L13_430 -3.1 -9.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
PfGW456L13_854 -2.9 -4.3 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_1603 -2.9 -1.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
PfGW456L13_773 -2.9 -9.3 Hydrogen peroxide-inducible genes activator compare
PfGW456L13_275 -2.8 -2.6 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_5060 -2.7 -5.4 Peptide chain release factor 3 compare
PfGW456L13_1363 -2.7 -6.9 Rare lipoprotein A precursor compare
PfGW456L13_5150 -2.6 -3.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_4859 -2.5 -5.1 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_845 -2.5 -9.5 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_4668 -2.3 -6.3 RecA protein compare
PfGW456L13_4026 -2.3 -3.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
PfGW456L13_4582 -2.3 -7.2 RND efflux system, outer membrane lipoprotein CmeC compare
PfGW456L13_1192 -2.3 -4.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
PfGW456L13_2632 -2.3 -3.5 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
PfGW456L13_2271 -2.2 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_2631 -2.2 -3.2 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
PfGW456L13_5006 -2.2 -2.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_793 -2.1 -3.8 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_1236 -2.1 -10.2 Cell wall endopeptidase, family M23/M37 compare
PfGW456L13_772 -2.0 -8.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
PfGW456L13_5005 -1.9 -5.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
PfGW456L13_4165 -1.9 -4.5 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_1233 -1.8 -4.2 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_644 -1.7 -7.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
PfGW456L13_1479 -1.7 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
PfGW456L13_1574 -1.7 -4.0 GTP-binding and nucleic acid-binding protein YchF compare
PfGW456L13_1749 -1.7 -4.4 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_2107 -1.6 -4.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
PfGW456L13_50 -1.6 -7.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
PfGW456L13_4207 -1.6 -6.1 Periplasmic protease compare
PfGW456L13_2084 -1.5 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PfGW456L13_2025 -1.5 -5.7 Cytochrome c-type biogenesis protein ResA compare
PfGW456L13_656 -1.5 -3.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_4581 -1.5 -10.2 RND efflux system, inner membrane transporter CmeB compare
PfGW456L13_5112 -1.5 -2.3 tmRNA-binding protein SmpB compare
PfGW456L13_1528 -1.5 -2.0 C4-type zinc finger protein, DksA/TraR family compare
PfGW456L13_3000 -1.4 -1.9 FIG00961385: hypothetical protein compare
PfGW456L13_605 -1.4 -2.4 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
PfGW456L13_276 -1.4 -1.4 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_1021 -1.4 -4.1 Glutathione synthetase (EC 6.3.2.3) compare
PfGW456L13_2297 -1.4 -4.2 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
PfGW456L13_427 -1.4 -1.8 Two-component system response regulator OmpR compare
PfGW456L13_2385 -1.3 -2.4 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
PfGW456L13_3997 -1.3 -3.1 hypothetical protein compare
PfGW456L13_3905 -1.3 -1.9 hypothetical protein compare
PfGW456L13_4580 -1.3 -5.7 Multidrug efflux RND membrane fusion protein MexC compare
PfGW456L13_1838 -1.3 -4.3 Sensory box histidine kinase compare
PfGW456L13_4012 -1.3 -2.1 VacJ-like lipoprotein precursor compare
