Experiment set3IT056 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Vancomycin Hydrochloride Hydrate 0.125 mg/ml

200 most important genes:

  gene name fitness t score description  
PfGW456L13_4859 -4.0 -5.4 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_1363 -4.0 -7.1 Rare lipoprotein A precursor compare
PfGW456L13_4836 -3.7 -10.9 Transglycosylase, Slt family compare
PfGW456L13_793 -3.4 -4.7 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_854 -3.3 -4.9 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_275 -3.0 -2.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_1735 -2.9 -5.1 Glycerol uptake facilitator protein compare
PfGW456L13_3301 -2.9 -6.7 hypothetical protein PA3071 compare
PfGW456L13_3303 -2.7 -8.5 BatA (Bacteroides aerotolerance operon) compare
PfGW456L13_773 -2.7 -10.7 Hydrogen peroxide-inducible genes activator compare
PfGW456L13_4254 -2.6 -7.4 FIG00955360: hypothetical protein compare
PfGW456L13_4668 -2.6 -6.8 RecA protein compare
PfGW456L13_845 -2.6 -10.5 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_3300 -2.5 -12.1 MoxR-like ATPase in aerotolerance operon compare
PfGW456L13_5060 -2.5 -6.2 Peptide chain release factor 3 compare
PfGW456L13_1368 -2.5 -5.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_1972 -2.4 -2.8 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
PfGW456L13_4038 -2.4 -3.7 DNA topoisomerase I (EC 5.99.1.2) compare
PfGW456L13_5006 -2.3 -2.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_4026 -2.3 -3.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
PfGW456L13_3304 -2.3 -8.9 TPR domain protein in aerotolerance operon compare
PfGW456L13_1233 -2.3 -4.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_4165 -2.3 -4.5 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_1845 -2.3 -3.7 Cold shock protein CspC compare
PfGW456L13_656 -2.2 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_59 -2.2 -7.3 Sensor histidine kinase/response regulator compare
PfGW456L13_1749 -2.2 -5.6 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_913 -2.2 -7.3 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_4365 -2.1 -4.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
PfGW456L13_5011 -2.1 -2.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
PfGW456L13_1852 -2.0 -7.1 Holliday junction DNA helicase RuvA compare
PfGW456L13_3302 -2.0 -2.0 FIG00954674: hypothetical protein compare
PfGW456L13_772 -2.0 -7.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
PfGW456L13_1853 -1.9 -4.3 Holliday junction DNA helicase RuvB compare
PfGW456L13_994 -1.9 -2.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
PfGW456L13_1838 -1.9 -6.0 Sensory box histidine kinase compare
PfGW456L13_1236 -1.9 -10.8 Cell wall endopeptidase, family M23/M37 compare
PfGW456L13_1655 -1.9 -2.9 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
PfGW456L13_50 -1.8 -8.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
PfGW456L13_1574 -1.8 -4.7 GTP-binding and nucleic acid-binding protein YchF compare
PfGW456L13_5150 -1.8 -3.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_2623 -1.7 -2.7 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
PfGW456L13_5005 -1.7 -5.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
PfGW456L13_3305 -1.7 -5.0 BatD compare
PfGW456L13_2237 -1.7 -2.6 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_2551 -1.7 -3.9 Cell division trigger factor (EC 5.2.1.8) compare
PfGW456L13_207 -1.7 -6.7 InaA protein compare
PfGW456L13_2084 -1.6 -4.0 MotA/TolQ/ExbB proton channel family protein compare
PfGW456L13_274 -1.6 -8.7 DamX, an inner membrane protein involved in bile resistance compare
