Experiment set3IT045 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

L-Citrulline nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Echvi_2193 +3.9 35.2 Transcriptional regulators compare
Echvi_1897 +3.6 17.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Echvi_1747 +2.6 17.6 amino acid carrier protein compare
Echvi_0180 +2.5 7.3 transcription elongation factor GreA compare
Echvi_1898 +2.2 12.4 Signal transduction histidine kinase compare
Echvi_2047 +1.9 15.1 RNA polymerase sigma factor, sigma-70 family compare
Echvi_4081 +1.9 2.4 Malic enzyme compare
Echvi_3914 +1.8 16.6 Transcriptional regulators compare
Echvi_0368 +1.7 3.9 hypothetical protein compare
Echvi_0035 +1.7 10.0 Domain of Unknown Function (DUF349). compare
Echvi_0367 +1.6 6.7 hypothetical protein compare
Echvi_2861 +1.5 4.4 6-phosphogluconate dehydrogenase, decarboxylating compare
Echvi_0710 +1.5 7.2 hypothetical protein compare
Echvi_3803 +1.4 9.4 Response regulator of the LytR/AlgR family compare
Echvi_1492 +1.4 3.1 hypothetical protein compare
Echvi_3910 +1.4 9.9 Transcriptional regulator/sugar kinase compare
Echvi_0128 +1.4 2.8 hypothetical protein compare
Echvi_0090 +1.4 2.5 Iron-sulfur cluster assembly accessory protein compare
Echvi_1247 +1.4 2.4 single stranded DNA-binding protein (ssb) compare
Echvi_4549 +1.4 2.3 Histidine kinase./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_2984 +1.4 8.0 hypothetical protein compare
Echvi_0293 +1.3 3.8 hypothetical protein compare
Echvi_3277 +1.3 3.9 Cell division protein compare
Echvi_2679 +1.3 2.2 hypothetical protein compare
Echvi_3918 +1.2 1.5 Histone H1-like protein Hc1. compare
Echvi_0395 +1.2 3.2 DNA repair proteins compare
Echvi_2447 +1.2 5.5 competence/damage-inducible protein CinA C-terminal domain compare
Echvi_1838 +1.1 2.0 hypothetical protein compare
Echvi_2624 +1.1 3.2 hypothetical protein compare
Echvi_0985 +1.1 4.2 Predicted membrane protein compare
Echvi_2238 +1.1 3.3 hypothetical protein compare
Echvi_0482 +1.0 3.0 Uncharacterized protein conserved in bacteria compare
Echvi_0613 +1.0 2.3 hypothetical protein compare
Echvi_4033 +1.0 5.4 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
Echvi_0114 +1.0 5.1 N-acetylmuramoyl-L-alanine amidase compare
Echvi_1881 +1.0 2.7 ADP-ribose pyrophosphatase compare
Echvi_3746 +1.0 3.6 hypothetical protein compare
Echvi_0986 +1.0 3.8 Rrf2 family protein compare
Echvi_2824 +1.0 7.9 hypothetical protein compare
Echvi_1140 +0.9 5.9 Response regulator of the LytR/AlgR family compare
Echvi_3283 +0.9 3.2 Lactoylglutathione lyase and related lyases compare
Echvi_2227 +0.9 5.8 Predicted signal-transduction protein containing cAMP-binding and CBS domains compare
Echvi_4640 +0.9 1.0 hypothetical protein compare
Echvi_3922 +0.9 2.8 hypothetical protein compare
Echvi_4582 +0.9 3.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_0892 +0.9 1.9 Predicted transcriptional regulators compare
Echvi_4058 +0.9 2.1 PspC domain. compare
Echvi_2201 +0.9 1.8 hypothetical protein compare
Echvi_2108 +0.9 1.4 Predicted small integral membrane protein compare
Echvi_1728 +0.8 3.3 pseudouridylate synthase I compare
Echvi_0808 +0.8 6.4 hypothetical protein compare
Echvi_1139 +0.8 6.1 Putative regulator of cell autolysis compare
Echvi_4308 +0.8 1.3 hypothetical protein compare
Echvi_0641 +0.8 0.9 Transposase and inactivated derivatives compare
Echvi_4022 +0.8 2.3 hypothetical protein compare
Echvi_3911 +0.8 6.7 alpha-1,2-mannosidase, putative compare
Echvi_2633 +0.8 4.7 gamma-glutamylphosphate reductase (EC 1.2.1.41) (from data) compare