PfGW456L13_913 -1.3 -6.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_1655 -1.2 -1.9 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
PfGW456L13_2176 -1.2 -5.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_1845 -1.2 -2.8 Cold shock protein CspC compare
PfGW456L13_875 -1.2 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_3179 -1.2 -3.0 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_1108 -1.2 -2.6 hypothetical protein compare
PfGW456L13_2496 -1.2 -1.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
PfGW456L13_1984 -1.1 -2.1 Mg/Co/Ni transporter MgtE / CBS domain compare
PfGW456L13_3824 -1.1 -2.5 Muconate cycloisomerase (EC 5.5.1.1) compare
PfGW456L13_4842 -1.1 -2.2 Translation elongation factor LepA compare
PfGW456L13_2551 -1.1 -2.2 Cell division trigger factor (EC 5.2.1.8) compare
PfGW456L13_795 -1.1 -1.4 hypothetical protein compare
PfGW456L13_2314 -1.1 -2.2 ABC-type proline/glycine betaine transport systems, ATPase components compare
PfGW456L13_4155 -1.0 -3.7 Spermidine synthase (EC 2.5.1.16) compare
PfGW456L13_2436 -1.0 -3.3 Phenylacetic acid degradation operon negative regulatory protein PaaX compare
PfGW456L13_1523 -1.0 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
PfGW456L13_751 -1.0 -3.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
PfGW456L13_3598 -1.0 -1.1 hypothetical protein compare
PfGW456L13_4231 -1.0 -1.3 hypothetical protein compare
PfGW456L13_1865 -1.0 -1.6 Cold shock protein CspA compare
PfGW456L13_1020 -1.0 -4.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
PfGW456L13_4607 -1.0 -1.9 hypothetical protein compare
PfGW456L13_3704 -1.0 -2.8 Transcriptional regulator RpiR in protein degradation cluster compare
PfGW456L13_5008 -1.0 -1.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_858 -1.0 -3.5 Uroporphyrinogen-III synthase (EC 4.2.1.75) compare
PfGW456L13_1773 -1.0 -3.5 putative exported protein compare
PfGW456L13_1853 -1.0 -2.2 Holliday junction DNA helicase RuvB compare
PfGW456L13_3017 -1.0 -1.0 Cold-shock DNA-binding domain compare
PfGW456L13_4934 -1.0 -4.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
PfGW456L13_3667 -0.9 -1.3 hypothetical protein compare
PfGW456L13_1160 -0.9 -3.8 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
PfGW456L13_4836 -0.9 -4.7 Transglycosylase, Slt family compare
PfGW456L13_2556 -0.9 -2.1 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
PfGW456L13_4254 -0.9 -4.0 FIG00955360: hypothetical protein compare
PfGW456L13_4662 -0.9 -1.5 Transcriptional regulator, LuxR family compare
PfGW456L13_1972 -0.9 -1.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
PfGW456L13_4769 -0.9 -1.4 hypothetical protein compare
PfGW456L13_111 -0.9 -2.4 Urease accessory protein UreE compare
PfGW456L13_4033 -0.9 -1.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
PfGW456L13_1198 -0.9 -2.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
PfGW456L13_1368 -0.9 -2.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_4038 -0.9 -1.5 DNA topoisomerase I (EC 5.99.1.2) compare
PfGW456L13_3348 -0.9 -1.1 Transcriptional regulator compare
PfGW456L13_2931 -0.8 -1.0 transcriptional regulator MvaT, P16 subunit, putative compare
PfGW456L13_591 -0.8 -2.6 Cytochrome c4 compare
PfGW456L13_2996 -0.8 -3.0 Nuclease inhibitor compare
PfGW456L13_4238 -0.8 -2.8 Cobyric acid synthase (EC 6.3.5.10) compare
PfGW456L13_4935 -0.8 -4.7 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
PfGW456L13_3327 -0.8 -2.7 FIG00954117: hypothetical protein compare
PfGW456L13_1300 -0.8 -2.9 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
