Experiment set3IT052 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with S16_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF4733 -2.5 -1.0 Type III secretion transcriptional regulator HilC (= SirC) compare
GFF1863 -2.4 -1.4 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF360 -1.8 -1.5 hypothetical protein compare
GFF4208 -1.7 -1.3 FIG01046757: hypothetical protein compare
GFF2700 -1.6 -1.0 FIG01045186: hypothetical protein compare
GFF3506 -1.6 -1.6 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF4055 -1.5 -2.8 Uncharacterized protein ImpB compare
GFF2430 -1.5 -1.4 Ferredoxin, 2Fe-2S compare
GFF2475 -1.5 -1.6 Ribonuclease III (EC 3.1.26.3) compare
GFF3071 -1.4 -1.9 hypothetical protein compare
GFF1815 -1.4 -2.1 Electron transport complex protein RnfA compare
GFF824 -1.4 -2.2 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF3874 -1.4 -2.1 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) compare
GFF1591 -1.3 -2.4 Transcription repressor of tripartite multidrug resistance system compare
GFF3667 -1.3 -1.3 Cytidylate kinase (EC 2.7.4.25) compare
GFF3938 -1.3 -1.4 Ethanolamine utilization protein similar to PduL compare
GFF133 -1.2 -3.7 Type IV fimbrial assembly protein PilC compare
GFF992 -1.2 -1.9 hypothetical protein compare
GFF1221 -1.2 -1.3 hypothetical protein compare
GFF2492 -1.2 -1.7 Putative transport protein compare
GFF3502 -1.2 -0.8 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF1808 -1.2 -2.6 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF2173 -1.2 -3.0 Chromosomal replication initiator protein DnaA compare
GFF4160 -1.2 -2.6 UPF0125 protein yfjF compare
GFF218 -1.1 -2.2 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF3601 -1.1 -1.5 Type III secretion protein SsaK compare
GFF4631 -1.1 -1.7 hypothetical protein compare
GFF2703 -1.1 -1.1 Translation initiation factor SUI1-related protein compare
GFF968 -1.1 -1.4 hypothetical protein compare
GFF652 -1.1 -4.6 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF3569 -1.1 -1.3 Proline iminopeptidase (EC 3.4.11.5) compare
GFF1554 -1.0 -2.1 Putative transcriptional regulator compare
GFF2881 -1.0 -4.2 WzxE protein compare
GFF1076 -1.0 -1.6 Aerobic respiration control protein arcA compare
GFF2119 -1.0 -1.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF255 -1.0 -1.6 hypothetical protein compare
GFF3196 -1.0 -1.0 Inner membrane protein YqjE compare
GFF4784 -1.0 -1.5 Transcriptional regulator, MarR family compare
GFF191 -1.0 -1.3 ApaG protein compare
GFF3566 -1.0 -1.5 major outer membrane lipoprotein compare
GFF2669 -1.0 -1.9 Putative outer membrane lipoprotein compare
GFF2493 -1.0 -1.7 FIG01047459: hypothetical protein compare
GFF1356 -1.0 -1.4 Acetate operon repressor compare
GFF2031 -1.0 -1.0 FIG01046611: hypothetical protein compare
GFF2418 -0.9 -2.3 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) compare
GFF4462 -0.9 -1.8 Bactoprenol-linked glucose translocase compare
GFF3960 -0.9 -4.2 Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) compare
GFF4601 -0.9 -3.5 Phosphoglucomutase (EC 5.4.2.2) compare
GFF4465 -0.9 -1.2 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA compare
GFF4790 -0.9 -2.4 FIG01047833: hypothetical protein compare
GFF1874 -0.9 -0.6 hypothetical protein compare
GFF3576 -0.9 -1.5 Tetrathionate reductase two-component response regulator compare
GFF1038 -0.9 -2.2 FIG01200701: possible membrane protein compare
GFF1088 -0.9 -0.6 FIG01045785: hypothetical protein compare
GFF146 -0.9 -1.4 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
GFF1650 -0.9 -1.4 FIG01046209: inner membrane protein compare
GFF1884 -0.9 -1.0 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF1736 -0.9 -0.5 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
GFF1747 -0.9 -0.9 putative inner membrane protein compare
GFF633 -0.9 -2.7 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF873 -0.9 -0.8 hypothetical protein compare
GFF4243 -0.9 -0.6 Probable secreted protein compare
GFF34 -0.9 -1.3 FIG01280259: hypothetical protein compare
GFF3888 -0.9 -1.8 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF4436 -0.9 -2.7 FIG074102: hypothetical protein compare
GFF4770 -0.9 -0.9 transposase compare
GFF4270 -0.9 -0.5 FIG00637869: hypothetical protein compare
GFF180 -0.9 -0.5 FIG01045455: hypothetical protein compare
GFF4473 -0.9 -1.0 FIG01046818: hypothetical protein compare
