Experiment set3IT045 for Pseudomonas simiae WCS417

Compare to:

LB with 2-Furfuraldehyde 0.06 vol%

200 most important genes:

  gene name fitness t score description  
PS417_23950 -3.6 -4.8 polynucleotide phosphorylase/polyadenylase compare
PS417_23770 -3.5 -4.7 exodeoxyribonuclease V subunit alpha compare
PS417_27800 -3.4 -10.4 exodeoxyribonuclease III compare
PS417_03855 -2.7 -13.6 NADH dehydrogenase conserved
PS417_22690 -2.6 -5.4 phosphogluconate dehydratase compare
PS417_26990 -2.6 -2.2 RNA pyrophosphohydrolase compare
PS417_01605 -2.3 -2.1 phosphoglycerate mutase compare
PS417_05975 -2.2 -1.6 chemotaxis protein CheW compare
PS417_20985 -2.1 -5.0 porin compare
PS417_27865 -2.1 -6.6 LysR family transcriptional regulator compare
PS417_02485 -2.1 -5.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_18355 -2.0 -7.5 DNA-binding protein compare
PS417_03560 -2.0 -3.6 GTP-binding protein compare
PS417_16555 -1.8 -3.3 cupin compare
PS417_24155 -1.8 -3.0 ATP-binding protein compare
PS417_06375 -1.8 -1.5 deoxycytidine triphosphate deaminase compare
PS417_22620 -1.7 -5.5 pyruvate kinase compare
PS417_03260 -1.6 -3.7 5S ribosomal RNA compare
PS417_23995 -1.5 -1.3 preprotein translocase subunit SecG compare
PS417_09035 -1.5 -4.4 hypothetical protein compare
PS417_23375 -1.5 -2.5 cytochrome C oxidase compare
PS417_14115 -1.5 -6.1 molybdate ABC transporter substrate-binding protein compare
PS417_08670 -1.5 -4.7 molybdopterin biosynthesis protein B compare
PS417_01915 -1.5 -1.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_17215 -1.4 -3.8 peptidylprolyl isomerase compare
PS417_02555 -1.4 -8.9 exoribonuclease R compare
PS417_05815 -1.4 -4.3 recombinase RecA compare
PS417_04865 -1.4 -5.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_14120 -1.4 -9.0 molybdenum ABC transporter permease compare
PS417_06370 -1.4 -2.3 cold-shock protein compare
PS417_27610 -1.4 -7.6 hypothetical protein compare
PS417_22445 -1.3 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_21395 -1.3 -7.8 radical SAM protein compare
PS417_04375 -1.3 -3.9 ABC transporter ATP-binding protein compare
PS417_23385 -1.3 -6.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_08540 -1.3 -3.3 RNA helicase compare
PS417_23045 -1.3 -3.5 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_00515 -1.2 -7.1 membrane protein compare
PS417_22450 -1.2 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_23915 -1.2 -3.1 pantoate--beta-alanine ligase compare
PS417_06680 -1.1 -7.3 nuclease PIN compare
PS417_00455 -1.1 -3.1 hypothetical protein compare
PS417_05985 -1.1 -3.0 chemotaxis protein CheY compare
PS417_01095 -1.1 -2.4 amino acid ABC transporter ATP-binding protein compare
PS417_23370 -1.1 -3.8 protoheme IX farnesyltransferase compare
PS417_22695 -1.1 -5.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_00180 -1.1 -2.1 tryptophan synthase subunit alpha compare
PS417_01850 -1.1 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_04875 -1.1 -1.3 molybdenum cofactor biosynthesis protein MoaE compare
PS417_13050 -1.0 -2.1 N-acetylglucosamine-6-sulfatase compare
PS417_14655 -1.0 -1.5 lysine transporter LysE compare
PS417_03100 -1.0 -1.2 pilus assembly protein compare
PS417_02720 -1.0 -1.4 TetR family transcriptional regulator compare
PS417_10890 -1.0 -5.3 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_00160 -1.0 -2.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_05840 -1.0 -3.2 LuxR family transcriptional regulator compare
PS417_08675 -1.0 -4.3 molybdenum cofactor biosynthesis protein MoaA compare
PS417_04590 -1.0 -5.5 methyltransferase compare
PS417_01920 -1.0 -2.0 ATP-dependent protease subunit HslV compare
PS417_27135 -1.0 -1.1 glutamine synthetase compare
PS417_08380 -1.0 -4.2 ABC transporter ATP-binding protein compare
PS417_04385 -1.0 -4.5 organic solvent ABC transporter substrate-binding protein compare
PS417_04650 -0.9 -1.5 D-alanine--D-alanine ligase compare
