Experiment set3IT052 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Fusidic acid sodium salt 0.03 mg/ml

200 most important genes:

  gene name fitness t score description  
PfGW456L13_4581 -3.7 -17.3 RND efflux system, inner membrane transporter CmeB compare
PfGW456L13_4580 -3.6 -9.0 Multidrug efflux RND membrane fusion protein MexC compare
PfGW456L13_1735 -3.3 -4.4 Glycerol uptake facilitator protein compare
PfGW456L13_275 -3.3 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_773 -3.2 -9.6 Hydrogen peroxide-inducible genes activator compare
PfGW456L13_4582 -3.2 -7.0 RND efflux system, outer membrane lipoprotein CmeC compare
PfGW456L13_1363 -3.2 -7.0 Rare lipoprotein A precursor compare
PfGW456L13_5086 -3.1 -4.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
PfGW456L13_5150 -3.1 -3.6 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_1845 -2.9 -4.3 Cold shock protein CspC compare
PfGW456L13_4859 -2.6 -5.2 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_4842 -2.4 -3.2 Translation elongation factor LepA compare
PfGW456L13_4836 -2.3 -10.2 Transglycosylase, Slt family compare
PfGW456L13_656 -2.3 -3.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_1972 -2.3 -2.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
PfGW456L13_1580 -2.3 -9.2 FIG140336: TPR domain protein compare
PfGW456L13_4668 -2.2 -5.9 RecA protein compare
PfGW456L13_4467 -2.2 -11.4 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
PfGW456L13_854 -2.1 -3.7 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_355 -2.0 -5.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
PfGW456L13_1233 -1.9 -3.2 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_5006 -1.9 -2.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_5112 -1.8 -2.3 tmRNA-binding protein SmpB compare
PfGW456L13_1236 -1.8 -9.7 Cell wall endopeptidase, family M23/M37 compare
PfGW456L13_2551 -1.8 -4.1 Cell division trigger factor (EC 5.2.1.8) compare
PfGW456L13_4012 -1.7 -2.4 VacJ-like lipoprotein precursor compare
PfGW456L13_990 -1.7 -3.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
PfGW456L13_5060 -1.7 -4.7 Peptide chain release factor 3 compare
PfGW456L13_1655 -1.6 -2.4 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
PfGW456L13_5008 -1.6 -2.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_4165 -1.5 -2.9 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_772 -1.5 -6.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
PfGW456L13_793 -1.5 -2.6 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_2956 -1.5 -5.6 Transcriptional regulatory protein RstA compare
PfGW456L13_2623 -1.4 -2.2 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
PfGW456L13_2299 -1.4 -4.1 Two-component system response regulator QseB compare
PfGW456L13_3305 -1.4 -3.2 BatD compare
PfGW456L13_5005 -1.4 -4.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
PfGW456L13_1574 -1.4 -3.3 GTP-binding and nucleic acid-binding protein YchF compare
PfGW456L13_4038 -1.4 -2.2 DNA topoisomerase I (EC 5.99.1.2) compare
PfGW456L13_3302 -1.3 -1.8 FIG00954674: hypothetical protein compare
PfGW456L13_2768 -1.3 -2.8 FIG00959468: hypothetical protein compare
PfGW456L13_913 -1.3 -5.3 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_4487 -1.3 -2.5 FIG00954793: hypothetical protein compare
PfGW456L13_1838 -1.3 -3.5 Sensory box histidine kinase compare
PfGW456L13_845 -1.3 -5.6 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_1368 -1.3 -3.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_3300 -1.2 -7.0 MoxR-like ATPase in aerotolerance operon compare
