Experiment set3IT046 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with MreB Perturbing Compound A22 0.04 mg/ml

Group: stress
Media: marine_broth_2216 + MreB Perturbing Compound A22 (0.04 mg/ml)
Culturing: Ponti_ML7, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.9 generations
By: Adam on 8-May-17
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 1740 B3

Specific Phenotypes

For 31 genes in this experiment

For stress MreB Perturbing Compound A22 in Pontibacter actiniarum KMM 6156, DSM 19842

For stress MreB Perturbing Compound A22 across organisms

SEED Subsystems

Subsystem #Specific
DNA Repair Base Excision 1
De Novo Pyrimidine Synthesis 1
Glycerol and Glycerol-3-phosphate Uptake and Utilization 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Heat shock dnaK gene cluster extended 1
Heme and Siroheme Biosynthesis 1
KDO2-Lipid A biosynthesis 1
MLST 1
Nitrate and nitrite ammonification 1
Pyruvate Alanine Serine Interconversions 1
Rhamnose containing glycans 1
dTDP-rhamnose synthesis 1
linker unit-arabinogalactan synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
UDP-α-D-galacturonate biosynthesis I (from UDP-D-glucuronate) 1 1 1
L-alanine degradation IV 1 1 1
nitrate reduction V (assimilatory) 2 1 1
alkylnitronates degradation 2 1 1
glycerol degradation I 3 2 1
glycerol and glycerophosphodiester degradation 4 3 1
dTDP-N-acetylviosamine biosynthesis 4 2 1
dTDP-β-D-fucofuranose biosynthesis 4 2 1
dTDP-6-deoxy-α-D-allose biosynthesis 4 2 1
dTDP-N-acetylthomosamine biosynthesis 4 2 1
dTDP-β-L-rhamnose biosynthesis 5 5 1
dTDP-4-O-demethyl-β-L-noviose biosynthesis 5 4 1
dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis 5 3 1
dTDP-α-D-mycaminose biosynthesis 5 3 1
dTDP-3-acetamido-α-D-fucose biosynthesis 5 3 1
UMP biosynthesis II 6 6 1
UMP biosynthesis I 6 5 1
UMP biosynthesis III 6 5 1
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis 6 4 1
dTDP-α-D-ravidosamine and dTDP-4-acetyl-α-D-ravidosamine biosynthesis 6 3 1
dTDP-L-daunosamine biosynthesis 6 3 1
dTDP-sibirosamine biosynthesis 6 3 1
dTDP-D-desosamine biosynthesis 6 2 1
dTDP-β-L-digitoxose biosynthesis 7 3 1
dTDP-β-L-olivose biosynthesis 7 3 1
L-ascorbate biosynthesis V (euglena, D-galacturonate pathway) 7 2 1
dTDP-β-L-mycarose biosynthesis 7 2 1
dTDP-β-L-megosamine biosynthesis 8 3 1
dTDP-β-L-4-epi-vancosamine biosynthesis 8 3 1
superpathway of pyrimidine ribonucleotides de novo biosynthesis 9 8 1
UDP-sugars interconversion 9 4 1
dTDP-α-D-olivose, dTDP-α-D-oliose and dTDP-α-D-mycarose biosynthesis 9 3 1
dTDP-α-D-forosamine biosynthesis 9 3 1
superpathway of enterobacterial common antigen biosynthesis 10 2 1
O-antigen building blocks biosynthesis (E. coli) 11 8 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 18 17 1
superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis 19 7 1
superpathway of novobiocin biosynthesis 19 4 1
superpathway of erythromycin biosynthesis 19 2 1
superpathway of megalomicin A biosynthesis 22 3 1
superpathway of dTDP-glucose-derived antibiotic building blocks biosynthesis 23 3 1
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis 33 10 1
superpathway of histidine, purine, and pyrimidine biosynthesis 46 42 1