Experiment set3IT045 for Pseudomonas simiae WCS417

Compare to:

LB with 2-Furfuraldehyde 0.06 vol%

Group: stress
Media: LB + 2-Furfuraldehyde (0.06 vol%)
Culturing: fluoroDangl_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 3/2/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1166 B7,B8

Specific Phenotypes

For 7 genes in this experiment

For stress 2-Furfuraldehyde in Pseudomonas simiae WCS417

For stress 2-Furfuraldehyde across organisms

SEED Subsystems

Subsystem #Specific
Molybdenum cofactor biosynthesis 2
Transport of Molybdenum 2
Carboxysome 1
N-heterocyclic aromatic compound degradation 1
Respiratory dehydrogenases 1 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
NADH to cytochrome bo oxidase electron transfer I 2 2 1
NADH to cytochrome bo oxidase electron transfer II 2 2 1
NADH to nitrate electron transfer 2 2 1
NADH to cytochrome bd oxidase electron transfer II 2 1 1
nitrate reduction VIIIb (dissimilatory) 2 1 1
NADH to cytochrome bd oxidase electron transfer I 2 1 1
NADH to cytochrome aa3 oxidase electron transfer 2 1 1
aerobic respiration III (alternative oxidase pathway) 3 3 1
aerobic respiration II (cytochrome c) (yeast) 4 3 1
aerobic respiration I (cytochrome c) 4 3 1
mitochondrial NADPH production (yeast) 5 4 1
NAD(P)/NADPH interconversion 6 3 1
Fe(II) oxidation 6 3 1
2-deoxy-D-ribose degradation II 8 7 1
superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) 8 7 1