Experiment set3IT058 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Vancomycin Hydrochloride Hydrate 0.5 mg/ml

200 most important genes:

  gene name fitness t score description  
PfGW456L13_1368 -5.2 -5.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_3304 -4.6 -7.6 TPR domain protein in aerotolerance operon compare
PfGW456L13_3303 -4.4 -7.4 BatA (Bacteroides aerotolerance operon) compare
PfGW456L13_4859 -4.0 -5.5 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_1363 -4.0 -6.6 Rare lipoprotein A precursor compare
PfGW456L13_4836 -3.8 -10.6 Transglycosylase, Slt family compare
PfGW456L13_3305 -3.7 -5.1 BatD compare
PfGW456L13_207 -3.7 -5.3 InaA protein compare
PfGW456L13_1233 -3.6 -4.3 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_1845 -3.6 -3.4 Cold shock protein CspC compare
PfGW456L13_1735 -3.5 -4.1 Glycerol uptake facilitator protein compare
PfGW456L13_2084 -3.5 -4.4 MotA/TolQ/ExbB proton channel family protein compare
PfGW456L13_3301 -3.4 -8.3 hypothetical protein PA3071 compare
PfGW456L13_1300 -3.4 -6.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
PfGW456L13_275 -3.4 -2.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_845 -3.3 -9.9 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_4248 -3.3 -7.2 NLP/P60 family protein compare
PfGW456L13_773 -3.3 -7.7 Hydrogen peroxide-inducible genes activator compare
PfGW456L13_3300 -3.2 -12.4 MoxR-like ATPase in aerotolerance operon compare
PfGW456L13_4254 -3.2 -8.9 FIG00955360: hypothetical protein compare
PfGW456L13_4701 -3.2 -11.7 Membrane-associated zinc metalloprotease compare
PfGW456L13_5060 -3.1 -4.7 Peptide chain release factor 3 compare
PfGW456L13_1824 -3.1 -3.0 transcriptional regulator MvaT, P16 subunit compare
PfGW456L13_1972 -3.0 -3.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
PfGW456L13_2551 -2.9 -4.8 Cell division trigger factor (EC 5.2.1.8) compare
PfGW456L13_3302 -2.9 -1.6 FIG00954674: hypothetical protein compare
PfGW456L13_1838 -2.9 -6.1 Sensory box histidine kinase compare
PfGW456L13_4346 -2.9 -4.4 Hpt domain protein compare
PfGW456L13_1749 -2.9 -5.4 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_1538 -2.8 -12.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
PfGW456L13_4038 -2.8 -3.7 DNA topoisomerase I (EC 5.99.1.2) compare
PfGW456L13_854 -2.7 -4.0 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_2011 -2.7 -8.0 Transcriptional regulatory protein PhoP compare
PfGW456L13_5011 -2.7 -2.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
PfGW456L13_5150 -2.7 -4.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_3936 -2.7 -6.3 Colicin V production protein compare
PfGW456L13_1236 -2.7 -12.7 Cell wall endopeptidase, family M23/M37 compare
PfGW456L13_913 -2.7 -9.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_2623 -2.6 -3.0 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
PfGW456L13_601 -2.6 -7.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_4365 -2.6 -3.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
PfGW456L13_3291 -2.6 -2.9 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
PfGW456L13_644 -2.5 -8.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
PfGW456L13_4125 -2.5 -3.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
PfGW456L13_1852 -2.5 -7.4 Holliday junction DNA helicase RuvA compare
PfGW456L13_276 -2.5 -1.4 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_274 -2.5 -12.7 DamX, an inner membrane protein involved in bile resistance compare
PfGW456L13_5005 -2.5 -5.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
PfGW456L13_430 -2.5 -9.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
