Experiment set3IT050 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with D-Cycloserine 0.032 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_17915 +1.9 9.5 LPS biosynthesis protein WbpP compare
CA264_12365 +1.8 16.0 asparagine synthetase B compare
CA264_14560 +1.8 7.5 VanZ family protein compare
CA264_15050 +1.8 16.1 3-hydroxyacyl-CoA dehydrogenase compare
CA264_15045 +1.7 10.3 acetyl-CoA acetyltransferase compare
CA264_12350 +1.7 11.2 glycosyltransferase family 1 protein compare
CA264_00015 +1.7 8.3 hypothetical protein compare
CA264_13015 +1.6 13.4 sensor histidine kinase compare
CA264_08265 +1.6 4.0 iron-sulfur cluster assembly accessory protein compare
CA264_04045 +1.5 14.4 hypothetical protein compare
CA264_12370 +1.5 11.2 hypothetical protein compare
CA264_12435 +1.5 9.1 GlcNAc-PI de-N-acetylase compare
CA264_12345 +1.5 6.8 lipid carrier--UDP-N-acetylgalactosaminyltransferase compare
CA264_07030 +1.4 8.8 UDP-glucose 4-epimerase compare
CA264_17760 +1.4 10.3 leucine dehydrogenase compare
CA264_08120 +1.4 8.9 electron transfer flavoprotein subunit alpha compare
CA264_12355 +1.4 8.3 polysaccharide deacetylase compare
CA264_07245 +1.3 7.9 hypothetical protein compare
CA264_12400 +1.3 8.5 hypothetical protein compare
CA264_15035 +1.3 10.4 acyl-CoA dehydrogenase compare
CA264_17905 +1.3 7.9 UDP-glucose 4-epimerase GalE compare
CA264_00410 +1.3 6.7 enoyl-CoA hydratase compare
CA264_17680 +1.3 8.1 CoB--CoM heterodisulfide reductase compare
CA264_12155 +1.2 1.5 histidine phosphatase family protein compare
CA264_05645 +1.2 5.6 L-serine dehydratase, iron-sulfur-dependent subunit beta compare
CA264_12390 +1.2 9.1 hypothetical protein compare
CA264_13130 +1.1 5.5 peptidase S1 compare
CA264_08115 +1.1 7.1 electron transfer flavoprotein subunit alpha compare
CA264_12325 +1.1 8.4 polysaccharide biosynthesis protein compare
CA264_01390 +1.1 6.6 iron ABC transporter permease compare
CA264_10920 +1.1 7.3 helix-turn-helix-type transcriptional regulator compare
CA264_12375 +1.1 7.5 hypothetical protein compare
CA264_17675 +1.1 6.9 Fe-S oxidoreductase compare
CA264_15880 +1.1 3.1 5-formyltetrahydrofolate cyclo-ligase compare
CA264_14935 +1.1 5.4 sec-independent protein translocase TatC compare
CA264_04610 +1.1 8.3 chain length determinant protein compare
CA264_01385 +1.1 8.3 iron ABC transporter substrate-binding protein compare
CA264_18345 +1.0 1.7 hypothetical protein compare
CA264_12465 +1.0 6.2 NAD-dependent dehydratase compare
CA264_11305 +1.0 6.2 transcriptional regulator compare
CA264_19150 +1.0 7.5 TonB dependent receptor compare
CA264_19090 +1.0 2.1 hypothetical protein compare
CA264_17640 +1.0 3.9 acyl-CoA dehydrogenase compare
CA264_18285 +1.0 8.3 hypothetical protein compare
CA264_06355 +1.0 7.5 ergothioneine biosynthesis protein EgtB compare
CA264_15175 +1.0 1.7 biopolymer transporter ExbD compare
CA264_14475 +1.0 5.0 hypothetical protein compare
CA264_12415 +1.0 6.8 hypothetical protein compare
CA264_12335 +1.0 6.1 pyridoxal phosphate-dependent aminotransferase compare
CA264_06345 +1.0 8.0 hypothetical protein compare
CA264_00400 +0.9 3.0 alkyl hydroperoxide reductase compare
CA264_12475 +0.9 5.8 alanine dehydrogenase compare
CA264_12385 +0.9 5.9 glycosyl transferase compare
CA264_08780 +0.9 6.7 hypothetical protein compare
CA264_16335 +0.9 2.6 hypothetical protein compare
CA264_12405 +0.9 5.6 hypothetical protein compare
CA264_12210 +0.9 4.1 hypothetical protein compare
CA264_20000 +0.8 1.8 cold-shock protein compare
CA264_13560 +0.8 1.2 membrane protein insertion efficiency factor YidD compare
CA264_16785 +0.8 6.9 methionine synthase compare
CA264_19145 +0.8 5.6 hypothetical protein compare
CA264_19005 +0.8 6.8 SusC/RagA family TonB-linked outer membrane protein compare
CA264_15265 +0.8 4.8 colicin v production protein compare
CA264_06600 +0.8 5.3 glycosyltransferase compare