PS417_21680 -0.9 -2.4 succinylglutamate desuccinylase compare
PS417_02210 -0.9 -5.3 diguanylate cyclase compare
PS417_08435 -0.9 -2.0 pilus assembly protein PilZ compare
PS417_11585 -0.9 -2.4 LuxR family transcriptional regulator compare
PS417_05160 -0.9 -0.9 DNA polymerase III subunit chi compare
PS417_22840 -0.9 -1.4 tRNA-Met compare
PS417_00925 -0.9 -1.9 hypothetical protein compare
PS417_22945 -0.9 -2.3 phosphoribosylglycinamide formyltransferase compare
PS417_28070 -0.9 -3.7 phosphate ABC transporter ATP-binding protein compare
PS417_24265 -0.9 -4.1 ABC transporter ATP-binding protein compare
PS417_23390 -0.9 -4.4 ubiquinol oxidase subunit II compare
PS417_08220 -0.9 -1.0 epimerase compare
PS417_25225 -0.9 -1.4 MFS transporter compare
PS417_14125 -0.9 -2.2 molybdenum ABC transporter ATP-binding protein compare
PS417_02495 -0.9 -1.1 GTPase HflX compare
PS417_07420 -0.9 -2.7 restriction endonuclease compare
PS417_19095 -0.9 -1.6 hypothetical protein compare
PS417_01560 -0.8 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_06395 -0.8 -2.2 amino acid transporter compare
PS417_10885 -0.8 -3.9 Deoxyribose 1-dehydrogenase, beta subunit (from data) compare
PS417_27870 -0.8 -2.5 ATP-dependent DNA helicase RecG compare
PS417_21655 -0.8 -1.2 aspartate kinase compare
PS417_15100 -0.8 -2.3 BatB protein compare
PS417_06540 -0.8 -1.7 membrane protein compare
PS417_22875 -0.8 -1.7 hypothetical protein compare
PS417_10920 -0.8 -2.4 LysR family transcriptional regulator compare
PS417_27605 -0.8 -3.0 hypothetical protein compare
PS417_17070 -0.8 -1.3 RNA polymerase subunit sigma-24 compare
PS417_08125 -0.8 -1.1 prephenate dehydratase compare
PS417_08205 -0.7 -2.3 acetyltransferase compare
PS417_20170 -0.7 -2.0 hypothetical protein compare
PS417_18435 -0.7 -1.8 hypothetical protein compare
PS417_27205 -0.7 -2.6 adenylate cyclase compare
PS417_02895 -0.7 -1.1 precorrin-6Y C5,15-methyltransferase compare
PS417_22520 -0.7 -1.3 histidine kinase compare
PS417_04380 -0.7 -1.4 ABC transporter permease compare
PS417_23135 -0.7 -1.5 GTP-binding protein compare
PS417_23775 -0.7 -1.5 exodeoxyribonuclease V subunit beta compare
PS417_16870 -0.7 -1.7 short-chain dehydrogenase compare
PS417_09010 -0.7 -2.0 phosphohistidine phosphatase compare
PS417_11405 -0.7 -2.3 precorrin 6A synthase compare
PS417_15095 -0.7 -2.2 hypothetical protein compare
PS417_14045 -0.7 -2.6 alkyl hydroperoxide reductase compare
PS417_21955 -0.7 -1.5 dehydrogenase compare
PS417_02225 -0.7 -2.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_09590 -0.7 -2.7 membrane protein compare
PS417_03920 -0.7 -2.5 dephospho-CoA kinase compare
PS417_16750 -0.7 -2.0 ABC transporter ATP-binding protein compare
PS417_08665 -0.7 -2.3 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_00080 -0.7 -4.9 potassium transporter peripheral membrane component compare
PS417_07140 -0.7 -2.2 peptidase M48 compare
PS417_21510 -0.7 -1.0 histidine kinase compare
PS417_06745 -0.7 -1.8 polysaccharide deacetylase compare
PS417_21000 -0.7 -1.9 CrfX protein compare
PS417_25645 -0.7 -2.4 peptidase M23 compare
PS417_15895 -0.7 -1.4 iron dicitrate transport regulator FecR compare
PS417_04895 -0.7 -2.2 carboxylesterase compare
PS417_18540 -0.7 -1.8 colicin V production CvpA compare
PS417_19415 -0.7 -1.7 allantoinase compare
PS417_08025 -0.7 -0.8 acetylornithine aminotransferase compare
PS417_16000 -0.7 -1.6 chemotaxis protein CheY compare
PS417_18350 -0.7 -2.8 hypothetical protein compare
PS417_22050 -0.7 -2.7 ribonuclease BN compare
PS417_22205 -0.7 -4.2 potassium transporter TrkH compare
PS417_10880 -0.6 -3.5 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_22570 -0.6 -0.7 H-NS histone compare
PS417_10480 -0.6 -1.4 glutathione S-transferase compare
PS417_23455 -0.6 -2.3 LrgA compare
PS417_17945 -0.6 -0.8 hypothetical protein compare
PS417_06895 -0.6 -3.0 DNA-binding protein compare
PS417_16490 -0.6 -1.4 cell division protein FtsK compare
