Experiment set3IT046 for Agrobacterium fabrum C58

Compare to:

L-Cysteine hydrochloride monohydrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu8036 -6.3 -6.1 protein YBGT-like protein compare
Atu3707 -6.2 -4.3 phosphoserine aminotransferase compare
Atu4089 -6.0 -12.9 ABC transporter permease compare
Atu1446 -5.8 -4.0 two component response regulator compare
Atu4092 -5.7 -16.8 cytochrome d oxidase subunit II compare
Atu2790 -5.3 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu1750 -5.2 -7.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu1687 -5.0 -13.4 anthranilate phosphoribosyltransferase compare
Atu0678 -5.0 -9.0 histidyl-tRNA synthetase compare
Atu4090 -5.0 -20.5 ABC transporter permease compare
Atu2791 -4.9 -9.6 3-isopropylmalate dehydrogenase compare
Atu0017 -4.9 -4.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4091 -4.9 -16.6 cytochrome d oxidase compare
Atu2289 -4.8 -19.4 anthranilate synthase component I and II compare
Atu2709 -4.7 -19.8 3-isopropylmalate dehydratase, large subunit compare
Atu1688 -4.7 -8.5 indole-3-glycerol-phosphate synthase compare
Atu0099 -4.7 -13.7 prephenate dehydratase compare
Atu0038 -4.5 -5.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0043 -4.5 -4.4 imidazoleglycerol-phosphate dehydratase compare
Atu0537 -4.5 -8.5 histidinol dehydrogenase compare
Atu3706 -4.4 -10.5 D-3-phosphoglycerate dehydrogenase compare
Atu2040 -4.3 -7.5 phosphoserine phosphatase compare
Atu1205 -4.3 -16.7 threonine dehydratase compare
Atu3740 -4.3 -13.4 fructose bisphosphate aldolase compare
Atu0679 -4.2 -9.0 ATP phosphoribosyltransferase compare
Atu2264 -4.2 -14.2 2-isopropylmalate synthase compare
Atu2036 -4.1 -17.0 acetolactate synthase III, large subunit compare
Atu0035 -4.0 -11.0 phosphoenolpyruvate carboxykinase compare
Atu4505 -4.0 -11.1 LacI family transcriptional regulator compare
Atu4081 -3.9 -11.4 aspartate racemase compare
Atu3739 -3.9 -4.5 phosphoglycerate kinase compare
Atu3469 -3.8 -4.5 phosphoglyceromutase compare
Atu4082 -3.8 -10.2 AsnC family transcriptional regulator compare
Atu1307 -3.8 -6.9 dihydroorotase compare
Atu3885 -3.7 -12.1 inositol monophosphatase compare
Atu6098 -3.7 -1.6 transcriptional regulator, HTH family compare
Atu0039 -3.7 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu1588 -3.7 -12.3 homoserine dehydrogenase compare
Atu0400 -3.6 -5.5 orotate phosphoribosyltransferase compare
Atu1850 -3.6 -5.8 phosphoribosylformylglycinamidine synthetase II compare
Atu3754 -3.6 -8.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0346 -3.6 -7.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0399 -3.5 -9.8 dihydroorotase compare
Atu2650 -3.5 -10.5 glycerol-3-phosphate dehydrogenase compare
Atu1844 -3.5 -3.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1620 -3.4 -13.5 triosephosphate isomerase compare
Atu0298 -3.3 -10.3 orotidine 5 compare
Atu1308 -3.1 -7.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0486 -3.1 -6.0 dihydroorotate dehydrogenase compare
Atu0647 -3.0 -9.1 phosphoribosylamine--glycine ligase compare
Atu1075 -2.9 -9.6 amidophosphoribosyltransferase compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2718 -2.8 -9.5 homoserine O-succinyltransferase compare
Atu1445 -2.8 -8.1 two component sensor kinase compare
Atu1141 -2.7 -6.7 Phosphoribosylglycinamide synthetase compare
Atu1140 -2.5 -7.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3755 -2.5 -4.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2015 -2.5 -12.6 aminotransferase compare
Atu0332 -2.4 -11.7 RNA polymerase sigma-54 factor compare
Atu0251 -2.4 -13.3 hypothetical protein compare
Atu3763 -2.4 -3.1 hypothetical protein compare
Atu2640 -2.3 -6.3 hypothetical protein compare
Atu2115 -2.3 -10.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1589 -2.3 -6.0 aminotransferase, class I compare
