Experiment set3IT049 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF824 -2.7 -4.6 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF2968 -2.6 -7.7 Stringent starvation protein A compare
GFF1808 -2.5 -6.7 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF3888 -2.5 -3.9 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF3905 -2.4 -9.9 regulator of length of O-antigen component of lipopolysaccharide chains compare
GFF3887 -2.4 -9.8 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF3886 -2.3 -9.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF3901 -2.2 -3.7 Phosphomannomutase (EC 5.4.2.8) compare
GFF2907 -2.2 -10.8 HTH-type transcriptional regulator hdfR compare
GFF389 -1.8 -4.2 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF3533 -1.7 -3.5 FIG00638687: hypothetical protein compare
GFF3990 -1.7 -1.8 hypothetical protein compare
GFF873 -1.7 -1.6 hypothetical protein compare
GFF3054 -1.6 -7.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
GFF4788 -1.6 -5.7 RNA polymerase sigma factor RpoS compare
GFF3149 -1.6 -8.8 Type I secretion outer membrane protein, TolC precursor compare
GFF4601 -1.5 -7.0 Phosphoglucomutase (EC 5.4.2.2) compare
GFF4160 -1.5 -3.2 UPF0125 protein yfjF compare
GFF1554 -1.4 -3.5 Putative transcriptional regulator compare
GFF2880 -1.4 -6.6 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF34 -1.4 -3.1 FIG01280259: hypothetical protein compare
GFF2698 -1.4 -7.0 Exoribonuclease II (EC 3.1.13.1) compare
GFF2537 -1.4 -1.7 hypothetical protein compare
GFF4837 -1.3 -7.7 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF2119 -1.3 -1.9 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF4789 -1.3 -5.1 Lipoprotein NlpD compare
GFF2906 -1.3 -3.6 Protein yifE compare
GFF233 -1.3 -4.2 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF366 -1.3 -4.8 Ribonuclease PH (EC 2.7.7.56) compare
GFF4770 -1.3 -1.6 transposase compare
GFF1699 -1.3 -1.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF1396 -1.3 -7.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF4839 -1.2 -8.3 BarA sensory histidine kinase (= VarS = GacS) compare
GFF3684 -1.2 -3.8 Hypothetical metal-binding enzyme, YcbL homolog compare
GFF4411 -1.2 -4.9 Putative NAD(P)-dependent oxidoreductase EC-YbbO compare
GFF1311 -1.2 -7.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
GFF3146 -1.2 -2.7 '3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)' transl_table=11 compare
GFF3041 -1.1 -1.1 hypothetical protein compare
GFF1348 -1.1 -1.4 FIG01046723: hypothetical protein compare
GFF2433 -1.1 -4.4 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF1815 -1.1 -3.1 Electron transport complex protein RnfA compare
GFF2758 -1.1 -1.3 FIG01045187: hypothetical protein compare
GFF597 -1.1 -2.4 DNA-damage-inducible protein J compare
GFF269 -1.1 -3.0 NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) compare
GFF2881 -1.1 -6.0 WzxE protein compare
GFF1662 -1.1 -2.6 Chemotaxis response - phosphatase CheZ compare
GFF1503 -1.1 -4.2 Lipoprotein nlpI precursor compare
GFF3643 -1.1 -4.6 Electron transport complex protein RnfG compare
GFF3603 -1.1 -1.8 Secretion system apparatus protein SsaM compare
GFF3566 -1.1 -1.9 major outer membrane lipoprotein compare
GFF3613 -1.1 -4.6 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
GFF365 -1.1 -2.7 Protein YicC compare
GFF2431 -1.1 -2.5 Chaperone protein HscA compare
GFF794 -1.1 -1.9 Phage holin compare
GFF3515 -1.0 -1.7 FIG00637864: hypothetical protein compare
GFF2882 -1.0 -5.7 Lipopolysaccharide biosynthesis protein RffA compare
GFF2104 -1.0 -1.7 ATP-dependent RNA helicase SrmB compare
GFF3749 -1.0 -4.2 Nucleoid-associated protein NdpA compare
GFF1591 -1.0 -1.8 Transcription repressor of tripartite multidrug resistance system compare
GFF1914 -1.0 -1.4 Cell division inhibitor compare
GFF1033 -1.0 -3.5 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
GFF2110 -1.0 -2.2 Sigma factor RpoE regulatory protein RseC compare
GFF2573 -1.0 -1.7 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF1234 -1.0 -1.1 hypothetical protein compare
GFF2967 -1.0 -2.5 ClpXP protease specificity-enhancing factor / Stringent starvation protein B compare
GFF2434 -0.9 -0.6 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF2051 -0.9 -5.0 Predicted transcriptional regulator of pyridoxine metabolism compare
