Experiment set3IT056 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Vancomycin Hydrochloride Hydrate 0.125 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
PfGW456L13_4031 +1.7 3.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
PfGW456L13_1204 +1.3 9.5 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
PfGW456L13_3315 +1.3 3.8 FIG00955242: hypothetical protein compare
PfGW456L13_1235 +1.2 8.2 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
PfGW456L13_3937 +1.2 4.5 DedD protein compare
PfGW456L13_5089 +1.2 2.3 Transcription termination protein NusA compare
PfGW456L13_1205 +1.2 7.0 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
PfGW456L13_2492 +1.1 1.8 Virulence factor mviM compare
PfGW456L13_4041 +1.1 2.6 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) compare
PfGW456L13_4040 +1.1 3.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
PfGW456L13_4645 +1.0 9.0 AmpG permease compare
PfGW456L13_118 +1.0 2.8 hypothetical protein compare
PfGW456L13_39 +1.0 3.0 Permeases of the major facilitator superfamily compare
PfGW456L13_3846 +1.0 2.4 Predicted secretion system X FIG084745: hypothetical protein compare
PfGW456L13_953 +1.0 7.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
PfGW456L13_2329 +1.0 3.4 Endoribonuclease L-PSP compare
PfGW456L13_2931 +0.9 2.1 transcriptional regulator MvaT, P16 subunit, putative compare
PfGW456L13_1967 +0.9 4.4 Arginine/ornithine ABC transporter, ATP-binding protein AotP compare
PfGW456L13_2818 +0.9 1.3 FIG028220: hypothetical protein co-occurring with HEAT repeat protein compare
PfGW456L13_1964 +0.9 8.1 Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein compare
PfGW456L13_43 +0.9 8.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
PfGW456L13_3442 +0.9 2.3 hypothetical protein compare
PfGW456L13_2953 +0.9 3.6 Probable transmembrane protein compare
PfGW456L13_872 +0.9 6.0 FIG139438: lipoprotein B compare
PfGW456L13_3964 +0.9 1.8 Asl2195 protein compare
PfGW456L13_5018 +0.9 4.4 Phosphocarrier protein, nitrogen regulation associated compare
PfGW456L13_3712 +0.8 2.3 hypothetical protein compare
PfGW456L13_1637 +0.8 4.5 Stringent starvation protein A compare
PfGW456L13_1966 +0.8 7.0 Arginine/ornithine ABC transporter, permease protein AotM compare
PfGW456L13_2023 +0.8 2.8 Flavoprotein WrbA compare
PfGW456L13_744 +0.8 2.4 hypothetical protein compare
PfGW456L13_1965 +0.8 5.6 Arginine/ornithine ABC transporter, permease protein AotQ compare
PfGW456L13_841 +0.8 3.4 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
PfGW456L13_4640 +0.8 2.4 FIG00955308: hypothetical protein compare
PfGW456L13_2946 +0.8 2.3 Aspartate aminotransferase (EC 2.6.1.1) compare
PfGW456L13_397 +0.8 5.0 Agmatine deiminase (EC 3.5.3.12) compare
PfGW456L13_887 +0.8 6.4 Glycerol-3-phosphate transporter compare
PfGW456L13_1311 +0.8 1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_2345 +0.8 2.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
PfGW456L13_3502 +0.8 2.2 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
PfGW456L13_3311 +0.8 1.1 hypothetical protein compare
PfGW456L13_2281 +0.8 2.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
PfGW456L13_3406 +0.7 1.3 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) compare
PfGW456L13_1131 +0.7 2.8 FIG00953361: hypothetical protein compare
PfGW456L13_946 +0.7 4.9 Outer membrane protein assembly factor YaeT precursor compare
PfGW456L13_2225 +0.7 2.1 FIG00958794: hypothetical protein compare
PfGW456L13_3799 +0.7 2.2 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) compare
PfGW456L13_254 +0.7 3.1 hypothetical protein compare