PfGW456L13_4701 -1.6 -8.3 Membrane-associated zinc metalloprotease compare
PfGW456L13_1889 -1.6 -3.3 Phosphogluconate dehydratase (EC 4.2.1.12) compare
PfGW456L13_4042 -1.6 -2.5 FIG00953628: hypothetical protein compare
PfGW456L13_4207 -1.5 -6.3 Periplasmic protease compare
PfGW456L13_5086 -1.5 -4.3 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
PfGW456L13_644 -1.5 -6.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
PfGW456L13_4346 -1.4 -3.5 Hpt domain protein compare
PfGW456L13_2556 -1.4 -2.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
PfGW456L13_1192 -1.4 -2.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
PfGW456L13_601 -1.4 -6.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_1498 -1.4 -2.5 FIG060329: MOSC domain protein compare
PfGW456L13_5074 -1.3 -1.9 1-phosphofructokinase (EC 2.7.1.56) compare
PfGW456L13_5008 -1.3 -1.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_594 -1.3 -3.9 DNA polymerase I (EC 2.7.7.7) compare
PfGW456L13_1284 -1.3 -2.2 Putative transport protein compare
PfGW456L13_1863 -1.3 -6.8 Quinolinate synthetase (EC 2.5.1.72) compare
PfGW456L13_1847 -1.3 -1.1 Glycerate kinase (EC 2.7.1.31) compare
PfGW456L13_875 -1.2 -4.3 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_1824 -1.2 -1.9 transcriptional regulator MvaT, P16 subunit compare
PfGW456L13_2996 -1.2 -4.1 Nuclease inhibitor compare
PfGW456L13_1528 -1.2 -1.5 C4-type zinc finger protein, DksA/TraR family compare
PfGW456L13_144 -1.2 -3.8 3'-to-5' exoribonuclease RNase R compare
PfGW456L13_1834 -1.2 -5.2 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_1612 -1.2 -2.9 FIG00956396: hypothetical protein compare
PfGW456L13_140 -1.2 -3.2 FIG003573: hypothetical protein compare
PfGW456L13_2176 -1.2 -5.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_1842 -1.1 -7.0 Outer membrane porin, OprD family compare
PfGW456L13_1848 -1.1 -2.0 hypothetical protein compare
PfGW456L13_3936 -1.1 -3.8 Colicin V production protein compare
PfGW456L13_4842 -1.1 -1.9 Translation elongation factor LepA compare
PfGW456L13_1580 -1.1 -6.1 FIG140336: TPR domain protein compare
PfGW456L13_4248 -1.1 -3.3 NLP/P60 family protein compare
PfGW456L13_2150 -1.1 -2.8 Carbon storage regulator compare
PfGW456L13_1948 -1.1 -2.2 Transcriptional regulator, LysR family compare
PfGW456L13_3931 -1.1 -1.5 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
PfGW456L13_2011 -1.1 -4.1 Transcriptional regulatory protein PhoP compare
PfGW456L13_1690 -1.1 -3.0 Molybdenum cofactor biosynthesis protein MoaD compare
PfGW456L13_2956 -1.1 -4.4 Transcriptional regulatory protein RstA compare
PfGW456L13_2385 -1.1 -2.1 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
PfGW456L13_2552 -1.1 -4.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_355 -1.1 -3.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
PfGW456L13_4580 -1.0 -5.1 Multidrug efflux RND membrane fusion protein MexC compare
PfGW456L13_1009 -1.0 -1.4 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
PfGW456L13_1021 -1.0 -3.6 Glutathione synthetase (EC 6.3.2.3) compare
PfGW456L13_1523 -1.0 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
PfGW456L13_674 -1.0 -3.8 Chromosome (plasmid) partitioning protein ParB compare
PfGW456L13_4451 -1.0 -3.6 ATP-dependent RNA helicase SrmB compare
PfGW456L13_1538 -1.0 -6.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
PfGW456L13_1492 -1.0 -2.8 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
PfGW456L13_198 -1.0 -6.9 acyltransferase family protein compare
PfGW456L13_2763 -1.0 -1.9 putative tellurium resistance protein compare
PfGW456L13_1850 -1.0 -5.6 FIG000859: hypothetical protein YebC compare