PfGW456L13_1834 -2.5 -9.0 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_1889 -2.4 -3.2 Phosphogluconate dehydratase (EC 4.2.1.12) compare
PfGW456L13_656 -2.4 -3.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_1850 -2.3 -9.3 FIG000859: hypothetical protein YebC compare
PfGW456L13_1020 -2.3 -7.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
PfGW456L13_4165 -2.3 -4.4 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_2956 -2.3 -7.0 Transcriptional regulatory protein RstA compare
PfGW456L13_198 -2.3 -12.0 acyltransferase family protein compare
PfGW456L13_742 -2.3 -4.4 Aspartate ammonia-lyase (EC 4.3.1.1) compare
PfGW456L13_772 -2.2 -7.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
PfGW456L13_5006 -2.2 -2.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_787 -2.2 -9.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
PfGW456L13_1492 -2.2 -5.0 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
PfGW456L13_4668 -2.1 -5.4 RecA protein compare
PfGW456L13_5067 -2.1 -10.3 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
PfGW456L13_1535 -2.1 -12.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) conserved
PfGW456L13_140 -2.1 -5.9 FIG003573: hypothetical protein compare
PfGW456L13_3894 -2.1 -2.6 Integration host factor alpha subunit compare
PfGW456L13_282 -2.1 -11.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
PfGW456L13_2176 -2.1 -7.5 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_1853 -2.0 -3.9 Holliday junction DNA helicase RuvB compare
PfGW456L13_2554 -2.0 -7.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
PfGW456L13_753 -2.0 -12.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
PfGW456L13_2602 -2.0 -9.9 putative exported protein compare
PfGW456L13_59 -2.0 -6.7 Sensor histidine kinase/response regulator compare
PfGW456L13_329 -2.0 -5.9 Histidine utilization repressor compare
PfGW456L13_50 -2.0 -8.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
PfGW456L13_1539 -2.0 -8.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
PfGW456L13_1842 -2.0 -9.7 Outer membrane porin, OprD family compare
PfGW456L13_427 -2.0 -2.5 Two-component system response regulator OmpR compare
PfGW456L13_1628 -2.0 -6.6 ATPase, AFG1 family compare
PfGW456L13_1973 -2.0 -5.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
PfGW456L13_2885 -1.9 -8.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
PfGW456L13_4599 -1.9 -6.8 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
PfGW456L13_2636 -1.9 -5.8 FIG002776: hypothetical protein compare
PfGW456L13_1612 -1.9 -3.5 FIG00956396: hypothetical protein compare
PfGW456L13_3341 -1.9 -7.5 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) conserved
PfGW456L13_5008 -1.9 -2.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_2010 -1.9 -7.9 outer membrane protein H1 compare
PfGW456L13_1975 -1.9 -3.8 Succinylarginine dihydrolase (EC 3.5.3.23) compare
PfGW456L13_1479 -1.8 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
PfGW456L13_355 -1.8 -5.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
PfGW456L13_5086 -1.8 -3.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
PfGW456L13_1642 -1.8 -6.9 LppC putative lipoprotein compare
PfGW456L13_1863 -1.8 -7.4 Quinolinate synthetase (EC 2.5.1.72) compare
PfGW456L13_2957 -1.8 -4.5 Sensory histidine kinase QseC compare
PfGW456L13_3991 -1.8 -10.4 Capsular polysaccharide biosynthesis protein compare
PfGW456L13_4253 -1.8 -3.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
PfGW456L13_1192 -1.8 -2.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
PfGW456L13_4424 -1.8 -4.0 FIG00953416: hypothetical protein compare
PfGW456L13_754 -1.7 -10.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
