Experiment set3IT059 for Agrobacterium fabrum C58

Compare to:

L-Histidine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1308 -6.9 -6.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0035 -6.7 -10.3 phosphoenolpyruvate carboxykinase compare
Atu3740 -6.7 -8.0 fructose bisphosphate aldolase compare
Atu1687 -6.6 -11.1 anthranilate phosphoribosyltransferase compare
Atu0099 -6.4 -12.3 prephenate dehydratase compare
Atu3707 -6.3 -4.3 phosphoserine aminotransferase compare
Atu2264 -6.0 -14.6 2-isopropylmalate synthase compare
Atu2289 -5.9 -19.5 anthranilate synthase component I and II compare
Atu3706 -5.7 -9.5 D-3-phosphoglycerate dehydrogenase compare
Atu2709 -5.7 -20.4 3-isopropylmalate dehydratase, large subunit compare
Atu1620 -5.6 -14.6 triosephosphate isomerase compare
Atu4505 -5.4 -12.5 LacI family transcriptional regulator compare
Atu2650 -5.3 -12.4 glycerol-3-phosphate dehydrogenase compare
Atu2790 -5.3 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu2791 -5.2 -9.2 3-isopropylmalate dehydrogenase compare
Atu0647 -5.0 -5.9 phosphoribosylamine--glycine ligase compare
Atu1845 -5.0 -6.2 phosphoribosylformylglycinamidine synthase I compare
Atu2040 -4.9 -7.5 phosphoserine phosphatase compare
Atu2036 -4.9 -17.5 acetolactate synthase III, large subunit compare
Atu1688 -4.8 -7.0 indole-3-glycerol-phosphate synthase compare
Atu0017 -4.7 -4.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1588 -4.6 -12.3 homoserine dehydrogenase compare
Atu3935 -4.6 -19.3 N-formimino-L-glutamate deiminase conserved
Atu1141 -4.5 -7.0 Phosphoribosylglycinamide synthetase compare
Atu0298 -4.4 -8.4 orotidine 5 compare
Atu0399 -4.4 -8.9 dihydroorotase compare
Atu2747 -4.4 -12.1 hypothetical protein compare
Atu3754 -4.4 -9.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1205 -4.3 -12.8 threonine dehydratase compare
Atu0432 -4.3 -8.2 O-succinylhomoserine sulfhydrylase compare
Atu1075 -4.1 -9.1 amidophosphoribosyltransferase compare
Atu2718 -4.1 -10.9 homoserine O-succinyltransferase compare
Atu0486 -4.1 -7.1 dihydroorotate dehydrogenase compare
Atu3755 -4.1 -6.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3469 -4.0 -3.9 phosphoglyceromutase compare
Atu0723 -4.0 -2.7 FAD dependent oxidoreductase compare
Atu2015 -4.0 -13.2 aminotransferase compare
Atu1307 -3.7 -5.1 dihydroorotase compare
Atu2115 -3.7 -12.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1686 -3.5 -17.8 peptidyl-prolyl cis-trans isomerse D compare
Atu0400 -3.5 -7.3 orotate phosphoribosyltransferase compare
Atu1850 -3.5 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu3739 -3.4 -2.0 phosphoglycerate kinase compare
Atu2155 -3.4 -19.0 methionine synthase compare
Atu1844 -3.4 -4.1 Phosphoribosylformylglycinamidine synthetase compare
Atu1359 -3.3 -1.9 dnaK deletion suppressor protein compare
Atu1685 -3.3 -1.9 hypothetical protein compare
Atu1455 -3.3 -7.4 hypothetical protein compare
Atu3933 -2.9 -17.8 histidine ammonia-lyase conserved
Atu1456 -2.9 -10.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3934 -2.9 -11.8 imidazolonepropionase conserved
Atu1589 -2.9 -7.1 aminotransferase, class I compare
Atu1140 -2.8 -6.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3731 -2.8 -12.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu3794 -2.8 -9.5 FadR family transcriptional regulator compare
Atu6098 -2.7 -1.1 transcriptional regulator, HTH family compare
Atu1030 -2.7 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3482 -2.6 -10.2 pantoate--beta-alanine ligase compare
Atu2548 -2.6 -12.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1454 -2.5 -10.9 siroheme synthase compare
Atu2800 -2.5 -2.7 precorrin-3B C17-methyltransferase compare
Atu3483 -2.4 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2020 -2.4 -8.5 transcriptional regulator, TetR family compare
