Experiment set3IT057 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF3901 -2.2 -4.1 Phosphomannomutase (EC 5.4.2.8) compare
GFF3905 -2.2 -9.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
GFF1808 -2.2 -5.5 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF2968 -2.0 -4.6 Stringent starvation protein A compare
GFF3887 -1.9 -8.4 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF4126 -1.9 -1.2 FIG01047407: hypothetical protein compare
GFF3886 -1.8 -6.5 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF3888 -1.8 -4.6 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF2031 -1.6 -1.8 FIG01046611: hypothetical protein compare
GFF2431 -1.6 -3.2 Chaperone protein HscA compare
GFF389 -1.6 -2.5 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF1699 -1.6 -2.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF824 -1.5 -2.8 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF3890 -1.4 -2.2 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF1334 -1.3 -1.4 Uncharacterized protein YohL compare
GFF360 -1.3 -1.7 hypothetical protein compare
GFF1815 -1.3 -2.6 Electron transport complex protein RnfA compare
GFF1554 -1.3 -4.0 Putative transcriptional regulator compare
GFF2119 -1.2 -2.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF3985 -1.2 -1.0 Integrase compare
GFF2907 -1.2 -4.7 HTH-type transcriptional regulator hdfR compare
GFF87 -1.2 -2.1 C4-type zinc finger protein, DksA/TraR family compare
GFF1234 -1.1 -1.5 hypothetical protein compare
GFF34 -1.1 -2.8 FIG01280259: hypothetical protein compare
GFF3054 -1.1 -6.7 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
GFF4788 -1.1 -5.1 RNA polymerase sigma factor RpoS compare
GFF4519 -1.0 -1.7 Universal stress protein G compare
GFF3183 -1.0 -1.4 FIG01046167: hypothetical protein compare
GFF3506 -1.0 -1.8 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF973 -1.0 -1.7 FIG074102: hypothetical protein compare
GFF3323 -1.0 -1.3 Putative curli production protein CsgC compare
GFF773 -1.0 -1.3 probable lipoprotein compare
GFF714 -1.0 -3.4 Mn-dependent transcriptional regulator MntR compare
GFF633 -1.0 -3.9 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF716 -1.0 -3.8 L,D-transpeptidase YbiS compare
GFF2395 -1.0 -1.9 Similar to C-terminal Zn-finger domain of DNA topoisomerase I compare
GFF4118 -1.0 -1.6 tRNA-Thr-CGT compare
GFF2906 -1.0 -2.7 Protein yifE compare
GFF3515 -1.0 -1.6 FIG00637864: hypothetical protein compare
GFF4601 -1.0 -5.0 Phosphoglucomutase (EC 5.4.2.2) compare
GFF3149 -0.9 -6.4 Type I secretion outer membrane protein, TolC precursor compare
GFF3502 -0.9 -0.9 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF4061 -0.9 -0.9 putative periplasmic protein compare
GFF339 -0.9 -3.2 YqeJ protein compare
GFF2880 -0.9 -3.8 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF616 -0.9 -1.4 hypothetical protein compare
GFF1747 -0.9 -1.5 putative inner membrane protein compare
GFF4160 -0.9 -2.9 UPF0125 protein yfjF compare
GFF3613 -0.9 -5.0 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
GFF3570 -0.9 -0.9 FIG074102: hypothetical protein compare
GFF4916 -0.9 -1.0 FIG00639119: hypothetical protein compare
GFF975 -0.8 -1.5 FIG074102: hypothetical protein compare
GFF746 -0.8 -1.8 Putative permease compare
GFF2847 -0.8 -3.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
GFF3789 -0.8 -3.3 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) compare
GFF4036 -0.8 -1.9 tRNA-Ser-CGA compare
GFF1621 -0.8 -1.3 DNA polymerase III theta subunit (EC 2.7.7.7) compare
GFF352 -0.8 -1.2 FIG01048298: hypothetical protein compare
GFF2758 -0.8 -1.2 FIG01045187: hypothetical protein compare
GFF1415 -0.8 -0.8 UPF0337 protein yjbJ compare
GFF2882 -0.8 -4.8 Lipopolysaccharide biosynthesis protein RffA compare
GFF233 -0.8 -2.3 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF3566 -0.8 -2.0 major outer membrane lipoprotein compare
GFF1311 -0.8 -5.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
GFF3146 -0.8 -2.9 '3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)' transl_table=11 compare
GFF2249 -0.8 -1.6 Putative merR family bacterial regulatory protein compare
GFF1338 -0.8 -2.1 Putative outer membrane protein compare