Atu1845 -2.2 -5.3 phosphoribosylformylglycinamidine synthase I compare
Atu3296 -2.2 -12.7 two component response regulator for C4-dicarboxylate transport compare
Atu3298 -2.2 -12.0 C4-dicarboxylate transporter DctA compare
Atu1030 -2.1 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4711 -2.1 -7.3 two component sensor kinase compare
Atu3297 -2.1 -12.5 two component sensor kinase for C4-dicarboxylate transport compare
Atu3783 -2.1 -12.3 glutamate synthase subunit beta compare
Atu3784 -2.0 -16.0 glutamate synthase large subunit compare
Atu1686 -2.0 -13.5 peptidyl-prolyl cis-trans isomerse D compare
Atu3468 -1.9 -1.6 hypothetical protein compare
Atu1359 -1.8 -1.7 dnaK deletion suppressor protein compare
Atu0434 -1.6 -3.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2684 -1.6 -2.3 hypothetical protein compare
Atu0422 -1.6 -1.8 ABC transporter, membrane spanning protein compare
Atu0030 -1.6 -2.0 phosphocarrier protein HPr compare
Atu1291 -1.5 -2.1 hypothetical protein compare
Atu3730 -1.5 -2.1 hypothetical protein compare
Atu3663 -1.5 -1.9 hypothetical protein compare
Atu3482 -1.5 -6.8 pantoate--beta-alanine ligase compare
Atu4096 -1.4 -9.1 nicotinate-nucleotide pyrophosphorylase compare
Atu6114 -1.4 -1.9 hypothetical protein compare
Atu4773 -1.4 -2.3 two component response regulator compare
Atu3483 -1.4 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2548 -1.4 -9.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1327 -1.3 -3.6 NADH-ubiquinone oxidoreductase compare
Atu0941 -1.3 -1.3 hypothetical protein compare
Atu4098 -1.3 -7.9 quinolinate synthetase compare
Atu0029 -1.3 -5.0 S-adenosylhomocysteine hydrolase compare
Atu4217 -1.3 -2.1 TetR family transcriptional regulator compare
Atu4097 -1.3 -7.2 L-aspartate oxidase compare
Atu1810 -1.2 -1.7 hypothetical protein compare
Atu3290 -1.2 -7.5 phosphomethylpyrimidine kinase compare
Atu3467 -1.2 -3.5 hypothetical protein compare
Atu8056 -1.1 -1.4 hypothetical protein compare
Atu2207 -1.1 -3.7 two component sensor kinase compare
Atu3121 -1.1 -1.5 cold shock protein compare
Atu3908 -1.1 -7.3 GntR family transcriptional regulator compare
Atu0031 -1.1 -1.5 PTS system, IIA component compare
Atu4088 -1.1 -3.2 transcriptional regulator compare
Atu2662 -1.1 -1.5 acetyltransferase compare
Atu3288 -1.0 -4.0 hydroxyethylthiazole kinase compare
Atu0979 -1.0 -6.3 two component sensor kinase compare
Atu1573 -1.0 -2.1 hypothetical protein compare
Atu2569 -1.0 -6.3 thiamine biosynthesis protein compare
Atu0971 -1.0 -3.4 two component sensor kinase compare
Atu0354 -1.0 -2.0 ferric uptake regulator compare
Atu0977 -1.0 -3.1 serine protease DO-like protease compare
Atu1462 -0.9 -6.1 glycine cleavage system protein P2 compare
Atu3012 -0.9 -1.0 hypothetical protein compare
Atu8115 -0.9 -3.8 Hypothetical Protein compare
Atu0533 -0.9 -2.1 putative inhibitor of septum formation compare
Atu1463 -0.9 -4.1 glycine cleavage system component H compare
Atu3913 -0.9 -5.0 biotin carboxylase compare
Atu0953 -0.9 -1.1 hypothetical protein compare
Atu0986 -0.8 -1.3 hypothetical protein compare
Atu1039 -0.8 -3.1 DNA repair protein RecO compare
Atu1580 -0.8 -4.3 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu1770 -0.8 -5.0 glutamine synthetase compare
Atu0978 -0.8 -4.2 two component response regulator compare
Atu1464 -0.8 -4.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu1444 -0.8 -3.2 nitrogen regulation protein compare
Atu0319 -0.8 -1.2 ubiquinone biosynthesis protein compare
Atu4148 -0.8 -3.0 UDP-glucuronic acid epimerase compare
Atu1579 -0.8 -5.1 ABC transporter, membrane spanning protein (amino acid) compare
Atu0966 -0.8 -2.0 hypothetical protein compare
Atu4075 -0.8 -4.7 glycogen synthase compare
Atu0086 -0.8 -1.1 ribosome-binding factor A compare
Atu4317 -0.8 -2.8 TetR family transcriptional regulator compare
Atu3008 -0.8 -0.9 hypothetical protein compare