GFF3748 -0.9 -0.8 FIG002927: hypothetical protein compare
GFF2750 -0.9 -3.9 Thymidine kinase (EC 2.7.1.21) compare
GFF2248 -0.9 -2.1 FIG00642734: hypothetical protein compare
GFF3789 -0.9 -2.8 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) compare
GFF4579 -0.9 -4.2 tRNA-i(6)A37 methylthiotransferase compare
GFF1936 -0.9 -5.1 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) compare
GFF4111 -0.9 -1.1 Curlin genes transcriptional activator compare
GFF2475 -0.9 -1.3 Ribonuclease III (EC 3.1.26.3) compare
GFF3642 -0.9 -2.0 Electron transport complex protein RnfE compare
GFF3397 -0.9 -5.3 Transcription-repair coupling factor compare
GFF3996 -0.9 -4.1 DNA-cytosine methyltransferase (EC 2.1.1.37) compare
GFF4519 -0.9 -1.3 Universal stress protein G compare
GFF4634 -0.9 -3.4 Citrate synthase (si) (EC 2.3.3.1) compare
GFF325 -0.9 -2.5 PTS system, gluconate-specific IIB component (EC 2.7.1.69) compare
GFF2845 -0.9 -2.1 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF1734 -0.9 -4.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
GFF3890 -0.9 -1.1 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF1259 -0.9 -2.5 Error-prone repair protein UmuD compare
GFF975 -0.9 -1.8 FIG074102: hypothetical protein compare
GFF189 -0.9 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF1806 -0.9 -1.9 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF1816 -0.9 -3.9 Electron transport complex protein RnfB compare
GFF3772 -0.9 -1.2 1-phosphofructokinase (EC 2.7.1.56) compare
GFF848 -0.9 -1.2 Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69) compare
GFF1933 -0.8 -2.9 DedA protein compare
GFF1559 -0.8 -1.8 hypothetical protein compare
GFF2303 -0.8 -4.3 Putative uncharacterized protein YiiQ compare
GFF1735 -0.8 -3.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
GFF1981 -0.8 -1.0 FIG00638165: hypothetical protein compare
GFF2952 -0.8 -2.0 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) compare
GFF2016 -0.8 -5.8 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF2921 -0.8 -1.5 FIG004454: RNA binding protein compare
GFF1207 -0.8 -4.0 Probable regulatory protein compare
GFF2539 -0.8 -1.4 putative phage-related secreted protein compare
GFF945 -0.8 -1.8 Aspartate N-acetyltransferase (EC 2.3.1.17) compare
GFF3342 -0.8 -5.3 Dihydroorotase (EC 3.5.2.3) compare
GFF3506 -0.8 -1.3 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF3040 -0.8 -4.7 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
GFF75 -0.8 -1.0 Major fimbrial subunit StfA compare
GFF1338 -0.8 -1.6 Putative outer membrane protein compare
GFF2039 -0.8 -2.0 Putative cytochrome oxidase compare
GFF2555 -0.8 -2.2 Stationary-phase-induced ribosome-associated protein compare
GFF2430 -0.8 -1.1 Ferredoxin, 2Fe-2S compare
GFF1385 -0.8 -0.9 hypothetical protein compare
GFF2755 -0.8 -3.3 UPF0225 protein YchJ compare
GFF2973 -0.8 -2.9 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF89 -0.8 -3.0 Poly(A) polymerase (EC 2.7.7.19) compare
GFF1674 -0.8 -2.2 Universal stress protein C compare
GFF2922 -0.8 -1.6 Transcription elongation factor GreA compare
GFF338 -0.8 -3.5 Putative sensory transducer compare
GFF2031 -0.8 -1.0 FIG01046611: hypothetical protein compare
GFF1863 -0.8 -0.9 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF213 -0.7 -4.0 Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) compare
GFF3601 -0.7 -1.6 Type III secretion protein SsaK compare
GFF3409 -0.7 -1.5 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
GFF3644 -0.7 -1.4 Electron transport complex protein RnfD compare
GFF2991 -0.7 -1.5 Tyrosine recombinase XerD compare
GFF3988 -0.7 -2.2 Error-prone repair protein UmuD compare
GFF587 -0.7 -2.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF1076 -0.7 -1.4 Aerobic respiration control protein arcA compare
GFF930 -0.7 -4.5 Aspartate carbamoyltransferase (EC 2.1.3.2) compare
GFF1619 -0.7 -4.1 Copper resistance protein D compare
GFF1768 -0.7 -0.7 hypothetical protein compare
GFF3154 -0.7 -1.8 Zinc transporter ZupT compare
GFF214 -0.7 -3.0 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) compare
GFF415 -0.7 -1.2 FIG074102: hypothetical protein compare
GFF4844 -0.7 -1.8 FIG01046344: hypothetical protein compare
GFF4371 -0.7 -1.4 methylated-DNA--protein-cysteine methyltransferase-related protein compare
GFF2258 -0.7 -1.3 Inner membrane protein compare
