Experiment set3IT050 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with P22_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF801 -4.3 -1.1 FIG01047026: hypothetical protein compare
GFF873 -3.9 -1.0 hypothetical protein compare
GFF1334 -3.6 -0.9 Uncharacterized protein YohL compare
GFF4417 -3.6 -2.5 Methionine ABC transporter ATP-binding protein compare
GFF1079 -3.5 -0.9 Homoserine kinase (EC 2.7.1.39) compare
GFF2430 -3.3 -1.2 Ferredoxin, 2Fe-2S compare
GFF1414 -3.0 -1.1 hypothetical protein compare
GFF4387 -2.9 -2.1 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF1781 -2.8 -2.6 Putative binding-protein-dependent transport system compare
GFF1088 -2.8 -0.7 FIG01045785: hypothetical protein compare
GFF3086 -2.7 -1.0 hypothetical protein compare
GFF1264 -2.5 -0.9 putative cytoplasmic protein compare
GFF713 -2.5 -0.6 FIG01047037: hypothetical protein compare
GFF1234 -2.3 -1.2 hypothetical protein compare
GFF3506 -2.3 -1.3 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF4468 -2.3 -1.7 Putative periplasmic protein compare
GFF1985 -2.3 -1.9 tRNA-Ala-GGC compare
GFF2413 -2.3 -1.5 FIG021952: putative membrane protein compare
GFF3722 -2.2 -1.0 Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux compare
GFF734 -2.2 -1.1 putative cytoplasmic protein compare
GFF2145 -2.1 -0.7 probable ribonuclease inhibitor YPO3690 compare
GFF399 -2.1 -2.1 FIG136845: Rhodanese-related sulfurtransferase compare
GFF1472 -2.1 -1.0 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF3037 -2.1 -1.0 hypothetical protein compare
GFF1981 -2.1 -1.1 FIG00638165: hypothetical protein compare
GFF992 -2.0 -1.4 hypothetical protein compare
GFF2690 -2.0 -1.5 Peptide transport system permease protein SapC compare
GFF645 -2.0 -0.9 Membrane protein associated with oxaloacetate decarboxylase compare
GFF4425 -2.0 -3.8 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) compare
GFF2948 -2.0 -2.6 PTS system nitrogen-specific IIA component, PtsN compare
GFF2001 -1.9 -0.8 Quaternary ammonium compound-resistance protein SugE compare
GFF752 -1.9 -1.1 Inner membrane protein compare
GFF4385 -1.9 -2.7 Primosomal replication protein N prime prime compare
GFF2638 -1.9 -2.5 D-lactate dehydrogenase (EC 1.1.1.28) compare
GFF1374 -1.9 -2.3 putative bacteriophage baseplate protein compare
GFF4386 -1.8 -1.9 FIG039061: hypothetical protein related to heme utilization compare
GFF236 -1.7 -0.6 FIG00545237: hypothetical protein compare
GFF2799 -1.7 -4.0 Inner membrane protein compare
GFF3117 -1.7 -1.4 Biopolymer transport protein ExbD/TolR compare
GFF4337 -1.7 -1.4 FIG001943: hypothetical protein YajQ compare
GFF1152 -1.6 -1.3 X polypeptide compare
GFF3229 -1.6 -1.4 Secreted effector protein compare
GFF2771 -1.6 -2.7 FIG002708: Protein SirB1 compare
GFF4596 -1.6 -1.8 Ferric uptake regulation protein FUR compare
GFF1977 -1.5 -3.6 Manganese transport protein MntH compare
GFF1857 -1.5 -1.0 Polymyxin resistance protein PmrG; Ais protein compare
GFF2640 -1.5 -0.9 probable lipoprotein YPO2331 compare
GFF1967 -1.5 -2.0 hypothetical protein compare
GFF2202 -1.5 -1.8 hypothetical protein compare
GFF285 -1.5 -1.6 16 kDa heat shock protein B compare
GFF3112 -1.5 -1.5 Putative membrane protein compare