Atu0641 -0.8 -2.6 hypothetical protein compare
Atu1219 -0.8 -1.0 hypothetical protein compare
Atu3697 -0.8 -2.3 ATP-dependent protease LA 2 compare
Atu1577 -0.8 -2.9 ABC transporter, substrate binding protein (amino acid) compare
Atu1624 -0.8 -5.1 transcriptional regulator, TetR family compare
Atu0025 -0.7 -1.4 hypothetical protein compare
Atu8176 -0.7 -1.6 hypothetical protein compare
Atu0093 -0.7 -3.3 Recombination protein compare
Atu1028 -0.7 -2.0 hypothetical protein compare
Atu1124 -0.7 -2.5 hypothetical protein compare
Atu0723 -0.7 -1.3 FAD dependent oxidoreductase compare
Atu2425 -0.7 -4.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0189 -0.7 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0912 -0.7 -0.8 Na+/H+ antiporter compare
Atu1364 -0.7 -3.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0690 -0.7 -1.7 hypothetical protein compare
Atu2335 -0.7 -1.9 hypothetical protein compare
Atu4882 -0.7 -1.7 hypothetical protein compare
Atu0237 -0.7 -2.3 hypothetical protein compare
Atu3045 -0.7 -2.9 hypothetical protein compare
Atu0566 -0.7 -1.6 hypothetical protein compare
Atu2426 -0.7 -3.8 ABC transporter, membrane spanning protein (branched chain amino acid) compare
Atu1904 -0.7 -2.2 transcriptional regulator compare
Atu3912 -0.6 -3.1 hypothetical protein compare
Atu2376 -0.6 -0.5 hypothetical protein compare
Atu4702 -0.6 -2.8 GntR family transcriptional regulator compare
Atu4050 -0.6 -2.0 UTP-glucose-1-phosphate uridylyltransferase compare
Atu2710 -0.6 -3.6 hypothetical protein compare
Atu1160 -0.6 -2.3 hypothetical protein compare
Atu2532 -0.6 -2.2 transcriptional regulator, MarR family compare
Atu3910 -0.6 -2.8 LamB/YcsF family protein compare
Atu3289 -0.6 -2.7 thiamine-phosphate pyrophosphorylase compare
Atu1851 -0.6 -1.8 BolA/YrbA family protein compare
Atu2205 -0.6 -2.2 transcriptional regulator, MarR family compare
Atu2200 -0.6 -1.7 cold shock protein compare
Atu0861 -0.6 -2.6 hypothetical protein compare
Atu5451 -0.6 -0.6 hypothetical protein compare
Atu2204 -0.6 -1.9 hypothetical protein compare
Atu0141 -0.6 -0.9 cytochrome O ubiquinol oxidase subunit I compare
Atu2427 -0.6 -3.7 ABC transporter, membrane spanning protein compare
Atu0382 -0.6 -1.8 hypothetical protein compare
Atu3727 -0.6 -2.3 hypothetical protein compare
Atu1442 -0.6 -3.4 competence/damage-inducible protein CinA compare
Atu0876 -0.6 -1.2 superoxide dismutase compare
Atu1103 -0.6 -1.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu8144 -0.6 -2.3 hypothetical protein compare
Atu3009 -0.6 -0.9 exopolysaccharide production protein compare
Atu2728 -0.6 -2.6 beta (1-->2) glucan export ATP-binding protein compare
Atu1774 -0.6 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu1848 -0.6 -2.7 transcriptional regulator, GntR family compare
Atu2798 -0.6 -2.6 precorrin-6y methyltransferase compare
Atu2028 -0.6 -1.8 transcriptional regulator, ArsR family compare
Atu1592 -0.6 -2.4 hypothetical protein compare
Atu1983 -0.6 -2.0 hypothetical protein compare
Atu2424 -0.6 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1522 -0.6 -3.2 transcriptional regulator, LacI family compare
Atu1508 -0.6 -2.7 hypothetical protein compare
Atu1578 -0.6 -3.0 ABC transporter, membrane spanning protein (amino acid) compare
Atu0885 -0.5 -1.8 hypothetical protein compare
Atu2370 -0.5 -3.4 hypothetical protein compare
Atu3731 -0.5 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu1077 -0.5 -1.5 DNA repair protein compare
Atu3075 -0.5 -3.3 TetR family transcriptional regulator compare
Atu3287 -0.5 -2.0 thiamine biosynthesis associated protein compare
Atu8018 -0.5 -0.5 hypothetical protein compare
Atu0166 -0.5 -2.1 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source L-Cysteine hydrochloride monohydrate in Agrobacterium fabrum C58

For nitrogen source L-Cysteine hydrochloride monohydrate across organisms