GFF3703 -0.7 -2.2 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
GFF2719 -0.7 -2.0 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF2338 -0.7 -3.8 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) compare
GFF2949 -0.7 -2.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
GFF3022 -0.7 -4.8 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) compare
GFF969 -0.7 -1.1 FIG007491: hypothetical protein YeeN compare
GFF367 -0.7 -3.1 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF3635 -0.7 -1.1 Membrane-bound lysozyme inhibitor of c-type lysozyme compare
GFF1610 -0.7 -0.9 hypothetical protein compare
GFF2310 -0.7 -2.6 hypothetical protein compare
GFF3071 -0.7 -1.4 hypothetical protein compare
GFF3743 -0.7 -1.4 FIG01046717: hypothetical protein compare
GFF4647 -0.7 -2.8 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF2201 -0.7 -2.2 putative DNA-binding protein compare
GFF3026 -0.7 -2.8 ATPase component STY3232 of energizing module of queuosine-regulated ECF transporter compare
GFF3484 -0.7 -1.3 FIG002003: Protein YdjA compare
GFF257 -0.7 -3.8 Putative carboxymethylenebutenolidase (EC 3.1.1.45) compare
GFF588 -0.7 -3.0 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) compare
GFF973 -0.7 -1.4 FIG074102: hypothetical protein compare
GFF4232 -0.7 -2.1 Putative fimbrial chaperone compare
GFF3274 -0.7 -2.5 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
GFF4042 -0.7 -2.6 SAM-dependent methyltransferase YafE (UbiE paralog) compare
GFF1480 -0.7 -3.5 Fumarate respiration transcriptional regulator DcuR compare
GFF2194 -0.7 -1.2 FIG01046050: hypothetical protein compare
GFF87 -0.7 -1.2 C4-type zinc finger protein, DksA/TraR family compare
GFF728 -0.7 -3.4 Dipeptide transport system, periplasmic component in protein degradation cluster compare
GFF3324 -0.6 -0.6 putative periplasmic protein compare
GFF2704 -0.6 -1.1 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 compare
GFF3012 -0.6 -2.6 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF3236 -0.6 -2.8 Dihydroorotate dehydrogenase (EC 1.3.3.1) compare
GFF3087 -0.6 -2.8 FIG074102: hypothetical protein compare
GFF2966 -0.6 -2.8 Transcriptional regulator NanR compare
GFF3063 -0.6 -2.7 FIG002060: uncharacterized protein YggL compare
GFF3196 -0.6 -0.8 Inner membrane protein YqjE compare
GFF3826 -0.6 -1.2 FIG00510335: hypothetical protein compare
GFF4624 -0.6 -0.7 Putative glycosyl transferase compare
GFF805 -0.6 -1.5 Phage protein compare
GFF4644 -0.6 -1.1 hypothetical protein compare
GFF3066 -0.6 -4.1 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
GFF3460 -0.6 -1.5 Transglycosylase associated protein compare
GFF3874 -0.6 -2.0 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) compare
GFF3513 -0.6 -2.1 Putative membrane protein compare
GFF1861 -0.6 -2.6 Polymyxin resistance protein PmrJ, predicted deacetylase compare
GFF2160 -0.6 -1.5 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF4350 -0.6 -0.5 hypothetical protein compare
GFF4759 -0.6 -2.0 Surface presentation of antigens protein SpaM compare
GFF1013 -0.6 -3.1 PTS system, mannose-specific IIB component (EC 2.7.1.69) compare
GFF2461 -0.6 -3.8 Transglycosylase, Slt family compare
GFF1423 -0.6 -3.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) compare
GFF714 -0.6 -1.5 Mn-dependent transcriptional regulator MntR compare
GFF2679 -0.6 -2.6 Transcriptional repressor protein TyrR compare
GFF750 -0.6 -2.4 Transcriptional regulator, TetR family compare
GFF2249 -0.6 -0.9 Putative merR family bacterial regulatory protein compare
GFF1058 -0.6 -3.4 NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) compare
GFF4865 -0.6 -2.6 Glycine cleavage system transcriptional activator GcvA compare
GFF3558 -0.6 -1.2 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF4109 -0.6 -2.6 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) compare
GFF4656 -0.6 -2.7 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
GFF4243 -0.6 -0.5 Probable secreted protein compare
GFF4805 -0.6 -1.4 FIG01046225: hypothetical protein compare
GFF2885 -0.6 -4.3 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF1383 -0.6 -1.3 FIG00639790: hypothetical protein compare
GFF3744 -0.6 -2.4 O-antigen acetylase compare
GFF1675 -0.6 -2.1 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage FelixO1_phage (old) across organisms