PfGW456L13_2557 +0.7 4.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) conserved
PfGW456L13_4035 +0.7 1.5 Cell division inhibitor-related protein compare
PfGW456L13_789 +0.7 3.2 hypothetical protein compare
PfGW456L13_272 +0.7 6.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_4610 +0.7 1.9 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
PfGW456L13_199 +0.7 3.8 alpha-1,3-rhamnosyltransferase compare
PfGW456L13_3012 +0.7 1.6 Fap amyloid fibril minor component compare
PfGW456L13_2170 +0.7 2.1 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
PfGW456L13_4513 +0.7 1.5 HtrA protease/chaperone protein compare
PfGW456L13_2191 +0.7 4.9 nucleotide sugar epimerase/dehydratase WbpM compare
PfGW456L13_4976 +0.7 2.9 putative membrane protein compare
PfGW456L13_1968 +0.7 5.0 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
PfGW456L13_2644 +0.7 2.8 Cold shock protein CspD compare
PfGW456L13_4338 +0.7 3.0 Flagellar biosynthesis protein FliQ compare
PfGW456L13_296 +0.7 2.2 Polyhydroxyalkanoate granule-associated protein PhaF compare
PfGW456L13_1970 +0.6 5.2 hypothetical protein compare
PfGW456L13_578 +0.6 4.9 Glutamate-aspartate carrier protein compare
PfGW456L13_2771 +0.6 3.0 Phage terminase, small subunit compare
PfGW456L13_1140 +0.6 1.0 Glycine cleavage system transcriptional antiactivator GcvR compare
PfGW456L13_3683 +0.6 1.2 FIG00957787: hypothetical protein compare
PfGW456L13_1179 +0.6 2.5 hypothetical protein compare
PfGW456L13_4402 +0.6 1.8 Segregation and condensation protein B compare
PfGW456L13_3763 +0.6 2.1 Methylamine dehydrogenase light chain precursor (EC 1.4.99.3) compare
PfGW456L13_4661 +0.6 2.6 Diacylglycerol kinase (EC 2.7.1.107) compare
PfGW456L13_2380 +0.6 2.6 Lactoylglutathione lyase (EC 4.4.1.5) compare
PfGW456L13_5096 +0.6 1.5 FIG004454: RNA binding protein compare
PfGW456L13_1017 +0.6 2.0 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
PfGW456L13_73 +0.6 0.9 FIG00955840: hypothetical protein compare
PfGW456L13_1526 +0.6 2.3 FIG00954153: hypothetical protein compare
PfGW456L13_365 +0.6 3.5 A/G-specific adenine glycosylase (EC 3.2.2.-) compare
PfGW456L13_844 +0.6 1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
PfGW456L13_1381 +0.6 3.2 FIG00955339: hypothetical protein compare
PfGW456L13_5023 +0.6 3.8 FagA protein compare
PfGW456L13_1705 +0.6 1.8 FIG00955494: hypothetical protein compare
PfGW456L13_2572 +0.6 1.7 Phosphonate uptake and metabolism regulator, LysR-family compare
PfGW456L13_4239 +0.6 0.8 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
PfGW456L13_4134 +0.6 1.1 hypothetical protein compare
PfGW456L13_2781 +0.6 2.1 Baseplate assembly protein W compare
PfGW456L13_3095 +0.6 2.5 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
PfGW456L13_4769 +0.6 1.5 hypothetical protein compare
PfGW456L13_267 +0.6 1.6 hypothetical protein compare
PfGW456L13_2271 +0.6 1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_4960 +0.6 1.6 Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) compare
PfGW456L13_3953 +0.6 2.8 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein compare
PfGW456L13_4633 +0.6 2.1 Isochorismatase (EC 3.3.2.1) compare
PfGW456L13_2012 +0.6 3.7 Sensor protein PhoQ (EC 2.7.13.3) compare
PfGW456L13_1615 +0.6 1.1 Probable transmembrane protein compare
PfGW456L13_1971 +0.6 3.9 Succinylornithine transaminase (EC 2.6.1.81) compare
PfGW456L13_3326 +0.6 1.4 FIG00953934: hypothetical protein compare
PfGW456L13_264 +0.6 2.2 General secretion pathway protein F compare
PfGW456L13_4679 +0.6 1.6 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
PfGW456L13_2330 +0.5 1.4 Demethylmenaquinone methyltransferase compare