PfGW456L13_751 -1.7 -4.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
PfGW456L13_793 -1.7 -2.6 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_565 -1.7 -5.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
PfGW456L13_367 -1.7 -3.2 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
PfGW456L13_1580 -1.7 -7.8 FIG140336: TPR domain protein compare
PfGW456L13_1773 -1.7 -5.2 putative exported protein compare
PfGW456L13_2095 -1.7 -2.7 Ribonuclease E (EC 3.1.26.12) compare
PfGW456L13_756 -1.6 -4.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
PfGW456L13_4512 -1.6 -7.1 Exported zinc metalloprotease YfgC precursor compare
PfGW456L13_2763 -1.6 -2.9 putative tellurium resistance protein compare
PfGW456L13_4207 -1.6 -6.3 Periplasmic protease compare
PfGW456L13_2651 -1.6 -4.6 Cell division protein FtsK compare
PfGW456L13_4581 -1.6 -11.6 RND efflux system, inner membrane transporter CmeB compare
PfGW456L13_875 -1.6 -2.7 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_4451 -1.6 -4.6 ATP-dependent RNA helicase SrmB compare
PfGW456L13_350 -1.6 -5.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
PfGW456L13_2601 -1.6 -9.2 Uncharacterized protein YtfM precursor compare
PfGW456L13_4580 -1.6 -6.5 Multidrug efflux RND membrane fusion protein MexC compare
PfGW456L13_4642 -1.5 -1.7 Cold shock protein CspA compare
PfGW456L13_3989 -1.5 -2.9 FIG00964275: hypothetical protein compare
PfGW456L13_2029 -1.5 -10.6 BarA sensory histidine kinase (= VarS = GacS) compare
PfGW456L13_3704 -1.5 -2.6 Transcriptional regulator RpiR in protein degradation cluster compare
PfGW456L13_3232 -1.5 -1.9 hypothetical protein compare
PfGW456L13_1774 -1.4 -4.1 Iron-regulated protein A precursor compare
PfGW456L13_3990 -1.4 -3.6 Response regulator receiver domain protein (CheY) compare
PfGW456L13_4582 -1.4 -4.1 RND efflux system, outer membrane lipoprotein CmeC compare
PfGW456L13_2556 -1.4 -2.2 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
PfGW456L13_595 -1.4 -3.6 FIG00953549: hypothetical protein compare
PfGW456L13_2314 -1.4 -2.3 ABC-type proline/glycine betaine transport systems, ATPase components compare
PfGW456L13_1984 -1.4 -2.5 Mg/Co/Ni transporter MgtE / CBS domain compare
PfGW456L13_724 -1.4 -10.5 ATP-dependent DNA helicase UvrD/PcrA compare
PfGW456L13_4517 -1.4 -9.2 L-aspartate oxidase (EC 1.4.3.16) compare
PfGW456L13_4842 -1.4 -2.7 Translation elongation factor LepA compare
PfGW456L13_842 -1.4 -3.7 Tyrosine recombinase XerC compare
PfGW456L13_1813 -1.4 -5.5 Pyruvate kinase (EC 2.7.1.40) compare
PfGW456L13_673 -1.4 -7.6 Chromosome (plasmid) partitioning protein ParA compare
PfGW456L13_1050 -1.4 -7.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
PfGW456L13_4882 -1.4 -2.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
PfGW456L13_2603 -1.3 -1.9 Transcriptional regulator, MarR family compare
PfGW456L13_1848 -1.3 -1.0 hypothetical protein compare
PfGW456L13_1021 -1.3 -3.6 Glutathione synthetase (EC 6.3.2.3) compare
PfGW456L13_1382 -1.3 -5.3 FOG: TPR repeat, SEL1 subfamily compare
PfGW456L13_779 -1.3 -7.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
PfGW456L13_1160 -1.3 -6.2 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
PfGW456L13_621 -1.3 -3.4 hypothetical protein compare
PfGW456L13_566 -1.3 -5.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
PfGW456L13_4875 -1.3 -3.1 Serine acetyltransferase (EC 2.3.1.30) compare
PfGW456L13_4665 -1.3 -1.6 FIG00957354: hypothetical protein compare
PfGW456L13_4413 -1.2 -6.5 Potassium uptake protein TrkH compare
PfGW456L13_2025 -1.2 -4.4 Cytochrome c-type biogenesis protein ResA compare
PfGW456L13_594 -1.2 -3.9 DNA polymerase I (EC 2.7.7.7) compare
