Experiment set3IT050 for Agrobacterium fabrum C58

Compare to:

D-Lysine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0031 -4.0 -2.3 PTS system, IIA component compare
Atu4773 -3.3 -3.2 two component response regulator compare
Atu0649 -2.4 -12.3 cyclopropane-fatty-acyl-phospholipid synthase compare
Atu2710 -2.4 -7.6 hypothetical protein compare
Atu1359 -2.3 -1.8 dnaK deletion suppressor protein compare
Atu6098 -2.2 -1.2 transcriptional regulator, HTH family compare
Atu3706 -2.0 -9.2 D-3-phosphoglycerate dehydrogenase compare
Atu2200 -1.9 -4.5 cold shock protein compare
Atu1307 -1.9 -4.6 dihydroorotase compare
Atu0029 -1.8 -7.2 S-adenosylhomocysteine hydrolase compare
Atu1308 -1.8 -5.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0025 -1.8 -2.8 hypothetical protein compare
Atu1159 -1.7 -6.5 arginine-tRNA-protein transferase compare
Atu3469 -1.7 -3.4 phosphoglyceromutase compare
Atu4019 -1.6 -6.7 two component response regulator compare
Atu3291 -1.6 -3.9 Lpr family transcriptional regulator compare
Atu4173 -1.5 -3.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu1364 -1.5 -5.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2267 -1.5 -5.7 hypothetical protein compare
Atu5007 -1.5 -5.6 santhopine-responsive transcriptional repressor compare
Atu1446 -1.5 -2.3 two component response regulator compare
Atu2650 -1.4 -8.7 glycerol-3-phosphate dehydrogenase compare
Atu2207 -1.4 -3.9 two component sensor kinase compare
Atu2155 -1.4 -10.6 methionine synthase compare
Atu3730 -1.4 -2.1 hypothetical protein compare
Atu0972 -1.4 -4.1 lipA protein compare
Atu0332 -1.4 -7.7 RNA polymerase sigma-54 factor compare
Atu2040 -1.3 -4.3 phosphoserine phosphatase compare
Atu4018 -1.3 -8.2 two component sensor kinase compare
Atu8118 -1.3 -4.9 putative universal stress protein compare
Atu2800 -1.3 -2.2 precorrin-3B C17-methyltransferase compare
Atu2555 -1.3 -3.3 L-lysine 2,3-aminomutase compare
Atu2192 -1.3 -1.6 hypothetical protein compare
Atu3707 -1.2 -3.0 phosphoserine aminotransferase compare
Atu1339 -1.2 -2.9 ribonuclease E compare
Atu3739 -1.2 -2.2 phosphoglycerate kinase compare
Atu1620 -1.2 -6.9 triosephosphate isomerase compare
Atu1030 -1.2 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0679 -1.1 -4.1 ATP phosphoribosyltransferase compare
Atu1075 -1.1 -4.5 amidophosphoribosyltransferase compare
Atu1714 -1.1 -1.8 exonuclease III compare
Atu4618 -1.1 -7.2 dTDP-rhamnose-3,5-epimerase compare
Atu1503 -1.1 -1.3 hypothetical protein compare
Atu0846 -1.1 -3.4 transcriptional regulator, MarR family compare
Atu4148 -1.1 -4.3 UDP-glucuronic acid epimerase compare
Atu3183 -1.0 -1.0 hypothetical protein compare
Atu1546 -1.0 -3.2 transcriptional regulator, MerR family compare
Atu0654 -1.0 -5.9 transcriptional regulator, LysR family compare
Atu2807 -1.0 -4.7 cob(I)alamin adenosyltransferase compare
Atu0035 -1.0 -5.4 phosphoenolpyruvate carboxykinase compare
Atu4711 -1.0 -4.9 two component sensor kinase compare
Atu4418 -1.0 -2.9 glutaryl-CoA dehydrogenase compare
Atu2801 -1.0 -3.0 precorrin-2 C20 methyltransferase compare
Atu0769 -1.0 -1.5 protoheme IX farnesyltransferase compare
Atu1140 -1.0 -3.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0977 -1.0 -2.9 serine protease DO-like protease compare
Atu8088 -1.0 -1.8 hypothetical protein compare
Atu1634 -1.0 -1.6 hypothetical protein compare
Atu4317 -1.0 -3.3 TetR family transcriptional regulator compare
Atu3293 -1.0 -4.6 D-amino acid dehydrogenase small subunit compare
Atu8025 -1.0 -1.5 hypothetical protein compare
Atu0400 -1.0 -3.5 orotate phosphoribosyltransferase compare
Atu2747 -0.9 -5.2 hypothetical protein compare
Atu1028 -0.9 -2.4 hypothetical protein compare
Atu2799 -0.9 -4.1 precorrin-6x reductase compare
Atu0263 -0.9 -5.4 oxidoreductase compare