Echvi_3381 +0.8 7.5 Pregnancy-associated plasma protein-A. compare
Echvi_3451 +0.8 1.2 hypothetical protein compare
Echvi_4659 +0.8 2.4 hypothetical protein compare
Echvi_2244 +0.8 1.7 hypothetical protein compare
Echvi_2503 +0.8 1.2 hypothetical protein compare
Echvi_1356 +0.8 1.0 hypothetical protein compare
Echvi_3001 +0.8 2.4 Predicted membrane protein compare
Echvi_2626 +0.8 4.4 Predicted membrane protein compare
Echvi_4161 +0.8 1.4 hypothetical protein compare
Echvi_2529 +0.8 5.9 Acyl-CoA reductase (LuxC). compare
Echvi_3195 +0.8 1.6 hypothetical protein compare
Echvi_2444 +0.8 4.4 Predicted cysteine protease (OTU family) compare
Echvi_2217 +0.8 1.8 hypothetical protein compare
Echvi_2347 +0.8 5.4 Fructose-2,6-bisphosphatase compare
Echvi_4270 +0.8 3.4 hypothetical protein compare
Echvi_4325 +0.8 2.9 hypothetical protein compare
Echvi_0622 +0.8 5.0 gliding motility-associated protein GldL compare
Echvi_3753 +0.8 3.8 hypothetical protein compare
Echvi_4674 +0.8 2.0 Nucleotidyltransferase substrate binding protein like. compare
Echvi_1218 +0.7 4.8 aspartate kinase compare
Echvi_0959 +0.7 2.6 rRNA methylases compare
Echvi_1865 +0.7 1.0 hypothetical protein compare
Echvi_0678 +0.7 1.7 hypothetical protein compare
Echvi_0954 +0.7 6.0 SusD family. compare
Echvi_4550 +0.7 2.7 hypothetical protein compare
Echvi_3557 +0.7 1.8 Protein of unknown function (DUF2874). compare
Echvi_4242 +0.7 1.9 DNA repair proteins compare
Echvi_3786 +0.7 5.0 nucleotide sugar dehydrogenase compare
Echvi_0201 +0.7 3.4 alanine dehydrogenase compare
Echvi_1946 +0.7 1.8 hypothetical protein compare
Echvi_4650 +0.7 3.3 Uncharacterized protein conserved in bacteria compare
Echvi_1742 +0.7 1.0 Uncharacterized protein conserved in archaea compare
Echvi_3229 +0.7 3.0 hypothetical protein compare
Echvi_2555 +0.7 0.9 hypothetical protein compare
Echvi_2393 +0.7 1.3 uracil-DNA glycosylase compare
Echvi_3764 +0.7 1.4 Predicted transcriptional regulators compare
Echvi_0594 +0.7 2.3 hypoxanthine phosphoribosyltransferase compare
Echvi_3044 +0.6 2.0 hypothetical protein compare
Echvi_0955 +0.6 6.0 TonB-linked outer membrane protein, SusC/RagA family compare
Echvi_4093 +0.6 1.8 Bacteroides conjugative transposon TraM protein compare
Echvi_0785 +0.6 4.7 Fatty acid desaturase. compare
Echvi_1777 +0.6 4.3 Multidrug resistance efflux pump compare
Echvi_1689 +0.6 1.2 hypothetical protein compare
Echvi_2937 +0.6 1.5 Uncharacterized conserved protein compare
Echvi_0849 +0.6 2.2 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Echvi_0157 +0.6 1.2 hexose kinase, 1-phosphofructokinase family compare
Echvi_0291 +0.6 0.6 hypothetical protein compare
Echvi_2958 +0.6 3.6 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Echvi_0179 +0.6 3.0 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Echvi_0014 +0.6 5.5 PAS domain S-box compare
Echvi_2680 +0.6 2.4 hypothetical protein compare
Echvi_0024 +0.6 2.2 Protein of unknown function (DUF1684). compare
Echvi_4559 +0.6 2.7 FAD dependent oxidoreductase TIGR03364 compare
Echvi_3070 +0.6 1.2 hypothetical protein compare
Echvi_3377 +0.6 2.3 Uncharacterized protein conserved in bacteria compare
Echvi_2697 +0.6 2.1 hypothetical protein compare
Echvi_0374 +0.6 3.5 Predicted membrane protein compare
Echvi_3300 +0.6 1.6 hypothetical protein compare
Echvi_2184 +0.6 2.2 hypothetical protein compare
Echvi_3788 +0.6 3.1 hypothetical protein compare
Echvi_4076 +0.6 2.2 Membrane-bound metallopeptidase compare
Echvi_2862 +0.6 1.6 glucose-6-phosphate 1-dehydrogenase compare
Echvi_0318 +0.6 2.3 mraZ protein compare
Echvi_2635 +0.6 3.2 pyrroline-5-carboxylate reductase compare