PfGW456L13_4507 -1.2 -1.8 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
PfGW456L13_1865 -1.2 -1.9 Cold shock protein CspA compare
PfGW456L13_4254 -1.1 -5.0 FIG00955360: hypothetical protein compare
PfGW456L13_2150 -1.1 -2.7 Carbon storage regulator compare
PfGW456L13_2957 -1.1 -3.6 Sensory histidine kinase QseC compare
PfGW456L13_1192 -1.1 -2.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
PfGW456L13_3301 -1.1 -3.4 hypothetical protein PA3071 compare
PfGW456L13_858 -1.0 -3.2 Uroporphyrinogen-III synthase (EC 4.2.1.75) compare
PfGW456L13_3304 -1.0 -5.4 TPR domain protein in aerotolerance operon compare
PfGW456L13_4207 -1.0 -4.3 Periplasmic protease compare
PfGW456L13_717 -1.0 -2.5 hypothetical protein compare
PfGW456L13_4511 -1.0 -1.5 Rhodanese-like domain protein compare
PfGW456L13_3875 -1.0 -2.8 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
PfGW456L13_2496 -1.0 -1.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
PfGW456L13_2947 -1.0 -4.0 Aspartate aminotransferase (EC 2.6.1.1) compare
PfGW456L13_3309 -1.0 -1.6 Glutathione S-transferase family protein compare
PfGW456L13_5121 -0.9 -1.1 hypothetical protein compare
PfGW456L13_1009 -0.9 -1.8 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
PfGW456L13_144 -0.9 -3.5 3'-to-5' exoribonuclease RNase R compare
PfGW456L13_804 -0.9 -1.7 hypothetical protein compare
PfGW456L13_2107 -0.9 -2.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
PfGW456L13_2084 -0.9 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PfGW456L13_3810 -0.9 -1.5 hypothetical protein compare
PfGW456L13_430 -0.9 -4.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
PfGW456L13_4365 -0.9 -2.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
PfGW456L13_4451 -0.9 -3.7 ATP-dependent RNA helicase SrmB compare
PfGW456L13_4665 -0.9 -1.6 FIG00957354: hypothetical protein compare
PfGW456L13_274 -0.9 -5.6 DamX, an inner membrane protein involved in bile resistance compare
PfGW456L13_795 -0.9 -1.6 hypothetical protein compare
PfGW456L13_140 -0.9 -2.5 FIG003573: hypothetical protein compare
PfGW456L13_3303 -0.8 -4.3 BatA (Bacteroides aerotolerance operon) compare
PfGW456L13_5067 -0.8 -5.4 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
PfGW456L13_2996 -0.8 -3.0 Nuclease inhibitor compare
PfGW456L13_2552 -0.8 -3.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_3709 -0.8 -2.1 Cation efflux system protein CusF precursor compare
PfGW456L13_59 -0.8 -3.4 Sensor histidine kinase/response regulator compare
PfGW456L13_4042 -0.8 -1.9 FIG00953628: hypothetical protein compare
PfGW456L13_1749 -0.8 -2.4 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_3372 -0.8 -1.9 hypothetical protein compare
PfGW456L13_2941 -0.8 -1.7 Glycerate kinase (EC 2.7.1.31) compare
PfGW456L13_4882 -0.8 -1.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
PfGW456L13_2632 -0.8 -1.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
PfGW456L13_3321 -0.8 -2.5 Transcriptional regulator of the arabinose operon in Shewanella, GntR family compare
PfGW456L13_1528 -0.8 -1.7 C4-type zinc finger protein, DksA/TraR family compare
PfGW456L13_1721 -0.8 -3.9 Tyrosine recombinase XerD compare
PfGW456L13_582 -0.8 -2.0 probable exported protein YPO0432 compare
PfGW456L13_758 -0.8 -2.0 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
PfGW456L13_1603 -0.8 -1.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
PfGW456L13_139 -0.8 -1.2 LSU ribosomal protein L9p compare
PfGW456L13_5074 -0.8 -1.3 1-phosphofructokinase (EC 2.7.1.56) compare
PfGW456L13_420 -0.8 -1.2 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
PfGW456L13_1523 -0.7 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