GFF2633 -0.8 -2.9 FMN-dependent NADH-azoreductase compare
GFF2196 -0.8 -2.8 Transaldolase (EC 2.2.1.2) compare
GFF3513 -0.8 -1.9 Putative membrane protein compare
GFF1884 -0.8 -1.1 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF2475 -0.8 -1.8 Ribonuclease III (EC 3.1.26.3) compare
GFF3324 -0.8 -0.8 putative periplasmic protein compare
GFF870 -0.7 -3.6 FIG00614015: hypothetical protein compare
GFF3762 -0.7 -1.8 Putative membrane protein compare
GFF3733 -0.7 -2.8 Phage tail fiber protein compare
GFF2698 -0.7 -4.3 Exoribonuclease II (EC 3.1.13.1) compare
GFF775 -0.7 -3.8 putative excisionase compare
GFF2154 -0.7 -1.2 L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) compare
GFF3781 -0.7 -1.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF3931 -0.7 -1.9 Propanediol utilization polyhedral body protein PduT compare
GFF2949 -0.7 -3.2 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
GFF2669 -0.7 -2.6 Putative outer membrane lipoprotein compare
GFF4270 -0.7 -0.6 FIG00637869: hypothetical protein compare
GFF4417 -0.7 -1.2 Methionine ABC transporter ATP-binding protein compare
GFF156 -0.7 -1.0 rRNA small subunit methyltransferase H compare
GFF3087 -0.7 -2.6 FIG074102: hypothetical protein compare
GFF4579 -0.7 -3.9 tRNA-i(6)A37 methylthiotransferase compare
GFF645 -0.7 -0.9 Membrane protein associated with oxaloacetate decarboxylase compare
GFF3990 -0.7 -1.0 hypothetical protein compare
GFF2201 -0.7 -2.6 putative DNA-binding protein compare
GFF3409 -0.7 -2.3 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
GFF4683 -0.7 -1.9 Phage minor tail protein compare
GFF4621 -0.7 -1.1 putative inner membrane protein compare
GFF2881 -0.7 -3.8 WzxE protein compare
GFF4537 -0.7 -1.4 CrcB protein compare
GFF3603 -0.7 -1.5 Secretion system apparatus protein SsaM compare
GFF1015 -0.7 -2.8 PTS system, mannose-specific IID component (EC 2.7.1.69) compare
GFF1033 -0.7 -1.7 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
GFF4789 -0.7 -3.0 Lipoprotein NlpD compare
GFF1734 -0.7 -3.1 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
GFF4837 -0.7 -4.7 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF3743 -0.7 -1.4 FIG01046717: hypothetical protein compare
GFF2750 -0.7 -2.1 Thymidine kinase (EC 2.7.1.21) compare
GFF3625 -0.7 -1.1 Transcriptional regulator, TetR family compare
GFF705 -0.7 -1.7 Glutamate transport membrane-spanning protein compare
GFF3591 -0.7 -2.0 Secretion system effector SseD compare
GFF3439 -0.7 -2.0 hypothetical protein compare
GFF1619 -0.7 -3.8 Copper resistance protein D compare
GFF4535 -0.7 -2.1 Lipid A acylation protein PagP, palmitoyltransferase compare
GFF338 -0.6 -4.4 Putative sensory transducer compare
GFF3772 -0.6 -1.0 1-phosphofructokinase (EC 2.7.1.56) compare
GFF4600 -0.6 -1.6 SeqA protein, negative modulator of initiation of replication compare
GFF1781 -0.6 -1.6 Putative binding-protein-dependent transport system compare
GFF3642 -0.6 -2.1 Electron transport complex protein RnfE compare
GFF597 -0.6 -1.5 DNA-damage-inducible protein J compare
GFF2110 -0.6 -1.6 Sigma factor RpoE regulatory protein RseC compare
GFF2433 -0.6 -3.2 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF772 -0.6 -2.4 Arginine ABC transporter, ATP-binding protein ArtP compare
GFF969 -0.6 -1.2 FIG007491: hypothetical protein YeeN compare
GFF3543 -0.6 -3.2 Electron transfer flavoprotein, alpha subunit compare
GFF3643 -0.6 -3.4 Electron transport complex protein RnfG compare
GFF204 -0.6 -3.0 Electron transfer flavoprotein, beta subunit FixA compare
GFF2551 -0.6 -3.7 Putative outer membrane or secreted lipoprotein compare
GFF1449 -0.6 -3.1 CidA-associated membrane protein CidB compare
GFF4103 -0.6 -3.4 probable exported protein STY0357 compare
GFF2537 -0.6 -1.1 hypothetical protein compare
GFF2530 -0.6 -2.1 putative transport protein compare
GFF4839 -0.6 -4.6 BarA sensory histidine kinase (= VarS = GacS) compare
GFF2461 -0.6 -4.8 Transglycosylase, Slt family compare
GFF255 -0.6 -1.5 hypothetical protein compare
GFF3621 -0.6 -1.6 Glutaredoxin-related protein compare
GFF4095 -0.6 -1.2 LysR-family transcriptional regulator SinR compare
GFF3154 -0.6 -1.9 Zinc transporter ZupT compare