PfGW456L13_5048 -0.8 -2.2 Dna binding response regulator PrrA (RegA) compare
PfGW456L13_3047 -0.8 -1.9 Response regulator compare
PfGW456L13_1852 -0.8 -3.6 Holliday junction DNA helicase RuvA compare
PfGW456L13_2956 -0.8 -3.3 Transcriptional regulatory protein RstA compare
PfGW456L13_1975 -0.8 -1.6 Succinylarginine dihydrolase (EC 3.5.3.23) compare
PfGW456L13_621 -0.8 -2.4 hypothetical protein compare
PfGW456L13_1690 -0.8 -2.0 Molybdenum cofactor biosynthesis protein MoaD compare
PfGW456L13_4641 -0.8 -1.4 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
PfGW456L13_4305 -0.8 -2.9 Transcriptional regulator, LysR family compare
PfGW456L13_4863 -0.8 -2.0 FIG021952: putative membrane protein compare
PfGW456L13_4936 -0.8 -4.4 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
PfGW456L13_3825 -0.8 -2.4 Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family) compare
PfGW456L13_787 -0.8 -4.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
PfGW456L13_1973 -0.8 -2.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
PfGW456L13_3419 -0.8 -1.5 hypothetical protein compare
PfGW456L13_4932 -0.8 -4.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
PfGW456L13_1580 -0.8 -4.2 FIG140336: TPR domain protein compare
PfGW456L13_3291 -0.8 -1.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
PfGW456L13_582 -0.8 -1.5 probable exported protein YPO0432 compare
PfGW456L13_895 -0.8 -2.1 FIG001590: Putative conserved exported protein precursor compare
PfGW456L13_559 -0.8 -5.5 Acetyl-CoA hydrolase (EC 3.1.2.1) compare
PfGW456L13_4507 -0.7 -1.5 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
PfGW456L13_1538 -0.7 -5.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
PfGW456L13_2813 -0.7 -2.9 Adenylylsulfate reductase beta-subunit (EC 1.8.99.2) compare
PfGW456L13_2608 -0.7 -1.2 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
PfGW456L13_4447 -0.7 -3.1 hypothetical protein compare
PfGW456L13_3356 -0.7 -0.9 hypothetical protein compare
PfGW456L13_1842 -0.7 -4.4 Outer membrane porin, OprD family compare
PfGW456L13_2649 -0.7 -2.0 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
PfGW456L13_327 -0.7 -3.1 hypothetical protein compare
PfGW456L13_2699 -0.7 -2.3 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_3699 -0.7 -3.0 Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein compare
PfGW456L13_302 -0.7 -2.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
PfGW456L13_2277 -0.7 -1.6 DNA-binding response regulator, LuxR family compare
PfGW456L13_1636 -0.7 -3.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
PfGW456L13_4412 -0.7 -2.0 Nitroreductase family protein compare
PfGW456L13_3674 -0.7 -2.5 Putative subunit of Alternative cytochrome c oxidase compare
PfGW456L13_2015 -0.7 -1.6 hypothetical protein compare
PfGW456L13_2299 -0.7 -1.7 Two-component system response regulator QseB compare
PfGW456L13_202 -0.7 -2.7 Probable transcription regulator Mig-14 compare
PfGW456L13_2581 -0.6 -2.1 Transmembrane regulator protein PrtR compare
PfGW456L13_4511 -0.6 -1.3 Rhodanese-like domain protein compare
PfGW456L13_4618 -0.6 -1.4 Outer membrane lipoprotein compare
PfGW456L13_5096 -0.6 -1.4 FIG004454: RNA binding protein compare
PfGW456L13_4009 -0.6 -4.1 Transaldolase (EC 2.2.1.2) compare
PfGW456L13_4308 -0.6 -3.0 Cytochrome c heme lyase subunit CcmH compare
PfGW456L13_1628 -0.6 -2.7 ATPase, AFG1 family compare
PfGW456L13_595 -0.6 -1.3 FIG00953549: hypothetical protein compare
PfGW456L13_1498 -0.6 -0.9 FIG060329: MOSC domain protein compare
PfGW456L13_2957 -0.6 -1.6 Sensory histidine kinase QseC compare