PfGW456L13_4961 -0.9 -4.6 Fumarylacetoacetase (EC 3.7.1.2) compare
PfGW456L13_1973 -0.9 -3.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
PfGW456L13_3341 -0.9 -4.7 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) conserved
PfGW456L13_779 -0.9 -5.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
PfGW456L13_276 -0.9 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_818 -0.9 -2.9 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
PfGW456L13_3232 -0.9 -1.2 hypothetical protein compare
PfGW456L13_4400 -0.9 -6.7 Aromatic amino acid transport protein AroP compare
PfGW456L13_1738 -0.9 -3.2 Ferric iron ABC transporter, ATP-binding protein compare
PfGW456L13_4599 -0.9 -3.8 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
PfGW456L13_3718 -0.9 -2.6 Dihydrofolate reductase (EC 1.5.1.3) compare
PfGW456L13_4582 -0.9 -3.6 RND efflux system, outer membrane lipoprotein CmeC compare
PfGW456L13_1721 -0.9 -3.3 Tyrosine recombinase XerD compare
PfGW456L13_2768 -0.9 -2.1 FIG00959468: hypothetical protein compare
PfGW456L13_2037 -0.9 -2.7 nucleoprotein/polynucleotide-associated enzyme compare
PfGW456L13_4148 -0.9 -1.9 hypothetical protein compare
PfGW456L13_1099 -0.9 -1.8 FIG00953563: hypothetical protein compare
PfGW456L13_795 -0.9 -1.6 hypothetical protein compare
PfGW456L13_5082 -0.8 -3.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
PfGW456L13_3920 -0.8 -3.3 Carbonic anhydrase (EC 4.2.1.1) compare
PfGW456L13_1362 -0.8 -3.9 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
PfGW456L13_2424 -0.8 -1.2 Phenylacetate-CoA oxygenase, PaaJ subunit compare
PfGW456L13_151 -0.8 -2.0 HflC protein compare
PfGW456L13_4361 -0.8 -1.5 Flagellin protein FlaG compare
PfGW456L13_4517 -0.8 -5.9 L-aspartate oxidase (EC 1.4.3.16) compare
PfGW456L13_5067 -0.8 -4.7 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
PfGW456L13_1160 -0.8 -4.3 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
PfGW456L13_2707 -0.8 -1.0 FIG00953208: hypothetical protein compare
PfGW456L13_2925 -0.8 -1.5 Cointegrate resolution protein T compare
PfGW456L13_4424 -0.8 -2.0 FIG00953416: hypothetical protein compare
PfGW456L13_2314 -0.8 -1.6 ABC-type proline/glycine betaine transport systems, ATPase components compare
PfGW456L13_430 -0.8 -3.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
PfGW456L13_565 -0.8 -3.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
PfGW456L13_3000 -0.8 -1.4 FIG00961385: hypothetical protein compare
PfGW456L13_582 -0.8 -2.0 probable exported protein YPO0432 compare
PfGW456L13_4576 -0.8 -1.3 Transcriptional regulator, ArsR family compare
PfGW456L13_843 -0.8 -2.9 Protein of unknown function DUF484 compare
PfGW456L13_2538 -0.7 -1.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
PfGW456L13_2957 -0.7 -2.0 Sensory histidine kinase QseC compare
PfGW456L13_1465 -0.7 -2.0 hypothetical protein compare
PfGW456L13_1020 -0.7 -3.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
PfGW456L13_4595 -0.7 -2.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_1281 -0.7 -5.1 Catalase (EC 1.11.1.6) compare
PfGW456L13_3924 -0.7 -1.8 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
PfGW456L13_3704 -0.7 -2.3 Transcriptional regulator RpiR in protein degradation cluster compare
PfGW456L13_322 -0.7 -2.1 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
PfGW456L13_4425 -0.7 -3.1 FIG039061: hypothetical protein related to heme utilization compare
PfGW456L13_751 -0.7 -2.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
PfGW456L13_4233 -0.7 -1.4 Transcriptional regulator, MarR family compare
PfGW456L13_603 -0.7 -4.4 Methionine ABC transporter permease protein compare