GFF2655 -0.8 -1.2 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
GFF4526 -0.8 -1.5 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF415 -0.8 -2.6 FIG074102: hypothetical protein compare
GFF87 -0.8 -1.2 C4-type zinc finger protein, DksA/TraR family compare
GFF4702 -0.8 -1.4 Arabinose 5-phosphate isomerase (EC 5.3.1.13) compare
GFF388 -0.8 -3.2 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF4798 -0.8 -2.4 Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF4387 -0.8 -1.0 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF20 -0.8 -2.9 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF4335 -0.8 -1.5 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
GFF2922 -0.8 -1.4 Transcription elongation factor GreA compare
GFF3315 -0.8 -0.8 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD compare
GFF3409 -0.8 -1.3 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
GFF1532 -0.8 -2.7 Transcriptional repressor of aga operon compare
GFF1396 -0.8 -5.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF801 -0.8 -0.9 FIG01047026: hypothetical protein compare
GFF2573 -0.8 -1.0 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF3621 -0.8 -1.6 Glutaredoxin-related protein compare
GFF3709 -0.8 -1.3 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF3886 -0.8 -3.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF789 -0.8 -3.7 DNA primase (EC 2.7.7.-), phage-associated compare
GFF1094 -0.8 -2.0 FIG01045823: hypothetical protein compare
GFF657 -0.8 -2.7 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
GFF2973 -0.8 -3.0 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF2864 -0.8 -0.8 Mobile element protein compare
GFF3828 -0.8 -0.7 Uncharacterized fimbrial chaperone YehC precursor compare
GFF1224 -0.8 -3.3 putative cytoplasmic protein compare
GFF3513 -0.8 -2.2 Putative membrane protein compare
GFF597 -0.8 -1.4 DNA-damage-inducible protein J compare
GFF1119 -0.8 -2.4 Na+/H+ antiporter NhaA type compare
GFF3347 -0.7 -2.8 Protein of unknown function YceH compare
GFF1651 -0.7 -2.4 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
GFF2431 -0.7 -1.7 Chaperone protein HscA compare
GFF387 -0.7 -1.5 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF4350 -0.7 -0.4 hypothetical protein compare
GFF4656 -0.7 -2.8 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
GFF4634 -0.7 -2.4 Citrate synthase (si) (EC 2.3.3.1) compare
GFF1834 -0.7 -3.7 Putative dehydratase protein STM2273 compare
GFF2269 -0.7 -1.0 hypothetical protein compare
GFF1414 -0.7 -0.9 hypothetical protein compare
GFF748 -0.7 -1.7 Protein ybjI compare
GFF428 -0.7 -1.3 3-keto-L-gulonate 6-phosphate decarboxylase homolog compare
GFF794 -0.7 -0.9 Phage holin compare
GFF706 -0.7 -2.1 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
GFF1806 -0.7 -1.8 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF2178 -0.7 -1.0 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
GFF1571 -0.7 -0.4 FIG00638334: hypothetical protein compare
GFF4598 -0.7 -1.2 Uncharacterized protein ybfE compare
GFF3341 -0.7 -0.9 DNA-damage-inducible protein I compare
GFF341 -0.7 -0.5 RmbA compare
GFF3558 -0.7 -1.0 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF4408 -0.7 -2.8 YbbL ABC transporter ATP-binding protein compare
GFF4252 -0.7 -5.2 Type III restriction-modification system methylation subunit (EC 2.1.1.72) compare
GFF236 -0.7 -0.6 FIG00545237: hypothetical protein compare
GFF2481 -0.7 -1.4 hypothetical protein compare
GFF4275 -0.7 -3.1 Putative inner membrane protein compare
GFF189 -0.7 -2.6 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF3996 -0.7 -2.4 DNA-cytosine methyltransferase (EC 2.1.1.37) compare
GFF945 -0.7 -1.1 Aspartate N-acetyltransferase (EC 2.3.1.17) compare
GFF2991 -0.7 -1.1 Tyrosine recombinase XerD compare
GFF3814 -0.7 -1.7 Osmoprotectant ABC transporter binding protein YehZ compare
GFF1646 -0.7 -1.6 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) compare
GFF777 -0.7 -1.1 COG0419: ATPase involved in DNA repair compare
GFF587 -0.6 -2.4 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF1810 -0.6 -1.4 FIG01046382: hypothetical protein compare
GFF3496 -0.6 -2.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
GFF2845 -0.6 -1.9 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF1065 -0.6 -2.8 Conserved uncharacterized protein CreA compare