GFF2845 -0.6 -1.8 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF1206 -0.6 -1.9 Putative GerE-family regulatory protein compare
GFF1981 -0.6 -0.8 FIG00638165: hypothetical protein compare
GFF3044 -0.6 -2.2 hypothetical protein compare
GFF415 -0.6 -1.6 FIG074102: hypothetical protein compare
GFF626 -0.6 -0.8 Type IV pilus biogenesis protein PilO compare
GFF2819 -0.6 -2.9 Ribonuclease D (EC 3.1.26.3) compare
GFF1591 -0.6 -1.7 Transcription repressor of tripartite multidrug resistance system compare
GFF2679 -0.6 -2.4 Transcriptional repressor protein TyrR compare
GFF2856 -0.6 -0.8 corresponds to STY1986 from Accession AL513382: Salmonella typhi CT18 compare
GFF1333 -0.6 -2.7 Serine transporter compare
GFF189 -0.6 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF1114 -0.6 -1.1 FIG01200701: possible membrane protein compare
GFF4761 -0.6 -2.0 Type III secretion system protein BsaR compare
GFF3946 -0.6 -2.6 Propanediol utilization polyhedral body protein PduB compare
GFF2573 -0.6 -1.2 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF1600 -0.6 -1.4 HAD-superfamily hydrolase, subfamily IA compare
GFF4619 -0.6 -1.1 hypothetical protein compare
GFF1715 -0.6 -1.6 Flavoprotein MioC compare
GFF1207 -0.6 -3.0 Probable regulatory protein compare
GFF4890 -0.6 -3.4 Transport ATP-binding protein CydC compare
GFF1339 -0.6 -3.3 Probable fimbrial chaperone protein compare
GFF374 -0.6 -2.6 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) compare
GFF4753 -0.6 -3.4 Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) compare
GFF2518 -0.6 -1.7 Putative dehydrogenase protein compare
GFF4058 -0.6 -1.5 Putative cytoplasmic protein USSDB7A compare
GFF4403 -0.6 -1.8 Probable secreted protein compare
GFF4513 -0.6 -1.6 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
GFF4670 -0.6 -2.0 FIG01049225: hypothetical protein compare
GFF2756 -0.5 -1.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF3518 -0.5 -0.8 putative outer membrane protein compare
GFF2973 -0.5 -2.7 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF1396 -0.5 -4.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3987 -0.5 -1.6 FIG01045245: hypothetical protein compare
GFF4759 -0.5 -2.1 Surface presentation of antigens protein SpaM compare
GFF3404 -0.5 -3.3 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) compare
GFF985 -0.5 -1.2 Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase compare
GFF2914 -0.5 -2.6 putative cytoplasmic protein compare
GFF928 -0.5 -3.1 Endoribonuclease L-PSP compare
GFF3274 -0.5 -2.2 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
GFF4766 -0.5 -0.7 Invasion protein invH precursor compare
GFF4847 -0.5 -4.0 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) compare
GFF159 -0.5 -1.3 hypothetical protein compare
GFF1861 -0.5 -2.9 Polymyxin resistance protein PmrJ, predicted deacetylase compare
GFF386 -0.5 -1.6 Lipopolysaccharide core biosynthesis protein RfaY compare
GFF4774 -0.5 -0.8 FIG074102: hypothetical protein compare
GFF4219 -0.5 -0.8 glycerol dehyrdratase activator compare
GFF1259 -0.5 -1.8 Error-prone repair protein UmuD compare
GFF2593 -0.5 -1.4 FIG00639831: hypothetical protein compare
GFF191 -0.5 -1.0 ApaG protein compare
GFF1463 -0.5 -3.4 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
GFF4817 -0.5 -1.5 Secreted protein compare
GFF4760 -0.5 -2.7 Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) compare
GFF1735 -0.5 -2.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
GFF1441 -0.5 -1.7 Regulatory protein SoxS compare
GFF4457 -0.5 -1.5 Fimbriae W protein compare
GFF465 -0.5 -3.1 Long polar fimbria protein A precursor compare
GFF3307 -0.5 -2.0 N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) compare
GFF1174 -0.5 -1.3 FIG00642834: hypothetical protein compare
GFF1674 -0.5 -1.9 Universal stress protein C compare
GFF4275 -0.5 -3.0 Putative inner membrane protein compare
GFF2269 -0.5 -1.0 hypothetical protein compare
GFF831 -0.5 -2.1 Nitrite-sensitive transcriptional repressor NsrR compare
GFF850 -0.5 -1.7 3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D) compare
GFF789 -0.5 -3.2 DNA primase (EC 2.7.7.-), phage-associated compare
GFF3071 -0.5 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage FelixO1_phage (old) across organisms