PfGW456L13_2645 -0.7 -3.0 ATP-dependent Clp protease adaptor protein ClpS compare
PfGW456L13_717 -0.7 -1.8 hypothetical protein compare
PfGW456L13_2450 -0.7 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_3194 -0.7 -1.9 hypothetical protein compare
PfGW456L13_842 -0.7 -2.7 Tyrosine recombinase XerC compare
PfGW456L13_2924 -0.7 -3.0 Glutathione reductase (EC 1.8.1.7) compare
PfGW456L13_1300 -0.7 -2.5 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
PfGW456L13_1982 -0.7 -1.2 Carbon storage regulator compare
PfGW456L13_3398 -0.7 -1.6 Transcriptional regulator, TetR family compare
PfGW456L13_3448 -0.7 -2.4 Quinone oxidoreductase (EC 1.6.5.5) compare
PfGW456L13_4565 -0.7 -1.5 Beta-propeller domains of methanol dehydrogenase type compare
PfGW456L13_179 -0.7 -3.4 Putative esterase, FIGfam005057 compare
PfGW456L13_4507 -0.7 -1.6 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
PfGW456L13_2299 -0.6 -1.8 Two-component system response regulator QseB compare
PfGW456L13_3585 -0.6 -2.1 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) compare
PfGW456L13_236 -0.6 -1.9 Acyl carrier protein (ACP1) compare
PfGW456L13_2553 -0.6 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PfGW456L13_4013 -0.6 -2.2 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
PfGW456L13_2632 -0.6 -1.5 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
PfGW456L13_2224 -0.6 -3.6 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
PfGW456L13_630 -0.6 -2.0 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
PfGW456L13_812 -0.6 -1.9 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
PfGW456L13_756 -0.6 -2.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
PfGW456L13_4876 -0.6 -3.0 tRNA:Cm32/Um32 methyltransferase compare
PfGW456L13_605 -0.6 -1.0 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
PfGW456L13_3830 -0.6 -1.8 FIG00955248: hypothetical protein compare
PfGW456L13_2717 -0.6 -0.9 hypothetical protein compare
PfGW456L13_4090 -0.6 -2.1 FIG002060: uncharacterized protein YggL compare
PfGW456L13_2603 -0.6 -1.3 Transcriptional regulator, MarR family compare
PfGW456L13_4581 -0.6 -4.7 RND efflux system, inner membrane transporter CmeB compare
PfGW456L13_323 -0.6 -2.4 Histidine ABC transporter, permease protein (TC 3.A.1) compare
PfGW456L13_3005 -0.6 -1.9 FIG00960186: hypothetical protein compare
PfGW456L13_329 -0.6 -1.7 Histidine utilization repressor compare
PfGW456L13_3496 -0.6 -1.7 Transcriptional regulator, TetR family compare
PfGW456L13_4064 -0.6 -2.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
PfGW456L13_2695 -0.6 -1.1 hypothetical protein compare
PfGW456L13_4618 -0.6 -1.7 Outer membrane lipoprotein compare
PfGW456L13_2429 -0.6 -1.9 hypothetical protein compare
PfGW456L13_1108 -0.6 -1.8 hypothetical protein compare
PfGW456L13_2693 -0.6 -2.0 acetyltransferase, GNAT family compare
PfGW456L13_2821 -0.6 -1.9 DNA polymerase-like protein PA0670 compare
PfGW456L13_2496 -0.6 -0.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
PfGW456L13_3919 -0.6 -2.6 Probable transmembrane protein compare
PfGW456L13_5241 -0.6 -0.7 tRNA-Thr-CGT compare
PfGW456L13_4838 -0.6 -2.5 DNA recombination and repair protein RecO compare
PfGW456L13_3594 -0.6 -2.3 Putative transcriptional regulator LYSR-type compare
PfGW456L13_653 -0.6 -3.0 Trk system potassium uptake protein TrkA compare
PfGW456L13_2050 -0.6 -1.9 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein compare
PfGW456L13_1860 -0.6 -3.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens GW456-L13 in stress experiments

For stress Vancomycin Hydrochloride Hydrate across organisms