PfGW456L13_4851 -0.6 -2.2 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
PfGW456L13_151 -0.6 -1.6 HflC protein compare
PfGW456L13_3843 -0.6 -2.0 Predicted secretion system X translation initiation factor compare
PfGW456L13_2994 -0.6 -2.5 Oxidoreductase compare
PfGW456L13_1382 -0.6 -3.5 FOG: TPR repeat, SEL1 subfamily compare
PfGW456L13_4337 -0.6 -0.8 Flagellar biosynthesis protein FliR compare
PfGW456L13_4883 -0.6 -2.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
PfGW456L13_5017 -0.6 -2.3 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
PfGW456L13_2097 -0.6 -2.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
PfGW456L13_4551 -0.6 -2.4 Transcriptional regulator, MerR family compare
PfGW456L13_140 -0.6 -2.3 FIG003573: hypothetical protein compare
PfGW456L13_4451 -0.6 -2.8 ATP-dependent RNA helicase SrmB compare
PfGW456L13_3124 -0.6 -1.5 hypothetical protein compare
PfGW456L13_1050 -0.6 -3.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
PfGW456L13_3936 -0.6 -2.3 Colicin V production protein compare
PfGW456L13_2682 -0.6 -1.9 Gll0911 protein compare
PfGW456L13_757 -0.6 -1.7 Phosphate transport system regulatory protein PhoU compare
PfGW456L13_811 -0.6 -1.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
PfGW456L13_2526 -0.6 -1.9 4-hydroxyphenylacetate 3-monooxygenase, reductase component (EC 1.6.8.-) compare
PfGW456L13_3991 -0.6 -4.1 Capsular polysaccharide biosynthesis protein compare
PfGW456L13_2821 -0.6 -1.7 DNA polymerase-like protein PA0670 compare
PfGW456L13_653 -0.6 -3.0 Trk system potassium uptake protein TrkA compare
PfGW456L13_3494 -0.6 -3.0 hypothetical protein compare
PfGW456L13_5039 -0.6 -1.7 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
PfGW456L13_1612 -0.6 -1.8 FIG00956396: hypothetical protein compare
PfGW456L13_1545 -0.6 -2.8 Paraquat-inducible protein A compare
PfGW456L13_3304 -0.6 -2.6 TPR domain protein in aerotolerance operon compare
PfGW456L13_1983 -0.6 -1.0 hypothetical protein compare
PfGW456L13_630 -0.6 -1.4 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
PfGW456L13_367 -0.5 -2.0 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
PfGW456L13_4424 -0.5 -1.8 FIG00953416: hypothetical protein compare
PfGW456L13_3349 -0.5 -1.6 probable dioxygenase compare
PfGW456L13_2163 -0.5 -2.4 Rhodanese domain protein UPF0176 compare
PfGW456L13_2186 -0.5 -1.9 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
PfGW456L13_1004 -0.5 -2.0 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
PfGW456L13_1312 -0.5 -1.9 Ribonucleotide reductase transcriptional regulator NrdR compare
PfGW456L13_240 -0.5 -2.2 FIG143263: Glycosyl transferase compare
PfGW456L13_4933 -0.5 -1.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
PfGW456L13_2189 -0.5 -2.7 UDP-2,3-diacetamido-2,3-dideoxy-D-mannuronic acid transferase compare
PfGW456L13_3205 -0.5 -2.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
PfGW456L13_4433 -0.5 -0.9 FIG00955751: hypothetical protein compare
PfGW456L13_4253 -0.5 -1.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
PfGW456L13_1667 -0.5 -3.1 Outer membrane component of tripartite multidrug resistance system compare
PfGW456L13_4898 -0.5 -0.9 Inner membrane protein compare
PfGW456L13_2429 -0.5 -1.6 hypothetical protein compare
PfGW456L13_139 -0.5 -0.8 LSU ribosomal protein L9p compare
PfGW456L13_477 -0.5 -0.7 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
PfGW456L13_1288 -0.5 -1.4 Isochorismatase (EC 3.3.2.1) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens GW456-L13 in stress experiments

For stress Cephalothin sodium salt across organisms