PfGW456L13_2797 -0.7 -2.6 hypothetical protein compare
PfGW456L13_2582 -0.7 -1.5 RNA polymerase sigma-54 factor RpoN compare
PfGW456L13_875 -0.7 -3.5 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_1362 -0.7 -3.5 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
PfGW456L13_3577 -0.7 -1.6 hypothetical protein compare
PfGW456L13_3232 -0.7 -1.1 hypothetical protein compare
PfGW456L13_3051 -0.7 -2.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
PfGW456L13_1848 -0.7 -1.3 hypothetical protein compare
PfGW456L13_1020 -0.7 -4.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
PfGW456L13_2297 -0.7 -2.2 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
PfGW456L13_1370 -0.7 -2.0 FIG00957593: hypothetical protein compare
PfGW456L13_2547 -0.7 -1.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_2487 -0.7 -1.7 FIG00961567: hypothetical protein compare
PfGW456L13_1545 -0.7 -3.1 Paraquat-inducible protein A compare
PfGW456L13_3979 -0.7 -2.3 hypothetical protein compare
PfGW456L13_100 -0.7 -3.0 Transcriptional regulator, AraC family compare
PfGW456L13_2239 -0.7 -1.8 hypothetical protein compare
PfGW456L13_151 -0.7 -1.8 HflC protein compare
PfGW456L13_4493 -0.7 -2.2 Nitroreductase family protein compare
PfGW456L13_1975 -0.7 -1.8 Succinylarginine dihydrolase (EC 3.5.3.23) compare
PfGW456L13_1409 -0.7 -3.9 ATP-dependent RNA helicase PA3950 compare
PfGW456L13_157 -0.7 -1.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
PfGW456L13_1160 -0.6 -2.6 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
PfGW456L13_2190 -0.6 -2.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
PfGW456L13_5037 -0.6 -2.5 Rare lipoprotein A compare
PfGW456L13_303 -0.6 -1.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PfGW456L13_4907 -0.6 -1.6 hypothetical protein compare
PfGW456L13_4518 -0.6 -1.6 FIG00955375: hypothetical protein compare
PfGW456L13_922 -0.6 -1.8 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
PfGW456L13_1889 -0.6 -1.6 Phosphogluconate dehydratase (EC 4.2.1.12) compare
PfGW456L13_1784 -0.6 -1.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_3354 -0.6 -1.3 hypothetical protein compare
PfGW456L13_2813 -0.6 -1.4 Adenylylsulfate reductase beta-subunit (EC 1.8.99.2) compare
PfGW456L13_4639 -0.6 -1.7 Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) compare
PfGW456L13_1824 -0.6 -1.3 transcriptional regulator MvaT, P16 subunit compare
PfGW456L13_346 -0.6 -2.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
PfGW456L13_3179 -0.6 -1.8 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_1973 -0.6 -2.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
PfGW456L13_3341 -0.6 -3.3 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
PfGW456L13_4125 -0.6 -1.5 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
PfGW456L13_514 -0.6 -1.7 Adenylylsulfate kinase (EC 2.7.1.25) compare
PfGW456L13_2271 -0.6 -1.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_2856 -0.6 -1.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
PfGW456L13_2385 -0.6 -1.2 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
PfGW456L13_3565 -0.6 -1.1 heme uptake regulator compare
PfGW456L13_4424 -0.6 -1.9 FIG00953416: hypothetical protein compare
PfGW456L13_3834 -0.6 -3.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
PfGW456L13_3052 -0.6 -1.3 Response regulator compare
PfGW456L13_1108 -0.6 -1.7 hypothetical protein compare
PfGW456L13_839 -0.6 -2.5 FIG004064: hypothetical protein compare
PfGW456L13_150 -0.6 -1.1 hypothetical protein compare
PfGW456L13_3020 -0.6 -2.4 FMN-dependent NADH-azoreductase compare