GFF2675 -1.5 -1.5 Periplasmic Murein Peptide-Binding Protein MppA compare
GFF4430 -1.5 -2.6 Glycerate kinase (EC 2.7.1.31) compare
GFF4772 -1.4 -0.8 hypothetical protein compare
GFF4061 -1.4 -0.7 putative periplasmic protein compare
GFF1005 -1.4 -1.4 FIG00638610: hypothetical protein compare
GFF1014 -1.4 -0.8 PTS system, mannose-specific IIC component (EC 2.7.1.69) compare
GFF3104 -1.4 -0.7 Hydrogenase maturation protease (EC 3.4.24.-) compare
GFF906 -1.4 -0.5 FIG01047835: hypothetical protein compare
GFF2002 -1.4 -2.2 hypothetical protein compare
GFF2392 -1.4 -1.2 Peptide deformylase (EC 3.5.1.88) compare
GFF1952 -1.4 -2.4 FIG001674: hypothetical protein compare
GFF2620 -1.4 -0.8 FIG01045674: hypothetical protein compare
GFF4806 -1.4 -1.1 FIG01045727: hypothetical protein compare
GFF1747 -1.4 -0.9 putative inner membrane protein compare
GFF3341 -1.4 -1.1 DNA-damage-inducible protein I compare
GFF3570 -1.4 -0.6 FIG074102: hypothetical protein compare
GFF4436 -1.3 -3.1 FIG074102: hypothetical protein compare
GFF4636 -1.3 -1.9 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF4183 -1.3 -1.4 COG1496: Uncharacterized conserved protein compare
GFF3703 -1.3 -2.2 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
GFF2998 -1.3 -1.8 RNA-binding domain protein compare
GFF2639 -1.3 -1.2 Heat shock protein hslJ compare
GFF2803 -1.3 -1.6 Alanine racemase (EC 5.1.1.1) ## catabolic compare
GFF4399 -1.3 -3.0 Fosmidomycin resistance protein compare
GFF3743 -1.3 -2.4 FIG01046717: hypothetical protein compare
GFF3529 -1.3 -1.6 Vitamin B12 ABC transporter, permease component BtuC compare
GFF4395 -1.3 -5.2 Acetyl esterase (EC 3.1.1.-) compare
GFF3178 -1.2 -1.7 G:T/U mismatch-specific uracil/thymine DNA-glycosylase compare
GFF729 -1.2 -3.1 Dipeptide transport system permease protein DppB in protein degradation cluster compare
GFF2080 -1.2 -2.2 Ethanolamine utilization polyhedral-body-like protein EutM compare
GFF2021 -1.2 -1.5 FIG01049650: hypothetical protein compare
GFF4404 -1.2 -4.0 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
GFF4432 -1.2 -3.5 Allantoate amidohydrolase (EC 3.5.3.9) compare
GFF255 -1.2 -1.1 hypothetical protein compare
GFF4008 -1.2 -1.3 Flagellar biosynthesis protein FliP compare
GFF1736 -1.2 -0.4 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
GFF1941 -1.2 -1.7 FIG074102: hypothetical protein compare
GFF984 -1.2 -3.6 LysR family transcriptional regulator QseA compare
GFF2310 -1.2 -1.6 hypothetical protein compare
GFF2663 -1.2 -0.7 Thiol peroxidase, Tpx-type (EC 1.11.1.15) compare
GFF3460 -1.2 -1.4 Transglycosylase associated protein compare
GFF1864 -1.2 -0.7 Polymyxin resistance protein PmrM compare
GFF1934 -1.2 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF4426 -1.2 -3.4 Probable metabolite transport protein compare
GFF3484 -1.2 -1.4 FIG002003: Protein YdjA compare
GFF3913 -1.2 -2.3 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
GFF2656 -1.1 -2.4 Fumarate and nitrate reduction regulatory protein compare
GFF364 -1.1 -2.8 Transcriptional regulator, LysR family compare
GFF2623 -1.1 -0.5 Putative inner membrane protein compare
GFF2692 -1.1 -2.0 Peptide transport system ATP-binding protein SapF compare