PS417_19430 -0.6 -1.3 ureidoglycolate hydrolase compare
PS417_07305 -0.6 -1.9 3-beta hydroxysteroid dehydrogenase compare
PS417_05650 -0.6 -2.1 leucyl-tRNA synthetase compare
PS417_01620 -0.6 -1.4 preprotein translocase subunit SecB compare
PS417_07575 -0.6 -1.9 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_15090 -0.6 -1.9 hypothetical protein compare
PS417_10220 -0.6 -1.4 hypothetical protein compare
PS417_13010 -0.6 -1.6 alpha/beta hydrolase compare
PS417_08195 -0.6 -3.5 hypothetical protein compare
PS417_28050 -0.6 -1.0 hypothetical protein compare
PS417_26365 -0.6 -1.5 EmrB/QacA subfamily drug resistance transporter compare
PS417_21490 -0.6 -3.3 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
PS417_21185 -0.6 -1.6 hypothetical protein compare
PS417_08200 -0.6 -1.5 hypothetical protein compare
PS417_19645 -0.6 -1.6 chemotaxis protein compare
PS417_15560 -0.6 -2.3 hypothetical protein compare
PS417_19965 -0.6 -4.1 histidine kinase compare
PS417_00045 -0.6 -1.6 glycerol acyltransferase compare
PS417_18690 -0.6 -2.0 aromatic amino acid aminotransferase compare
PS417_23205 -0.6 -1.2 transcriptional regulator compare
PS417_23330 -0.6 -1.6 hypothetical protein compare
PS417_20575 -0.6 -3.3 ATP-dependent helicase HrpA compare
PS417_24835 -0.6 -2.5 hypothetical protein compare
PS417_00450 -0.6 -2.1 chemotaxis protein CheY compare
PS417_06445 -0.6 -1.4 iron-siderophore ABC transporter permease compare
PS417_03965 -0.6 -2.5 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_19720 -0.6 -0.8 DNA-binding protein compare
PS417_01270 -0.6 -1.1 iron ABC transporter substrate-binding protein compare
PS417_17400 -0.6 -3.3 TetR family transcriptional regulator compare
PS417_05165 -0.6 -2.1 cytosol aminopeptidase compare
PS417_12310 -0.6 -3.8 methionine synthase compare
PS417_23380 -0.6 -1.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_21210 -0.6 -1.0 amidotransferase compare
PS417_23420 -0.6 -2.4 LuxR family transcriptional regulator compare
PS417_09200 -0.6 -2.4 ABC transporter compare
PS417_04585 -0.6 -1.2 hypothetical protein compare
PS417_21830 -0.6 -1.4 TetR family transcriptional regulator compare
PS417_24430 -0.6 -1.0 3-dehydroquinate dehydratase compare
PS417_02995 -0.5 -2.1 NUDIX hydrolase compare
PS417_06075 -0.5 -1.0 hypothetical protein compare
PS417_23725 -0.5 -1.6 methylmalonate-semialdehyde dehydrogenase compare
PS417_26760 -0.5 -1.9 oxidase compare
PS417_06200 -0.5 -2.8 protein-PII uridylyltransferase compare
PS417_27040 -0.5 -1.1 3-phosphoglycerate dehydrogenase compare
PS417_20635 -0.5 -0.6 ABC transporter ATP-binding protein compare
PS417_03810 -0.5 -2.2 hypothetical protein compare
PS417_17925 -0.5 -1.4 acyl-CoA dehydrogenase compare
PS417_25975 -0.5 -3.1 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_21515 -0.5 -3.0 transcriptional regulator compare
PS417_15885 -0.5 -0.8 GCN5 family acetyltransferase compare
PS417_03345 -0.5 -2.6 type I secretion protein TolC compare
PS417_11475 -0.5 -1.0 membrane protein compare
PS417_25895 -0.5 -1.3 glyoxalase compare
PS417_15650 -0.5 -0.9 glutamine amidotransferase compare
PS417_08770 -0.5 -1.5 hypothetical protein compare
PS417_12175 -0.5 -1.5 peptide ABC transporter permease compare
PS417_12840 -0.5 -2.0 TetR family transcriptional regulator compare
PS417_06205 -0.5 -3.4 methionine aminopeptidase compare
PS417_01685 -0.5 -1.6 membrane protein compare
PS417_24290 -0.5 -2.4 hypothetical protein compare
PS417_02560 -0.5 -1.1 23S rRNA methyltransferase compare
PS417_28325 -0.5 -1.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_14605 -0.5 -0.9 adenylate kinase compare
PS417_00920 -0.5 -2.8 diguanylate cyclase compare
PS417_24500 -0.5 -1.9 DEAD/DEAH box helicase compare
PS417_07855 -0.5 -2.2 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For stress 2-Furfuraldehyde in Pseudomonas simiae WCS417

For stress 2-Furfuraldehyde across organisms