CA264_13985 +0.8 4.5 3-oxoacyl-ACP reductase compare
CA264_12125 +0.8 4.0 glycosyl transferase family 1 compare
CA264_18495 +0.8 4.0 four helix bundle protein compare
CA264_20120 +0.8 1.5 hypothetical protein compare
CA264_12430 +0.8 4.4 nucleotidyltransferase compare
CA264_06610 +0.8 1.6 iron-dependent repressor compare
CA264_20700 +0.8 4.8 hypothetical protein compare
CA264_05185 +0.7 2.7 hypothetical protein compare
CA264_00405 +0.7 1.7 transcriptional repressor compare
CA264_18415 +0.7 5.6 alanine dehydrogenase compare
CA264_04415 +0.7 1.7 hypothetical protein compare
CA264_12215 +0.7 3.2 cupin compare
CA264_08260 +0.7 4.0 pseudouridine synthase compare
CA264_18135 +0.7 4.1 ABC transporter ATP-binding protein compare
CA264_16120 +0.7 3.0 sensor histidine kinase compare
CA264_02120 +0.7 2.7 GNAT family N-acetyltransferase compare
CA264_12220 +0.7 3.0 NAD-dependent dehydratase compare
CA264_15425 +0.7 1.6 DUF4834 domain-containing protein compare
CA264_12160 +0.7 1.6 transcriptional regulator compare
CA264_11360 +0.7 4.1 hypothetical protein compare
CA264_07740 +0.7 2.6 TIGR02757 family protein compare
CA264_17925 +0.7 3.7 chromate transporter compare
CA264_20465 +0.7 1.6 aspartate carbamoyltransferase compare
CA264_04495 +0.7 4.1 histidine kinase compare
CA264_16995 +0.7 4.6 hypothetical protein compare
CA264_02105 +0.7 3.5 hypothetical protein compare
CA264_12425 +0.7 2.8 CMP-N-acetylneuraminic acid synthetase compare
CA264_12115 +0.6 3.9 hypothetical protein compare
CA264_12150 +0.6 1.7 hypothetical protein compare
CA264_09985 +0.6 1.1 hypothetical protein compare
CA264_00780 +0.6 2.4 glyoxalase compare
CA264_14815 +0.6 1.4 transcriptional regulator compare
CA264_12130 +0.6 1.8 oxidoreductase compare
CA264_07485 +0.6 3.3 septal ring lytic transglycosylase RlpA family lipoprotein compare
CA264_15255 +0.6 3.6 alpha/beta hydrolase compare
CA264_20680 +0.6 2.4 hypothetical protein compare
CA264_03160 +0.6 1.7 metallophosphoesterase compare
CA264_13990 +0.6 2.8 1,4-beta-xylanase compare
CA264_09225 +0.6 3.3 Fe-S oxidoreductase compare
CA264_13980 +0.6 4.3 alpha-glucuronidase compare
CA264_21085 +0.6 2.7 hypothetical protein compare
CA264_03170 +0.6 0.8 hypothetical protein compare
CA264_13720 +0.6 2.0 hypothetical protein compare
CA264_12925 +0.6 1.8 hypothetical protein compare
CA264_05415 +0.6 2.6 DsbA family protein compare
CA264_04335 +0.6 3.6 restriction endonuclease subunit R compare
CA264_10955 +0.6 1.5 phenylacetate-CoA oxygenase subunit PaaJ compare
CA264_14565 +0.6 3.6 hypothetical protein compare
CA264_16470 +0.6 1.8 hypothetical protein compare
CA264_11970 +0.6 1.3 hypothetical protein compare
CA264_15875 +0.6 4.9 bacillithiol biosynthesis cysteine-adding enzyme BshC compare
CA264_07885 +0.6 2.0 phenazine biosynthesis protein PhzF family protein compare
CA264_04395 +0.6 3.2 ABC transporter ATP-binding protein compare
CA264_19685 +0.6 1.0 DNA-binding response regulator compare
CA264_13000 +0.6 0.9 cupin compare
CA264_06605 +0.6 2.2 ketoacyl-ACP synthase III compare
CA264_05785 +0.6 1.3 cbb3-type cytochrome oxidase assembly protein CcoS compare
CA264_19950 +0.6 2.3 hypothetical protein compare
CA264_16965 +0.6 2.5 hypothetical protein compare
CA264_01605 +0.6 4.2 arginase compare
CA264_09700 +0.6 0.5 hypothetical protein compare
CA264_20050 +0.6 2.6 hypothetical protein compare
CA264_01790 +0.6 1.9 hypothetical protein compare
CA264_04460 +0.6 1.4 ABC transporter compare
CA264_09005 +0.5 2.7 hypothetical protein compare
CA264_06330 +0.5 1.1 cation:proton antiporter compare
CA264_11020 +0.5 2.1 PadR family transcriptional regulator compare
CA264_19245 +0.5 3.0 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
CA264_15260 +0.5 1.0 glutamine amidotransferase compare
CA264_14510 +0.5 3.5 hypothetical protein compare
CA264_01480 +0.5 3.2 dihydroorotase compare