GFF2635 -1.1 -0.6 Putative uncharacterized protein ydbL, may be related to amine metabolism compare
GFF1951 -1.1 -4.1 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
GFF4503 -1.1 -2.4 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) of siderophore biosynthesis compare
GFF2798 -1.1 -1.2 UPF0410 protein YmgE compare
GFF2941 -1.1 -1.6 Arabinose 5-phosphate isomerase (EC 5.3.1.13) compare
GFF1219 -1.1 -2.0 FIG01048676: hypothetical protein compare
GFF2269 -1.1 -0.8 hypothetical protein compare
GFF4412 -1.1 -2.8 Arylesterase precursor (EC 3.1.1.2) compare
GFF4650 -1.1 -1.3 4-hydroxybenzoyl-CoA thioesterase family active site compare
GFF4519 -1.1 -1.0 Universal stress protein G compare
GFF4784 -1.1 -1.4 Transcriptional regulator, MarR family compare
GFF4535 -1.1 -3.2 Lipid A acylation protein PagP, palmitoyltransferase compare
GFF1808 -1.1 -2.1 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF2719 -1.1 -1.6 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF2345 -1.1 -2.4 Acetylglutamate kinase (EC 2.7.2.8) compare
GFF1983 -1.1 -2.2 tRNA-Arg-CCT compare
GFF4861 -1.1 -1.2 L-fucose mutarotase compare
GFF316 -1.1 -2.2 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
GFF4184 -1.1 -3.8 ClpB protein compare
GFF201 -1.1 -0.8 Ferredoxin-like protein FixX compare
GFF2634 -1.1 -1.0 Gfa-like protein compare
GFF518 -1.0 -0.7 rRNA small subunit methyltransferase J compare
GFF1962 -1.0 -4.4 Phosphoglycerate transport system sensor protein PgtB (EC 2.7.3.-) compare
GFF1581 -1.0 -2.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
GFF2507 -1.0 -1.9 Multiple antibiotic resistance protein MarR compare
GFF2791 -1.0 -1.6 Hydrogenase maturation factor hoxO compare
GFF1978 -1.0 -2.8 Nucleoside permease NupC compare
GFF2484 -1.0 -0.4 FIG00639146: hypothetical protein compare
GFF4439 -1.0 -2.3 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
GFF2700 -1.0 -0.6 FIG01045186: hypothetical protein compare
GFF4403 -1.0 -2.5 Probable secreted protein compare
GFF651 -1.0 -1.9 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) compare
GFF2466 -1.0 -0.5 Sialic acid utilization regulator, RpiR family compare
GFF196 -1.0 -3.3 Choline-sulfatase (EC 3.1.6.6) compare
GFF160 -1.0 -2.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF3549 -1.0 -1.5 Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282) compare
GFF3154 -1.0 -1.5 Zinc transporter ZupT compare
GFF1968 -1.0 -2.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
GFF4411 -1.0 -3.1 Putative NAD(P)-dependent oxidoreductase EC-YbbO compare
GFF4418 -1.0 -3.0 Methionine ABC transporter permease protein compare
GFF2758 -1.0 -0.7 FIG01045187: hypothetical protein compare
GFF3246 -1.0 -2.7 ATP-dependent protease La (EC 3.4.21.53) Type II compare
GFF4465 -1.0 -0.9 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA compare
GFF1291 -1.0 -1.0 Phage minor tail protein #Phage minor tail protein T compare
GFF3669 -1.0 -0.8 Integration host factor beta subunit compare
GFF1645 -1.0 -3.1 FIG000859: hypothetical protein YebC compare
GFF4520 -1.0 -1.6 FIG01045303: hypothetical protein compare
GFF1155 -1.0 -2.2 IncF plasmid conjugative transfer pilin protein TraA compare
GFF1372 -1.0 -1.9 Putative phage tail protein compare
GFF4846 -1.0 -1.6 tRNA pseudouridine synthase C (EC 4.2.1.70) compare
