Experiment set3IT057 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Vancomycin Hydrochloride Hydrate 0.25 mg/ml

200 most important genes:

  gene name fitness t score description  
PfGW456L13_1368 -5.2 -5.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_3301 -4.2 -7.4 hypothetical protein PA3071 compare
PfGW456L13_1363 -4.1 -6.2 Rare lipoprotein A precursor compare
PfGW456L13_4038 -4.1 -2.8 DNA topoisomerase I (EC 5.99.1.2) compare
PfGW456L13_4836 -4.0 -9.7 Transglycosylase, Slt family compare
PfGW456L13_5011 -3.9 -3.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
PfGW456L13_4859 -3.6 -4.9 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_2385 -3.6 -3.4 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
PfGW456L13_845 -3.5 -9.6 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_793 -3.5 -4.1 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_1845 -3.5 -3.4 Cold shock protein CspC compare
PfGW456L13_3305 -3.4 -5.1 BatD compare
PfGW456L13_3304 -3.4 -8.8 TPR domain protein in aerotolerance operon compare
PfGW456L13_275 -3.3 -2.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_1655 -3.3 -3.2 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
PfGW456L13_3303 -3.3 -8.0 BatA (Bacteroides aerotolerance operon) compare
PfGW456L13_913 -3.2 -9.4 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_3300 -3.2 -11.7 MoxR-like ATPase in aerotolerance operon compare
PfGW456L13_773 -3.2 -9.9 Hydrogen peroxide-inducible genes activator compare
PfGW456L13_854 -3.1 -4.2 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_1824 -3.0 -3.0 transcriptional regulator MvaT, P16 subunit compare
PfGW456L13_5060 -3.0 -4.9 Peptide chain release factor 3 compare
PfGW456L13_2608 -3.0 -3.0 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
PfGW456L13_1236 -2.9 -13.1 Cell wall endopeptidase, family M23/M37 compare
PfGW456L13_1735 -2.9 -4.7 Glycerol uptake facilitator protein compare
PfGW456L13_1749 -2.8 -5.1 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_4668 -2.7 -6.5 RecA protein compare
PfGW456L13_1972 -2.6 -3.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
PfGW456L13_4701 -2.6 -11.3 Membrane-associated zinc metalloprotease compare
PfGW456L13_3936 -2.5 -6.4 Colicin V production protein compare
PfGW456L13_4254 -2.5 -8.3 FIG00955360: hypothetical protein compare
PfGW456L13_656 -2.5 -4.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_1233 -2.5 -5.1 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_4365 -2.5 -4.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
PfGW456L13_59 -2.4 -6.6 Sensor histidine kinase/response regulator compare
PfGW456L13_2237 -2.3 -3.0 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_1834 -2.3 -7.7 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_1889 -2.3 -3.3 Phosphogluconate dehydratase (EC 4.2.1.12) compare
PfGW456L13_4248 -2.3 -6.3 NLP/P60 family protein compare
PfGW456L13_5005 -2.2 -5.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
PfGW456L13_2011 -2.1 -5.4 Transcriptional regulatory protein PhoP compare
PfGW456L13_4012 -2.1 -2.4 VacJ-like lipoprotein precursor compare
PfGW456L13_1852 -2.1 -6.6 Holliday junction DNA helicase RuvA compare
PfGW456L13_605 -2.1 -2.7 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
PfGW456L13_1538 -2.1 -10.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
PfGW456L13_4842 -2.1 -3.3 Translation elongation factor LepA compare
PfGW456L13_274 -2.0 -9.3 DamX, an inner membrane protein involved in bile resistance compare
PfGW456L13_430 -2.0 -8.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