Atu0093 -2.2 -4.1 Recombination protein compare
Atu0030 -2.1 -2.1 phosphocarrier protein HPr compare
Atu1874 -2.1 -4.5 RecA protein compare
Atu3932 -2.0 -11.5 hypothetical protein conserved
Atu3783 -1.9 -12.2 glutamate synthase subunit beta compare
Atu3931 -1.9 -10.7 urocanate hydratase conserved
Atu2057 -1.9 -3.6 DNA helicase II compare
Atu1572 -1.9 -7.4 hydrolase compare
Atu4096 -1.9 -8.5 nicotinate-nucleotide pyrophosphorylase compare
Atu0291 -1.9 -10.1 hypothetical protein compare
Atu2123 -1.9 -7.6 methylenetetrahydrofolate reductase compare
Atu2205 -1.8 -5.9 transcriptional regulator, MarR family compare
Atu0422 -1.8 -3.1 ABC transporter, membrane spanning protein compare
Atu6165 -1.7 -0.9 hypothetical protein compare
Atu3784 -1.7 -13.7 glutamate synthase large subunit compare
Atu2796 -1.7 -9.9 precorrin-4 C11-methyltransferase compare
Atu0354 -1.6 -2.8 ferric uptake regulator compare
Atu0346 -1.6 -3.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1039 -1.6 -4.9 DNA repair protein RecO compare
Atu0184 -1.6 -3.7 glucokinase compare
Atu2807 -1.6 -5.9 cob(I)alamin adenosyltransferase compare
Atu3289 -1.5 -3.7 thiamine-phosphate pyrophosphorylase compare
Atu0641 -1.5 -3.8 hypothetical protein compare
Atu1446 -1.5 -3.3 two component response regulator compare
Atu3298 -1.5 -9.4 C4-dicarboxylate transporter DctA compare
Atu1748 -1.5 -6.4 NIFU-like protein compare
Atu4098 -1.5 -8.3 quinolinate synthetase compare
Atu1372 -1.5 -6.6 hypothetical protein compare
Atu2799 -1.5 -5.5 precorrin-6x reductase compare
Atu3290 -1.4 -9.3 phosphomethylpyrimidine kinase compare
Atu4097 -1.4 -7.9 L-aspartate oxidase compare
Atu0941 -1.4 -1.2 hypothetical protein compare
Atu2569 -1.4 -8.9 thiamine biosynthesis protein compare
Atu2640 -1.4 -4.8 hypothetical protein compare
Atu3296 -1.4 -7.5 two component response regulator for C4-dicarboxylate transport compare
Atu1457 -1.4 -3.5 hypothetical protein compare
Atu0332 -1.4 -6.7 RNA polymerase sigma-54 factor compare
Atu3750 -1.4 -3.1 thiamine-phosphate pyrophosphorylase compare
Atu0029 -1.3 -4.0 S-adenosylhomocysteine hydrolase compare
Atu3598 -1.3 -1.4 thiol:disulfide interchange protein compare
Atu2376 -1.3 -1.2 hypothetical protein compare
Atu2809 -1.3 -6.5 cobalamin biosynthesis protein compare
Atu3288 -1.3 -6.5 hydroxyethylthiazole kinase compare
Atu1354 -1.2 -1.4 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3297 -1.2 -7.4 two component sensor kinase for C4-dicarboxylate transport compare
Atu2798 -1.2 -4.1 precorrin-6y methyltransferase compare
Atu0361 -1.2 -2.3 transcriptional regulator compare
Atu5430 -1.2 -1.4 hypothetical protein compare
Atu2804 -1.2 -7.2 cobaltochelatase subunit compare
Atu2808 -1.1 -6.1 cobyric acid synthase compare
Atu0141 -1.1 -1.4 cytochrome O ubiquinol oxidase subunit I compare
Atu2766 -1.1 -9.2 NAD-glutamate dehydrogenase compare
Atu3730 -1.1 -1.6 hypothetical protein compare
Atu0986 -1.1 -1.4 hypothetical protein compare
Atu2803 -1.1 -2.5 Cobalamin biosynthesis associated protein compare
Atu2795 -1.1 -4.2 cobalamin biosynthetic protein compare
Atu1891 -1.0 -3.5 cobalamin biosynthesis protein compare
Atu1542 -1.0 -4.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2555 -0.9 -2.5 L-lysine 2,3-aminomutase compare
Atu1463 -0.9 -3.4 glycine cleavage system component H compare
Atu1103 -0.9 -2.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0073 -0.9 -3.9 recF-like protein compare
Atu0566 -0.9 -1.7 hypothetical protein compare
Atu1810 -0.9 -1.4 hypothetical protein compare
Atu0421 -0.9 -1.2 ABC transporter, membrane spanning protein compare
Atu1077 -0.9 -2.5 DNA repair protein compare
Atu2793 -0.8 -3.1 cobyrinic acid a,c-diamide synthase compare
Atu1462 -0.8 -5.9 glycine cleavage system protein P2 compare