GFF1281 -1.0 -0.8 Head decoration protein compare
GFF3466 -0.9 -2.1 Transcriptional regulator, AraC family compare
GFF4233 -0.9 -0.7 Fimbrial protein precursor compare
GFF1966 -0.9 -1.8 FIG00638164: hypothetical protein compare
GFF3200 -0.9 -1.2 Integral membrane protein compare
GFF352 -0.9 -0.6 FIG01048298: hypothetical protein compare
GFF2070 -0.9 -0.5 Ethanolamine utilization polyhedral-body-like protein EutK compare
GFF4140 -0.9 -1.0 putative cytoplasmic protein compare
GFF1375 -0.9 -1.4 hypothetical protein compare
GFF4096 -0.9 -0.7 FIG01047254: hypothetical protein compare
GFF1948 -0.9 -3.1 Putative membrane protein YfcA compare
GFF4530 -0.9 -3.3 [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) compare
GFF2733 -0.9 -1.1 Membrane protein YciC, linked to IspA compare
GFF4483 -0.9 -1.5 FIG074102: hypothetical protein compare
GFF987 -0.9 -0.6 FIG00637915: hypothetical protein compare
GFF4474 -0.9 -3.9 Outer membrane esterase compare
GFF941 -0.9 -1.7 Ribonuclease E inhibitor RraB compare
GFF2641 -0.9 -0.7 hypothetical protein compare
GFF1033 -0.9 -1.5 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
GFF910 -0.9 -1.9 Putative inner membrane protein compare
GFF1357 -0.9 -0.9 hypothetical protein compare
GFF3116 -0.9 -3.0 FIG00553873: hypothetical protein compare
GFF1408 -0.9 -2.3 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF472 -0.9 -1.0 hypothetical protein compare
GFF1621 -0.9 -0.8 DNA polymerase III theta subunit (EC 2.7.7.7) compare
GFF2468 -0.9 -0.5 Putative transmembrane transport protein compare
GFF4484 -0.9 -1.4 Transcriptional regulator, TetR family compare
GFF2688 -0.9 -2.5 Peptide transport periplasmic protein SapA compare
GFF3603 -0.9 -0.8 Secretion system apparatus protein SsaM compare
GFF4856 -0.9 -1.7 L-fuculose phosphate aldolase (EC 4.1.2.17) compare
GFF2418 -0.9 -1.5 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) compare
GFF2150 -0.9 -3.4 Transcriptional regulator, GntR family compare
GFF4270 -0.9 -0.4 FIG00637869: hypothetical protein compare
GFF4526 -0.9 -0.9 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF2045 -0.9 -0.8 hypothetical protein compare
GFF4358 -0.9 -0.6 FIG01200701: possible membrane protein compare
GFF1509 -0.9 -2.2 FIG139928: Putative protease compare
GFF2706 -0.9 -1.5 Inner membrane protein yciS compare
GFF2539 -0.9 -0.9 putative phage-related secreted protein compare
GFF194 -0.9 -1.7 Glutathione-regulated potassium-efflux system protein KefC compare
GFF1235 -0.9 -1.4 27.5 kDa virulence protein compare
GFF4421 -0.9 -2.3 Ureidoglycolate hydrolase (EC 3.5.3.19) compare
GFF204 -0.9 -2.8 Electron transfer flavoprotein, beta subunit FixA compare
GFF3832 -0.8 -1.6 FIG01045739: hypothetical protein compare
GFF2094 -0.8 -1.1 Putative outer membrane lipoprotein compare
GFF3248 -0.8 -2.7 Outer membrane protein A precursor compare
GFF3623 -0.8 -0.7 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF710 -0.8 -1.5 Outer membrane protein X precursor compare
GFF1965 -0.8 -3.9 Phosphoglycerate transporter protein PgtP compare


Specific Phenotypes

For 3 genes in this experiment

For phage P22_phage in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

For phage P22_phage across organisms