PfGW456L13_3302 -2.0 -1.2 FIG00954674: hypothetical protein compare
PfGW456L13_601 -1.9 -7.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_4165 -1.9 -3.4 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_756 -1.8 -4.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
PfGW456L13_1984 -1.8 -2.6 Mg/Co/Ni transporter MgtE / CBS domain compare
PfGW456L13_2623 -1.8 -2.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
PfGW456L13_1192 -1.8 -3.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
PfGW456L13_5067 -1.7 -8.2 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
PfGW456L13_207 -1.7 -5.0 InaA protein compare
PfGW456L13_4424 -1.7 -4.4 FIG00953416: hypothetical protein compare
PfGW456L13_2885 -1.7 -7.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
PfGW456L13_644 -1.7 -6.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
PfGW456L13_2551 -1.7 -3.5 Cell division trigger factor (EC 5.2.1.8) compare
PfGW456L13_1774 -1.7 -5.1 Iron-regulated protein A precursor compare
PfGW456L13_875 -1.7 -5.0 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_2957 -1.7 -4.5 Sensory histidine kinase QseC compare
PfGW456L13_1838 -1.7 -5.1 Sensory box histidine kinase compare
PfGW456L13_198 -1.7 -10.7 acyltransferase family protein compare
PfGW456L13_852 -1.6 -1.9 FIG00954215: hypothetical protein compare
PfGW456L13_812 -1.6 -3.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
PfGW456L13_276 -1.6 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_1853 -1.6 -4.0 Holliday junction DNA helicase RuvB compare
PfGW456L13_5008 -1.6 -2.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_139 -1.6 -2.4 LSU ribosomal protein L9p compare
PfGW456L13_1539 -1.6 -6.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
PfGW456L13_329 -1.6 -3.1 Histidine utilization repressor compare
PfGW456L13_772 -1.5 -4.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
PfGW456L13_1574 -1.5 -3.8 GTP-binding and nucleic acid-binding protein YchF compare
PfGW456L13_5086 -1.5 -3.8 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
PfGW456L13_1975 -1.5 -3.3 Succinylarginine dihydrolase (EC 3.5.3.23) compare
PfGW456L13_3704 -1.5 -3.6 Transcriptional regulator RpiR in protein degradation cluster compare
PfGW456L13_3291 -1.4 -1.5 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
PfGW456L13_2084 -1.4 -2.3 MotA/TolQ/ExbB proton channel family protein compare
PfGW456L13_2554 -1.4 -6.5 ATP-dependent protease La (EC 3.4.21.53) Type I compare
PfGW456L13_1528 -1.4 -1.8 C4-type zinc finger protein, DksA/TraR family compare
PfGW456L13_1848 -1.4 -1.6 hypothetical protein compare
PfGW456L13_1936 -1.4 -2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PfGW456L13_50 -1.4 -5.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
PfGW456L13_140 -1.4 -3.7 FIG003573: hypothetical protein compare
PfGW456L13_2632 -1.4 -2.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
PfGW456L13_1021 -1.4 -4.3 Glutathione synthetase (EC 6.3.2.3) compare
PfGW456L13_4346 -1.4 -3.3 Hpt domain protein compare
PfGW456L13_4582 -1.4 -4.9 RND efflux system, outer membrane lipoprotein CmeC compare
PfGW456L13_594 -1.4 -3.4 DNA polymerase I (EC 2.7.7.7) compare
PfGW456L13_1300 -1.4 -3.1 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
PfGW456L13_4451 -1.3 -4.1 ATP-dependent RNA helicase SrmB compare
PfGW456L13_2631 -1.3 -2.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
PfGW456L13_4207 -1.3 -5.0 Periplasmic protease compare
PfGW456L13_2176 -1.3 -5.2 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_787 -1.3 -6.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
PfGW456L13_1479 -1.3 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