Atu2057 -0.9 -1.8 DNA helicase II compare
Atu4617 -0.9 -4.4 dTDP-D-glucose-4,6-dehydratase compare
Atu2783 -0.9 -4.3 acetyltransferase compare
Atu0399 -0.9 -3.4 dihydroorotase compare
Atu2808 -0.9 -5.2 cobyric acid synthase compare
Atu0678 -0.9 -4.5 histidyl-tRNA synthetase compare
Atu4505 -0.9 -4.8 LacI family transcriptional regulator compare
Atu2123 -0.9 -3.9 methylenetetrahydrofolate reductase compare
Atu0803 -0.9 -6.7 pyruvate,orthophosphate dikinase compare
Atu2125 -0.9 -1.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0486 -0.9 -3.1 dihydroorotate dehydrogenase compare
Atu2802 -0.9 -3.9 precorrin-8X methylmutase compare
Atu1163 -0.9 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2495 -0.9 -3.6 flavoprotein oxidoreductase compare
Atu0262 -0.9 -4.5 acetyltransferase compare
Atu2796 -0.8 -3.1 precorrin-4 C11-methyltransferase compare
Atu0039 -0.8 -1.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu0647 -0.8 -4.2 phosphoribosylamine--glycine ligase compare
Atu3008 -0.8 -0.9 hypothetical protein compare
Atu3496 -0.8 -3.1 hypothetical protein compare
Atu4477 -0.8 -4.1 TetR family transcriptional regulator compare
Atu3292 -0.8 -5.0 alanine racemase compare
Atu1688 -0.8 -4.0 indole-3-glycerol-phosphate synthase compare
Atu1687 -0.8 -4.7 anthranilate phosphoribosyltransferase compare
Atu0346 -0.8 -2.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2067 -0.8 -0.8 hypothetical protein compare
Atu1780 -0.8 -4.7 ATP-dependent DNA helicase compare
Atu2183 -0.8 -3.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2804 -0.8 -5.5 cobaltochelatase subunit compare
Atu2115 -0.8 -4.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu3353 -0.8 -4.9 mannose-1-phosphate guanylyltransferase compare
Atu5115 -0.8 -1.1 hypothetical protein compare
Atu2408 -0.8 -4.5 urease accessory protein compare
Atu1858 -0.8 -3.1 hypothetical protein compare
Atu0537 -0.8 -4.2 histidinol dehydrogenase compare
Atu1110 -0.8 -1.6 cytosol aminopeptidase compare
Atu2432 -0.8 -1.5 hypothetical protein compare
Atu1629 -0.8 -1.1 transcriptional regulator, ArsR family compare
Atu0777 -0.8 -0.9 hypothetical protein compare
Atu1801 -0.8 -1.2 hypothetical protein compare
Atu0017 -0.8 -2.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2396 -0.8 -2.6 urease accessory protein compare
Atu2407 -0.8 -2.7 urease gamma subunit compare
Atu2578 -0.8 -2.7 cAMP-dependent protein kinase regulatory subunit compare
Atu0723 -0.8 -1.6 FAD dependent oxidoreductase compare
Atu0824 -0.8 -1.0 hypothetical protein compare
Atu4613 -0.8 -6.1 glycosyltransferase compare
Atu4615 -0.8 -3.7 glucose-1-phosphate thymidylyltransferase compare
Atu1774 -0.8 -3.5 ABC transporter, substrate binding protein (peptide) compare
Atu0298 -0.7 -3.7 orotidine 5 compare
Atu0432 -0.7 -3.8 O-succinylhomoserine sulfhydrylase compare
Atu2439 -0.7 -1.1 hypothetical protein compare
Atu0536 -0.7 -2.7 hypothetical protein compare
Atu4676 -0.7 -4.8 malate dehydrogenase compare
Atu1737 -0.7 -1.4 hypothetical protein compare
Atu0421 -0.7 -1.1 ABC transporter, membrane spanning protein compare
Atu0801 -0.7 -5.7 chromosome segregation protein compare
Atu0043 -0.7 -1.8 imidazoleglycerol-phosphate dehydratase compare
Atu1708 -0.7 -2.6 hypothetical protein compare
Atu0677 -0.7 -1.4 hypothetical protein compare
Atu3075 -0.7 -3.6 TetR family transcriptional regulator compare
Atu0837 -0.7 -3.8 transcriptional regulator, MarR family compare
Atu4614 -0.7 -3.8 glycosyltransferase compare
Atu1750 -0.7 -3.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu1052 -0.7 -2.5 hypothetical protein compare
Atu1707 -0.7 -3.7 hypothetical protein compare
Atu1103 -0.7 -2.0 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2433 -0.7 -1.0 hypothetical protein compare