PfGW456L13_3961 -0.6 -1.3 FIG00958186: hypothetical protein compare
PfGW456L13_2651 -0.6 -2.0 Cell division protein FtsK compare
PfGW456L13_4884 -0.6 -1.3 hypothetical protein compare
PfGW456L13_1769 -0.6 -1.9 SAM-dependent methyltransferases compare
PfGW456L13_2648 -0.6 -3.0 Arginine-tRNA-protein transferase (EC 2.3.2.8) compare
PfGW456L13_2450 -0.6 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_152 -0.6 -2.0 HflK protein compare
PfGW456L13_2436 -0.6 -2.0 Phenylacetic acid degradation operon negative regulatory protein PaaX compare
PfGW456L13_4662 -0.6 -1.0 Transcriptional regulator, LuxR family compare
PfGW456L13_2573 -0.6 -2.0 transcriptional regulator, MerR family compare
PfGW456L13_2526 -0.6 -0.7 4-hydroxyphenylacetate 3-monooxygenase, reductase component (EC 1.6.8.-) compare
PfGW456L13_653 -0.5 -2.8 Trk system potassium uptake protein TrkA compare
PfGW456L13_4035 -0.5 -1.0 Cell division inhibitor-related protein compare
PfGW456L13_2581 -0.5 -1.7 Transmembrane regulator protein PrtR compare
PfGW456L13_4961 -0.5 -2.8 Fumarylacetoacetase (EC 3.7.1.2) compare
PfGW456L13_873 -0.5 -3.2 Porphobilinogen synthase (EC 4.2.1.24) compare
PfGW456L13_558 -0.5 -1.8 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) compare
PfGW456L13_454 -0.5 -1.6 Methionine ABC transporter permease protein compare
PfGW456L13_1852 -0.5 -2.4 Holliday junction DNA helicase RuvA compare
PfGW456L13_2268 -0.5 -1.3 Thiol-disulfide isomerase and thioredoxins compare
PfGW456L13_2176 -0.5 -3.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_565 -0.5 -2.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
PfGW456L13_4358 -0.5 -2.7 FIG00953167: hypothetical protein compare
PfGW456L13_4413 -0.5 -3.3 Potassium uptake protein TrkH compare
PfGW456L13_2620 -0.5 -0.9 Glutamine amidotransferase class-I (EC 6.3.5.2) compare
PfGW456L13_3276 -0.5 -2.3 BatA (Bacteroides aerotolerance operon) compare
PfGW456L13_3964 -0.5 -0.7 Asl2195 protein compare
PfGW456L13_3257 -0.5 -1.6 Mg(2+) transport ATPase protein C compare
PfGW456L13_2553 -0.5 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PfGW456L13_4512 -0.5 -2.7 Exported zinc metalloprotease YfgC precursor compare
PfGW456L13_2808 -0.5 -2.5 Transcriptional regulator, AraC family compare
PfGW456L13_5011 -0.5 -1.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
PfGW456L13_1861 -0.5 -1.4 Queuosine Biosynthesis QueE Radical SAM compare
PfGW456L13_1281 -0.5 -3.7 Catalase (EC 1.11.1.6) compare
PfGW456L13_1634 -0.5 -2.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
PfGW456L13_2804 -0.5 -0.7 Cytochrome c5 compare
PfGW456L13_1690 -0.5 -1.2 Molybdenum cofactor biosynthesis protein MoaD compare
PfGW456L13_3661 -0.5 -2.2 probable acetyltransferase compare
PfGW456L13_3327 -0.5 -1.2 FIG00954117: hypothetical protein compare
PfGW456L13_1612 -0.5 -1.1 FIG00956396: hypothetical protein compare
PfGW456L13_5025 -0.5 -2.3 FIG138315: Putative alpha helix protein compare
PfGW456L13_1773 -0.5 -2.1 putative exported protein compare
PfGW456L13_3545 -0.5 -2.0 Transcriptional regulator, ArsR family compare
PfGW456L13_1853 -0.5 -1.6 Holliday junction DNA helicase RuvB compare
PfGW456L13_4495 -0.5 -1.4 Protein YcgL compare
PfGW456L13_4744 -0.5 -2.1 Putative lipoprotein in cluster with COG2110 compare
PfGW456L13_2285 -0.5 -2.0 Isohexenylglutaconyl-CoA hydratase compare
PfGW456L13_1691 -0.5 -1.2 Molybdenum cofactor biosynthesis protein MoaE compare


Specific Phenotypes

For 1 genes in this experiment

For stress Fusidic acid sodium salt in Pseudomonas fluorescens GW456-L13

For stress Fusidic acid sodium salt across organisms