PfGW456L13_1020 -1.3 -4.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
PfGW456L13_350 -1.3 -3.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
PfGW456L13_581 -1.3 -2.2 hypothetical protein compare
PfGW456L13_1842 -1.3 -6.7 Outer membrane porin, OprD family compare
PfGW456L13_753 -1.3 -8.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
PfGW456L13_1362 -1.2 -6.2 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
PfGW456L13_2956 -1.2 -5.0 Transcriptional regulatory protein RstA compare
PfGW456L13_4599 -1.2 -4.8 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
PfGW456L13_779 -1.2 -7.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
PfGW456L13_3341 -1.2 -5.4 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) conserved
PfGW456L13_1850 -1.2 -5.5 FIG000859: hypothetical protein YebC compare
PfGW456L13_2996 -1.2 -2.4 Nuclease inhibitor compare
PfGW456L13_595 -1.2 -2.7 FIG00953549: hypothetical protein compare
PfGW456L13_2651 -1.2 -3.3 Cell division protein FtsK compare
PfGW456L13_5112 -1.2 -1.9 tmRNA-binding protein SmpB compare
PfGW456L13_4667 -1.2 -2.1 Regulatory protein RecX compare
PfGW456L13_5150 -1.2 -1.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_751 -1.2 -3.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
PfGW456L13_5006 -1.1 -1.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_144 -1.1 -4.3 3'-to-5' exoribonuclease RNase R compare
PfGW456L13_2889 -1.1 -2.1 hypothetical protein compare
PfGW456L13_842 -1.1 -3.8 Tyrosine recombinase XerC compare
PfGW456L13_4581 -1.1 -8.2 RND efflux system, inner membrane transporter CmeB compare
PfGW456L13_2025 -1.1 -4.1 Cytochrome c-type biogenesis protein ResA compare
PfGW456L13_4507 -1.1 -2.4 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
PfGW456L13_1492 -1.1 -3.1 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
PfGW456L13_3181 -1.1 -1.7 Organic hydroperoxide resistance protein compare
PfGW456L13_355 -1.1 -4.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
PfGW456L13_754 -1.1 -7.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
PfGW456L13_2552 -1.1 -4.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_4642 -1.1 -1.2 Cold shock protein CspA compare
PfGW456L13_1773 -1.1 -4.1 putative exported protein compare
PfGW456L13_2029 -1.1 -7.6 BarA sensory histidine kinase (= VarS = GacS) compare
PfGW456L13_3577 -1.1 -0.9 hypothetical protein compare
PfGW456L13_4026 -1.1 -1.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
PfGW456L13_1863 -1.1 -5.2 Quinolinate synthetase (EC 2.5.1.72) compare
PfGW456L13_5003 -1.0 -1.7 YrbA protein compare
PfGW456L13_133 -1.0 -3.5 FIG00956548: hypothetical protein compare
PfGW456L13_4580 -1.0 -3.9 Multidrug efflux RND membrane fusion protein MexC compare
PfGW456L13_1982 -1.0 -1.9 Carbon storage regulator compare
PfGW456L13_4961 -1.0 -4.2 Fumarylacetoacetase (EC 3.7.1.2) compare
PfGW456L13_4162 -1.0 -2.4 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
PfGW456L13_4621 -1.0 -3.5 OmpA family protein compare
PfGW456L13_5121 -1.0 -1.0 hypothetical protein compare
PfGW456L13_1612 -1.0 -2.3 FIG00956396: hypothetical protein compare
PfGW456L13_724 -1.0 -7.9 ATP-dependent DNA helicase UvrD/PcrA compare
PfGW456L13_1160 -1.0 -4.1 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
PfGW456L13_4511 -1.0 -1.8 Rhodanese-like domain protein compare
PfGW456L13_4641 -1.0 -1.3 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
PfGW456L13_1498 -1.0 -1.8 FIG060329: MOSC domain protein compare
PfGW456L13_3348 -0.9 -1.5 Transcriptional regulator compare