PfGW456L13_2505 +0.5 2.1 Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol compare
PfGW456L13_2696 +0.5 2.7 Chromosome segregation ATPases compare
PfGW456L13_1524 +0.5 2.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
PfGW456L13_2665 +0.5 2.2 hypothetical protein compare
PfGW456L13_1322 +0.5 1.4 Permeases of the major facilitator superfamily compare
PfGW456L13_1447 +0.5 1.0 Transcriptional regulator, GntR family compare
PfGW456L13_1625 +0.5 1.0 FIG00958649: hypothetical protein compare
PfGW456L13_4986 +0.5 2.4 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
PfGW456L13_906 +0.5 2.5 Putative activity regulator of membrane protease YbbK compare
PfGW456L13_2283 +0.5 1.5 Inhibitor of the KinA pathway to sporulation, predicted exonuclease compare
PfGW456L13_2663 +0.5 3.2 Membrane protein, putative compare
PfGW456L13_1714 +0.5 1.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
PfGW456L13_2854 +0.5 1.8 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
PfGW456L13_743 +0.5 2.9 Transcriptional regulator compare
PfGW456L13_4585 +0.5 1.1 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
PfGW456L13_2352 +0.5 1.5 N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87) compare
PfGW456L13_4605 +0.5 3.0 FIG00955830: hypothetical protein compare
PfGW456L13_13 +0.5 2.6 Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3) compare
PfGW456L13_3550 +0.5 2.0 peptidyl-prolyl cis-trans isomerase, FkbP-type compare
PfGW456L13_3667 +0.5 0.9 hypothetical protein compare
PfGW456L13_952 +0.5 2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
PfGW456L13_4015 +0.5 1.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
PfGW456L13_2620 +0.5 1.0 Glutamine amidotransferase class-I (EC 6.3.5.2) compare
PfGW456L13_5054 +0.5 3.6 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) compare
PfGW456L13_2569 +0.5 2.4 cytochrome b(561) compare
PfGW456L13_2845 +0.5 0.8 FIG00953703: hypothetical protein compare
PfGW456L13_4720 +0.5 3.6 probable glucosyl transferase compare
PfGW456L13_3289 +0.5 1.4 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
PfGW456L13_68 +0.5 1.0 hypothetical protein compare
PfGW456L13_3387 +0.5 2.4 Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) compare
PfGW456L13_3195 +0.5 2.0 hypothetical protein compare
PfGW456L13_885 +0.5 2.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
PfGW456L13_2984 +0.5 0.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
PfGW456L13_766 +0.5 1.0 hypothetical protein compare
PfGW456L13_2371 +0.5 1.8 hypothetical protein compare
PfGW456L13_3008 +0.5 2.5 Fap system putative outer membrane protein compare
PfGW456L13_4933 +0.5 2.3 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
PfGW456L13_403 +0.5 1.6 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
PfGW456L13_427 +0.5 1.2 Two-component system response regulator OmpR compare
PfGW456L13_4925 +0.5 1.9 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
PfGW456L13_1288 +0.5 2.2 Isochorismatase (EC 3.3.2.1) compare
PfGW456L13_4900 +0.5 1.0 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain compare
PfGW456L13_202 +0.5 1.9 Probable transcription regulator Mig-14 compare
PfGW456L13_2935 +0.5 2.6 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) compare
PfGW456L13_2447 +0.4 1.8 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
PfGW456L13_3994 +0.4 3.3 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
PfGW456L13_1441 +0.4 1.2 Large-conductance mechanosensitive channel compare
PfGW456L13_2534 +0.4 2.0 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
PfGW456L13_668 +0.4 0.6 Ribonuclease P protein component (EC 3.1.26.5) compare