Atu1369 -0.7 -2.2 HIT family protein compare
Atu0876 -0.7 -1.5 superoxide dismutase compare
Atu4407 -0.7 -1.8 periplasmic nitrate reductase, NapD protein compare
Atu0871 -0.7 -3.7 branched-chain-amino-acid aminotransferase compare
Atu3634 -0.7 -3.1 penicillin-binding protein dacf precursor compare
Atu1970 -0.6 -2.0 hypothetical protein compare
Atu2401 -0.6 -4.5 urease alpha subunit compare
Atu5430 -0.6 -0.8 hypothetical protein compare
Atu3009 -0.6 -0.9 exopolysaccharide production protein compare
Atu0095 -0.6 -3.1 hypothetical protein compare
Atu1677 -0.6 -2.5 queuine tRNA-ribosyltransferase compare
Atu0566 -0.6 -1.3 hypothetical protein compare
Atu2289 -0.6 -4.8 anthranilate synthase component I and II compare
Atu0322 -0.6 -2.0 enoyl CoA hydratase compare
Atu1141 -0.6 -2.0 Phosphoribosylglycinamide synthetase compare
Atu8019 -0.6 -1.8 hypothetical protein compare
Atu2757 -0.6 -3.2 nitrogen regulatory protein PII compare
Atu0361 -0.6 -0.9 transcriptional regulator compare
Atu3311 -0.6 -4.9 phosphomannose isomerase compare
Atu3755 -0.6 -2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0280 -0.6 -1.2 hypothetical protein compare
Atu0861 -0.6 -1.7 hypothetical protein compare
Atu0701 -0.6 -3.5 GGDEF family protein compare
Atu1844 -0.6 -1.8 Phosphoribosylformylglycinamidine synthetase compare
Atu2809 -0.6 -4.0 cobalamin biosynthesis protein compare
Atu3623 -0.6 -2.5 DnaJ family molecular chaperone compare
Atu0585 -0.6 -1.3 hypothetical protein compare
Atu2083 -0.6 -1.9 DNA repair protein RecN compare
Atu0340 -0.6 -1.4 SAM dependent methyltransferase compare
Atu0375 -0.6 -1.5 small heat shock protein compare
Atu0302 -0.6 -2.9 tetrapyrrole methylase family protein compare
Atu8162 -0.6 -0.8 hypothetical protein compare
Atu0041 -0.6 -1.2 glutamine amidotransferase compare
Atu0926 -0.6 -1.8 hypothetical protein compare
Atu1099 -0.5 -3.6 hypothetical protein compare
Atu2397 -0.5 -4.0 urease accessory protein compare
Atu4643 -0.5 -2.1 hypothetical protein compare
Atu2758 -0.5 -3.2 ammonium transporter compare
Atu0525 -0.5 -1.9 transcriptional regulator, LuxR family compare
Atu2718 -0.5 -2.7 homoserine O-succinyltransferase compare
Atu1589 -0.5 -2.6 aminotransferase, class I compare
Atu0190 -0.5 -2.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2306 -0.5 -3.2 methionine aminopeptidase compare
Atu0135 -0.5 -1.6 uracil phosphoribosyltransferase compare
Atu3120 -0.5 -0.7 hypothetical protein compare
Atu3429 -0.5 -0.9 hypothetical protein compare
Atu1573 -0.5 -1.1 hypothetical protein compare
Atu2398 -0.5 -2.7 urease accessory protein compare
Atu3750 -0.5 -1.6 thiamine-phosphate pyrophosphorylase compare
Atu1062 -0.5 -1.0 phosphatidylserine synthase compare
Atu8138 -0.5 -0.9 hypothetical protein compare
Atu3754 -0.5 -2.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0109 -0.5 -1.8 transcriptional regulator, MarR family compare
Atu1229 -0.5 -2.4 hypothetical protein compare
Atu0189 -0.5 -0.9 ABC transporter, membrane spanning protein (peptide) compare
Atu3313 -0.5 -2.4 hypothetical protein compare
Atu1098 -0.5 -1.3 hypothetical protein compare
Atu8034 -0.5 -1.6 hypothetical protein compare
Atu2276 -0.5 -3.1 ABC transporter, substrate binding protein (branched chain amino acid) compare
Atu3609 -0.5 -2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu2113 -0.5 -1.6 N-acetylmuramoyl-L-alanine amidase compare
Atu0501 -0.5 -3.9 acyl-CoA dehydrogenase compare
Atu5489 -0.5 -1.5 hypothetical protein compare
Atu3721 -0.5 -1.3 hypothetical protein compare
Atu1134 -0.5 -3.2 hypothetical protein compare
Atu3788 -0.5 -1.8 potassium-transporting ATPase subunit C compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source D-Lysine in Agrobacterium fabrum C58

For nitrogen source D-Lysine across organisms