GFF2413 -0.6 -0.9 FIG021952: putative membrane protein compare
GFF1163 -0.6 -1.5 IncF plasmid conjugative transfer protein TraR compare
GFF3822 -0.6 -1.8 FIG00545237: hypothetical protein compare
GFF1697 -0.6 -1.0 FIG00634007: hypothetical protein compare
GFF515 -0.6 -2.9 Protein involved in catabolism of external DNA compare
GFF1665 -0.6 -2.4 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
GFF1239 -0.6 -0.8 Gifsy-2 prophage lysozyme( EC:3.2.1.17 ) compare
GFF754 -0.6 -2.0 YbjC protein, clustered with oxygen-insensitive NADPH nitroreductase compare
GFF156 -0.6 -0.6 rRNA small subunit methyltransferase H compare
GFF4360 -0.6 -1.8 Queuosine Biosynthesis QueC ATPase compare
GFF1612 -0.6 -0.9 FIG01046582: hypothetical protein compare
GFF1966 -0.6 -1.5 FIG00638164: hypothetical protein compare
GFF1985 -0.6 -1.1 tRNA-Ala-GGC compare
GFF3743 -0.6 -1.1 FIG01046717: hypothetical protein compare
GFF4650 -0.6 -1.1 4-hydroxybenzoyl-CoA thioesterase family active site compare
GFF3881 -0.6 -1.2 Colanic acid biosynthsis UDP-glucose lipid carrier transferase WcaJ compare
GFF1587 -0.6 -2.8 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) compare
GFF2110 -0.6 -1.9 Sigma factor RpoE regulatory protein RseC compare
GFF3733 -0.6 -1.4 Phage tail fiber protein compare
GFF4611 -0.6 -1.6 FIG01200701: possible membrane protein compare
GFF1758 -0.6 -2.1 Putative LysR family transcriptional regulator compare
GFF669 -0.6 -2.3 UPF0098 protein ybhB compare
GFF1174 -0.6 -1.9 FIG00642834: hypothetical protein compare
GFF4698 -0.6 -1.3 PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69) compare
GFF4167 -0.6 -1.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3850 -0.6 -0.8 Response regulator BaeR compare
GFF1856 -0.6 -2.5 Pyrimidine deoxynucleoside triphosphate (dYTP) pyrophosphohydrolase YfoO compare
GFF3054 -0.6 -2.9 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
GFF3369 -0.6 -1.4 FIG146278: Maf/YceF/YhdE family protein compare
GFF3162 -0.6 -0.4 glycogen synthesis protein GlgS compare
GFF2966 -0.6 -1.2 Transcriptional regulator NanR compare
GFF3258 -0.6 -2.1 LSU m5C1962 methyltransferase RlmI compare
GFF3495 -0.6 -1.5 Succinylarginine dihydrolase (EC 3.5.3.23) compare
GFF1087 -0.6 -1.0 FIG00638537: hypothetical protein compare
GFF1663 -0.6 -1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
GFF2667 -0.6 -0.4 Right origin-binding protein compare
GFF1289 -0.6 -2.3 Phage tail assembly compare
GFF3603 -0.6 -0.6 Secretion system apparatus protein SsaM compare
GFF3574 -0.6 -1.9 Tetrathionate reductase subunit B compare
GFF3149 -0.6 -3.7 Type I secretion outer membrane protein, TolC precursor compare
GFF3322 -0.6 -1.5 Major curlin subunit precursor CsgA compare
GFF2094 -0.6 -0.7 Putative outer membrane lipoprotein compare
GFF1157 -0.6 -2.6 IncF plasmid conjugative transfer pilus assembly protein TraE compare
GFF2049 -0.6 -0.4 FIG01045978: hypothetical protein compare
GFF4385 -0.6 -1.4 Primosomal replication protein N prime prime compare
GFF2880 -0.6 -2.1 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF4109 -0.6 -1.6 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) compare
GFF3053 -0.6 -2.3 Twitching motility protein PilT compare
GFF1912 -0.6 -1.7 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
GFF1150 -0.5 -0.9 unnamed protein product compare
GFF2358 -0.5 -1.4 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
GFF897 -0.5 -2.1 hypothetical protein compare
GFF78 -0.5 -1.6 Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB compare
GFF4305 -0.5 -1.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
GFF3117 -0.5 -1.4 Biopolymer transport protein ExbD/TolR compare
GFF3961 -0.5 -2.0 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
GFF4559 -0.5 -3.5 2-keto-3-deoxygluconate permease (KDG permease) compare
GFF3602 -0.5 -1.8 Type III secretion cytoplasmic protein (YscL) compare
GFF3397 -0.5 -2.8 Transcription-repair coupling factor compare
GFF3989 -0.5 -2.5 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
GFF1305 -0.5 -2.3 FIG006270: hypothetical protein compare
GFF3283 -0.5 -2.2 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.-) compare
GFF3538 -0.5 -0.5 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For phage S16_phage in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

For phage S16_phage across organisms