Atu0769 -0.8 -1.5 protoheme IX farnesyltransferase compare
Atu2746 -0.8 -2.6 hypothetical protein compare
Atu2069 -0.8 -3.7 hypothetical protein compare
Atu4711 -0.8 -4.2 two component sensor kinase compare
Atu2249 -0.8 -1.1 hypothetical protein compare
Atu3791 -0.8 -4.3 L-asparaginase compare
Atu0876 -0.8 -0.8 superoxide dismutase compare
Atu8087 -0.8 -0.8 putative peptidoglycan binding protein compare
Atu1149 -0.8 -1.4 adenylate cyclase compare
Atu2801 -0.8 -3.0 precorrin-2 C20 methyltransferase compare
Atu4346 -0.8 -3.0 hypothetical protein compare
Atu6114 -0.8 -1.4 hypothetical protein compare
Atu2073 -0.8 -3.7 membrane protein compare
Atu4217 -0.8 -1.6 TetR family transcriptional regulator compare
Atu2783 -0.8 -3.8 acetyltransferase compare
Atu1464 -0.7 -3.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu5107 -0.7 -2.0 hypothetical protein compare
Atu0654 -0.7 -3.1 transcriptional regulator, LysR family compare
Atu2810 -0.7 -4.7 cobalamin biosynthetic protein compare
Atu2083 -0.7 -2.4 DNA repair protein RecN compare
Atu5010 -0.7 -1.3 hypothetical protein compare
Atu2802 -0.7 -3.6 precorrin-8X methylmutase compare
Atu3317 -0.7 -2.2 hypothetical protein compare
Atu0228 -0.7 -3.1 hypothetical protein compare
Atu4498 -0.7 -3.2 hypothetical protein compare
Atu0031 -0.7 -1.0 PTS system, IIA component compare
Atu2772 -0.7 -3.5 Invasion protein A compare
Atu2554 -0.7 -1.7 lysyl-tRNA synthetase compare
Atu0631 -0.7 -3.2 molybdenum cofactor biosynthesis protein B compare
Atu4499 -0.7 -2.8 hypothetical protein compare
Atu2710 -0.7 -3.5 hypothetical protein compare
Atu1468 -0.6 -3.6 hypothetical protein compare
Atu2805 -0.6 -2.7 cobalamin synthesis protein compare
Atu8056 -0.6 -0.8 hypothetical protein compare
Atu4176 -0.6 -3.4 hypothetical protein compare
Atu3998 -0.6 -4.9 8-amino-7-oxononanoate synthase compare
Atu0188 -0.6 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu0544 -0.6 -1.5 hypothetical protein compare
Atu1774 -0.6 -3.9 ABC transporter, substrate binding protein (peptide) compare
Atu1782 -0.6 -1.8 hypothetical protein compare
Atu3997 -0.6 -4.8 biotin synthetase compare
Atu2511 -0.6 -2.2 D-alanine aminotransferase compare
Atu8034 -0.6 -2.4 hypothetical protein compare
Atu0846 -0.6 -2.0 transcriptional regulator, MarR family compare
Atu4873 -0.6 -3.1 TetR family transcriptional regulator compare
Atu0690 -0.6 -1.7 hypothetical protein compare
Atu2633 -0.6 -1.3 RhtB family transporter compare
Atu0225 -0.6 -0.6 hypothetical protein compare
Atu3287 -0.6 -2.1 thiamine biosynthesis associated protein compare
Atu4000 -0.6 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu4773 -0.6 -0.6 two component response regulator compare
Atu0328 -0.6 -3.2 heat-inducible transcription repressor compare
Atu0812 -0.5 -1.6 hypothetical protein compare
Atu2797 -0.5 -2.0 cobalamin biosynthesis protein compare
Atu8200 -0.5 -2.0 hypothetical protein compare
Atu4001 -0.5 -2.4 3-oxoacyl-ACP synthase compare
Atu4179 -0.5 -2.2 hypothetical protein compare
Atu3999 -0.5 -1.5 dithiobiotin synthetase compare
Atu0050 -0.5 -2.2 two component response regulator compare
Atu2127 -0.5 -3.4 L-carnitine dehydratase compare
Atu1518 -0.5 -2.5 transcriptional regulator, Fur family compare
Atu2432 -0.5 -1.4 hypothetical protein compare
Atu1023 -0.5 -1.2 hypothetical protein compare
Atu3075 -0.5 -2.6 TetR family transcriptional regulator compare
Atu1241 -0.5 -1.2 hypothetical protein compare
Atu1369 -0.5 -1.8 HIT family protein compare
Atu3115 -0.5 -2.0 TetR family transcriptional regulator compare
Atu0501 -0.5 -3.9 acyl-CoA dehydrogenase compare
Atu3429 -0.5 -0.9 hypothetical protein compare


Specific Phenotypes

For 15 genes in this experiment

For nitrogen source L-Histidine in Agrobacterium fabrum C58

For nitrogen source L-Histidine across organisms