PfGW456L13_2608 -1.2 -1.6 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
PfGW456L13_4419 -1.2 -1.9 Permeases of the drug/metabolite transporter (DMT) superfamily compare
PfGW456L13_2649 -1.2 -2.3 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
PfGW456L13_2826 -1.2 -1.6 hypothetical protein compare
PfGW456L13_4012 -1.2 -1.9 VacJ-like lipoprotein precursor compare
PfGW456L13_2450 -1.2 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_812 -1.2 -2.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
PfGW456L13_1574 -1.2 -3.2 GTP-binding and nucleic acid-binding protein YchF compare
PfGW456L13_5017 -1.2 -3.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
PfGW456L13_2552 -1.2 -5.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_4621 -1.1 -3.5 OmpA family protein compare
PfGW456L13_674 -1.1 -4.0 Chromosome (plasmid) partitioning protein ParB compare
PfGW456L13_1655 -1.1 -1.8 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
PfGW456L13_1362 -1.1 -4.2 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
PfGW456L13_2436 -1.1 -3.5 Phenylacetic acid degradation operon negative regulatory protein PaaX compare
PfGW456L13_1344 -1.1 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
PfGW456L13_4003 -1.1 -4.0 YjbG polysaccharide synthesis-related protein compare
PfGW456L13_3124 -1.1 -2.4 hypothetical protein compare
PfGW456L13_347 -1.1 -4.0 Nitrogen regulation protein NR(I) compare
PfGW456L13_778 -1.1 -6.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_3973 -1.1 -3.5 hypothetical protein compare
PfGW456L13_653 -1.1 -5.7 Trk system potassium uptake protein TrkA compare
PfGW456L13_4492 -1.1 -2.7 YcgN (Fragment) compare
PfGW456L13_4838 -1.1 -4.8 DNA recombination and repair protein RecO compare
PfGW456L13_1108 -1.1 -2.5 hypothetical protein compare
PfGW456L13_4400 -1.0 -7.6 Aromatic amino acid transport protein AroP compare
PfGW456L13_577 -1.0 -6.3 Fused spore maturation proteins A and B compare
PfGW456L13_2394 -1.0 -3.4 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily compare
PfGW456L13_4042 -1.0 -2.0 FIG00953628: hypothetical protein compare
PfGW456L13_2631 -1.0 -2.1 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
PfGW456L13_4507 -1.0 -1.7 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
PfGW456L13_2496 -1.0 -1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
PfGW456L13_179 -1.0 -5.7 Putative esterase, FIGfam005057 compare
PfGW456L13_1009 -1.0 -1.7 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
PfGW456L13_1690 -1.0 -2.8 Molybdenum cofactor biosynthesis protein MoaD compare
PfGW456L13_1386 -1.0 -8.9 Sensor histidine kinase compare
PfGW456L13_3327 -1.0 -2.1 FIG00954117: hypothetical protein compare
PfGW456L13_240 -1.0 -2.8 FIG143263: Glycosyl transferase compare
PfGW456L13_1281 -1.0 -6.9 Catalase (EC 1.11.1.6) compare
PfGW456L13_3299 -1.0 -2.2 FIG00954580: hypothetical protein compare
PfGW456L13_1536 -1.0 -3.5 FOG: TPR repeat compare
PfGW456L13_2237 -1.0 -1.7 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_4667 -1.0 -1.6 Regulatory protein RecX compare
PfGW456L13_2504 -1.0 -2.5 4-oxalocrotonate decarboxylase (EC 4.1.1.77) compare
PfGW456L13_4001 -1.0 -6.6 Polysaccharide export lipoprotein Wza compare
PfGW456L13_3398 -1.0 -1.7 Transcriptional regulator, TetR family compare
PfGW456L13_2538 -1.0 -1.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
PfGW456L13_1865 -1.0 -1.5 Cold shock protein CspA compare
PfGW456L13_1860 -1.0 -5.1 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare


Specific Phenotypes

For 12 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pseudomonas fluorescens GW456-L13

For stress Vancomycin Hydrochloride Hydrate across organisms