CA264_12300 +0.5 1.3 RNase III inhibitor compare
CA264_13405 +0.5 2.7 NAD-dependent dehydratase compare
CA264_14675 +0.5 1.9 hypothetical protein compare
CA264_11990 +0.5 1.4 hypothetical protein compare
CA264_17020 +0.5 2.8 methyltransferase type 11 compare
CA264_15080 +0.5 1.2 N-acetylmuramic acid 6-phosphate etherase compare
CA264_20660 +0.5 3.0 methylmalonyl Co-A mutase-associated GTPase MeaB compare
CA264_00115 +0.5 3.3 hypothetical protein compare
CA264_07315 +0.5 2.3 DNA-binding response regulator compare
CA264_08805 +0.5 2.0 inosine/xanthosine triphosphatase compare
CA264_16105 +0.5 2.6 3-hydroxybutyryl-CoA dehydrogenase compare
CA264_12140 +0.5 2.3 NAD-dependent dehydratase compare
CA264_01940 +0.5 2.2 antibiotic biosynthesis monooxygenase compare
CA264_04730 +0.5 2.1 uracil-DNA glycosylase compare
CA264_06445 +0.5 1.1 NUDIX hydrolase compare
CA264_18295 +0.5 3.8 iron-sulfur cluster-binding protein compare
CA264_14365 +0.5 2.7 radical SAM protein compare
CA264_16870 +0.5 2.4 N-acetyltransferase compare
CA264_10090 +0.5 1.7 (2Fe-2S)-binding protein compare
CA264_03155 +0.5 2.3 hypothetical protein compare
CA264_11715 +0.5 0.9 hypothetical protein compare
CA264_21205 +0.5 2.5 hypothetical protein compare
CA264_07425 +0.5 3.8 AI-2E family transporter compare
CA264_09190 +0.5 1.4 hypothetical protein compare
CA264_07625 +0.5 2.4 phosphohistidine phosphatase compare
CA264_16820 +0.5 1.6 hypothetical protein compare
CA264_06460 +0.5 2.2 NUDIX domain-containing protein compare
CA264_17350 +0.5 3.0 hypothetical protein compare
CA264_12940 +0.5 2.0 alcohol dehydrogenase compare
CA264_16980 +0.5 1.4 thiol reductase thioredoxin compare
CA264_15330 +0.5 4.0 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_09110 +0.5 1.5 mechanosensitive ion channel protein MscS compare
CA264_15040 +0.5 2.4 four helix bundle protein compare
CA264_17000 +0.5 3.0 phytoene dehydrogenase compare
CA264_18190 +0.5 2.1 hypothetical protein compare
CA264_00170 +0.5 1.8 ATP:cob(I)alamin adenosyltransferase compare
CA264_17030 +0.5 3.5 hypothetical protein compare
CA264_05500 +0.5 1.6 hypothetical protein compare
CA264_18880 +0.5 1.9 hypothetical protein compare
CA264_15325 +0.5 3.8 hypothetical protein compare
CA264_07965 +0.5 3.7 UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase compare
CA264_18480 +0.5 0.6 hypothetical protein compare
CA264_21285 +0.5 1.0 hypothetical protein compare
CA264_07800 +0.5 2.8 hypothetical protein compare
CA264_14930 +0.5 1.3 hypothetical protein compare
CA264_00305 +0.5 2.6 hypothetical protein compare
CA264_08915 +0.5 2.3 hypothetical protein compare
CA264_18745 +0.5 2.8 protein sphX compare
CA264_19010 +0.4 3.9 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_20935 +0.4 0.6 transcriptional regulator compare
CA264_15060 +0.4 3.3 long-chain fatty acid--CoA ligase compare
CA264_02595 +0.4 0.9 oxidoreductase compare
CA264_06860 +0.4 0.8 cytochrome C compare
CA264_11975 +0.4 2.6 hypothetical protein compare
CA264_15335 +0.4 3.9 SusC/RagA family TonB-linked outer membrane protein compare
CA264_01855 +0.4 1.7 carbonic anhydrase compare
CA264_04300 +0.4 2.3 ABC transporter substrate-binding protein compare
CA264_08435 +0.4 1.5 transcription elongation factor GreAB compare
CA264_14350 +0.4 2.1 hemolysin compare
CA264_05315 +0.4 3.2 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
CA264_02125 +0.4 1.9 alpha/beta hydrolase compare
CA264_08945 +0.4 2.0 type 1 glutamine amidotransferase domain-containing protein compare
CA264_06250 +0.4 1.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
CA264_06115 +0.4 2.3 acyl-CoA thioesterase compare
CA264_07900 +0.4 1.8 hypothetical protein compare


Specific Phenotypes

For 13 genes in this experiment

For stress D-Cycloserine in Pontibacter actiniarum KMM 6156, DSM 19842

For stress D-Cycloserine across organisms