PfGW456L13_2763 -0.9 -2.4 putative tellurium resistance protein compare
PfGW456L13_565 -0.9 -3.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
PfGW456L13_3466 -0.9 -1.5 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
PfGW456L13_3989 -0.9 -2.3 FIG00964275: hypothetical protein compare
PfGW456L13_2636 -0.9 -3.2 FIG002776: hypothetical protein compare
PfGW456L13_674 -0.9 -3.4 Chromosome (plasmid) partitioning protein ParB compare
PfGW456L13_1419 -0.9 -3.9 Transcriptional regulator, IclR family compare
PfGW456L13_2010 -0.9 -4.1 outer membrane protein H1 compare
PfGW456L13_2682 -0.9 -2.6 Gll0911 protein compare
PfGW456L13_427 -0.9 -1.1 Two-component system response regulator OmpR compare
PfGW456L13_2547 -0.9 -3.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_994 -0.9 -1.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
PfGW456L13_2603 -0.9 -1.6 Transcriptional regulator, MarR family compare
PfGW456L13_3598 -0.9 -2.1 hypothetical protein compare
PfGW456L13_3124 -0.9 -2.2 hypothetical protein compare
PfGW456L13_3052 -0.9 -1.7 Response regulator compare
PfGW456L13_5048 -0.9 -1.4 Dna binding response regulator PrrA (RegA) compare
PfGW456L13_653 -0.9 -4.4 Trk system potassium uptake protein TrkA compare
PfGW456L13_4979 -0.9 -2.8 Dihydroneopterin triphosphate epimerase compare
PfGW456L13_4517 -0.9 -5.8 L-aspartate oxidase (EC 1.4.3.16) compare
PfGW456L13_5037 -0.8 -3.0 Rare lipoprotein A compare
PfGW456L13_2648 -0.8 -3.8 Arginine-tRNA-protein transferase (EC 2.3.2.8) compare
PfGW456L13_3641 -0.8 -1.4 hypothetical protein compare
PfGW456L13_2556 -0.8 -1.8 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
PfGW456L13_1916 -0.8 -1.9 hypothetical protein compare
PfGW456L13_4412 -0.8 -2.0 Nitroreductase family protein compare
PfGW456L13_1580 -0.8 -4.5 FIG140336: TPR domain protein compare
PfGW456L13_4863 -0.8 -1.6 FIG021952: putative membrane protein compare
PfGW456L13_4400 -0.8 -6.1 Aromatic amino acid transport protein AroP compare
PfGW456L13_4033 -0.8 -1.4 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
PfGW456L13_566 -0.8 -4.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
PfGW456L13_1734 -0.8 -4.8 Glycerol kinase (EC 2.7.1.30) compare
PfGW456L13_1386 -0.8 -7.2 Sensor histidine kinase compare
PfGW456L13_1544 -0.8 -3.0 Paraquat-inducible protein A compare
PfGW456L13_5241 -0.8 -1.5 tRNA-Thr-CGT compare
PfGW456L13_1312 -0.8 -2.8 Ribonucleotide reductase transcriptional regulator NrdR compare
PfGW456L13_2487 -0.8 -2.0 FIG00961567: hypothetical protein compare
PfGW456L13_4838 -0.8 -2.7 DNA recombination and repair protein RecO compare
PfGW456L13_2429 -0.8 -1.6 hypothetical protein compare
PfGW456L13_1973 -0.8 -3.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
PfGW456L13_1865 -0.8 -0.9 Cold shock protein CspA compare
PfGW456L13_2436 -0.8 -2.7 Phenylacetic acid degradation operon negative regulatory protein PaaX compare
PfGW456L13_3919 -0.8 -4.0 Probable transmembrane protein compare
PfGW456L13_1851 -0.8 -2.6 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
PfGW456L13_3372 -0.8 -2.1 hypothetical protein compare
PfGW456L13_3905 -0.8 -1.0 hypothetical protein compare
PfGW456L13_1453 -0.7 -5.4 Glutathione-regulated potassium-efflux system ATP-binding protein compare
PfGW456L13_3452 -0.7 -2.7 hypothetical protein compare
PfGW456L13_4513 -0.7 -1.7 HtrA protease/chaperone protein compare
PfGW456L13_4882 -0.7 -1.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare


Specific Phenotypes

For 1 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pseudomonas fluorescens GW456-L13

For stress Vancomycin Hydrochloride Hydrate across organisms