PfGW456L13_2524 +0.4 1.6 Short-chain dehydrogenase/reductase SDR compare
PfGW456L13_4194 +0.4 1.5 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
PfGW456L13_498 +0.4 0.8 hypothetical protein compare
PfGW456L13_2265 +0.4 1.9 Probable transmembrane protein compare
PfGW456L13_3270 +0.4 2.0 PhnB protein compare
PfGW456L13_767 +0.4 2.6 Rubredoxin compare
PfGW456L13_1482 +0.4 1.8 type 4 fimbrial biogenesis protein FimU compare
PfGW456L13_2868 +0.4 0.9 hypothetical protein compare
PfGW456L13_2720 +0.4 1.7 FIG01074225: hypothetical protein compare
PfGW456L13_1501 +0.4 1.7 Benzoate transport protein compare
PfGW456L13_863 +0.4 2.7 Twin-arginine translocation protein TatB compare
PfGW456L13_2048 +0.4 2.3 Phosphohistidine phosphatase SixA compare
PfGW456L13_392 +0.4 2.3 FIG00459469: hypothetical protein compare
PfGW456L13_3105 +0.4 1.0 hypothetical protein compare
PfGW456L13_2353 +0.4 1.8 hypothetical protein compare
PfGW456L13_2955 +0.4 0.8 RND efflux system, membrane fusion protein CmeA compare
PfGW456L13_2249 +0.4 2.4 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
PfGW456L13_2608 +0.4 0.5 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
PfGW456L13_446 +0.4 2.2 Cystine ABC transporter, ATP-binding protein compare
PfGW456L13_1886 +0.4 1.4 FIG006045: Sigma factor, ECF subfamily compare
PfGW456L13_3788 +0.4 1.5 PUTATIVE METHYLTRANSFERASE compare
PfGW456L13_1098 +0.4 1.5 FIG00953108: hypothetical protein compare
PfGW456L13_3657 +0.4 2.2 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
PfGW456L13_908 +0.4 3.2 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
PfGW456L13_4051 +0.4 0.8 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
PfGW456L13_2638 +0.4 1.3 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
PfGW456L13_2752 +0.4 2.0 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) compare
PfGW456L13_2118 +0.4 2.0 L-arabinolactonase (EC 3.1.1.15) (from data) compare
PfGW456L13_2882 +0.4 1.6 FIG00957011: hypothetical protein compare
PfGW456L13_62 +0.4 0.7 hypothetical protein compare
PfGW456L13_3749 +0.4 1.5 Nitrogen regulation protein NR(I) compare
PfGW456L13_3636 +0.4 1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
PfGW456L13_4913 +0.4 2.4 DipZ protein compare
PfGW456L13_1115 +0.4 2.9 Membrane protein, putative compare
PfGW456L13_2735 +0.4 1.8 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) compare
PfGW456L13_2441 +0.4 0.9 Antisigma transmembrane sensor FpvR compare
PfGW456L13_3278 +0.4 2.0 BatD compare
PfGW456L13_4244 +0.4 2.0 FIG00961250: hypothetical protein compare
PfGW456L13_1533 +0.4 2.3 FIG00954216: hypothetical protein compare
PfGW456L13_4924 +0.4 3.1 Lysine 2,3-aminomutase (EC 5.4.3.2) compare
PfGW456L13_5029 +0.4 3.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
PfGW456L13_869 +0.4 2.0 probable P23 protein compare
PfGW456L13_2321 +0.4 1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_770 +0.4 1.2 Superfamily II DNA and RNA helicases compare
PfGW456L13_4480 +0.4 2.1 Cyn operon transcriptional activator compare
PfGW456L13_3434 +0.4 1.9 Permease of the drug/metabolite transporter (DMT) superfamily compare
PfGW456L13_1669 +0.4 2.0 Na+-dependent transporters of the SNF family compare
PfGW456L13_1349 +0.4 1.1 MaoC-like domain protein compare
PfGW456L13_4007 +0.4 1.4 Phosphomannomutase (EC 5.4.2.8) compare
PfGW456L13_4236 +0.4 0.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
PfGW456L13_3640 +0.4 2.0 Uricase (urate oxidase) (EC 1.7.3.3) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens GW456-L13 in stress experiments

For stress Vancomycin Hydrochloride Hydrate across organisms