Echvi_0339 +0.6 3.1 Tetratricopeptide repeat. compare
Echvi_0169 +0.6 4.8 hypothetical protein compare
Echvi_2267 +0.6 3.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Echvi_2155 +0.6 4.2 PAS domain S-box compare
Echvi_3864 +0.6 3.7 Glycosyltransferase compare
Echvi_3244 +0.6 2.0 hypothetical protein compare
Echvi_0129 +0.6 3.4 hypothetical protein compare
Echvi_2289 +0.6 2.3 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family compare
Echvi_4023 +0.6 2.7 Cytochrome c peroxidase compare
Echvi_3811 +0.6 3.7 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain compare
Echvi_0584 +0.6 3.3 peptide chain release factor 3 compare
Echvi_0299 +0.6 4.3 gliding motility-associated ABC transporter permease protein GldF compare
Echvi_4074 +0.6 4.0 Tetratricopeptide repeat. compare
Echvi_2274 +0.6 3.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Echvi_2247 +0.6 2.3 hypothetical protein compare
Echvi_3278 +0.6 1.7 hypothetical protein compare
Echvi_2045 +0.6 4.4 Glucoamylase and related glycosyl hydrolases compare
Echvi_2207 +0.6 1.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Echvi_4593 +0.6 2.5 hypothetical protein compare
Echvi_3223 +0.6 2.1 Mn-dependent transcriptional regulator compare
Echvi_0008 +0.6 1.9 hypothetical protein compare
Echvi_2685 +0.6 1.9 hypothetical protein compare
Echvi_0025 +0.6 1.0 DNA repair proteins compare
Echvi_2821 +0.6 3.5 hypothetical protein compare
Echvi_1365 +0.6 0.9 hypothetical protein compare
Echvi_1831 +0.6 2.3 Fe2+/Zn2+ uptake regulation proteins compare
Echvi_4099 +0.6 0.8 hypothetical protein compare
Echvi_1199 +0.6 2.3 Methyltransferase domain. compare
Echvi_1868 +0.6 2.5 hypothetical protein compare
Echvi_2234 +0.6 3.8 GH3 auxin-responsive promoter. compare
Echvi_3471 +0.6 3.0 Phosphoglycerate dehydrogenase and related dehydrogenases compare
Echvi_3341 +0.5 2.6 Predicted membrane protein compare
Echvi_3358 +0.5 1.8 hypothetical protein compare
Echvi_2402 +0.5 1.1 hypothetical protein compare
Echvi_3470 +0.5 3.1 DNA-3-methyladenine glycosylase (3mg) compare
Echvi_2810 +0.5 4.0 MFS transporter, sugar porter (SP) family compare
Echvi_1297 +0.5 1.3 hypothetical protein compare
Echvi_4222 +0.5 3.2 6-phosphogluconate dehydrogenase, decarboxylating compare
Echvi_1422 +0.5 2.5 hypothetical protein compare
Echvi_0797 +0.5 2.9 Uncharacterised protein family (UPF0158). compare
Echvi_0619 +0.5 3.2 excinuclease ABC, C subunit compare
Echvi_1580 +0.5 3.2 Choline dehydrogenase and related flavoproteins compare
Echvi_2779 +0.5 1.3 hypothetical protein compare
Echvi_1204 +0.5 2.7 Transcriptional regulator compare
Echvi_1921 +0.5 2.7 Predicted dehydrogenases and related proteins compare
Echvi_3973 +0.5 1.8 hypothetical protein compare
Echvi_4082 +0.5 1.1 Holliday junction DNA helicase, RuvA subunit compare
Echvi_2594 +0.5 2.8 methyltransferase, FkbM family compare
Echvi_2838 +0.5 1.4 Cytosine/adenosine deaminases compare
Echvi_4553 +0.5 1.4 hypothetical protein compare
Echvi_1495 +0.5 2.9 hypothetical protein compare
Echvi_3027 +0.5 1.4 Uncharacterized protein conserved in bacteria compare
Echvi_4085 +0.5 1.2 hypothetical protein compare
Echvi_4248 +0.5 0.7 hypothetical protein compare
Echvi_3976 +0.5 2.3 hypothetical protein compare
Echvi_0852 +0.5 4.4 Parvulin-like peptidyl-prolyl isomerase compare
Echvi_0617 +0.5 4.4 hypothetical protein compare
Echvi_3802 +0.5 3.8 Periplasmic protein involved in polysaccharide export compare
Echvi_2266 +0.5 4.3 Alanine dehydrogenase compare
Echvi_1752 +0.5 1.6 hypothetical protein compare
Echvi_1108 +0.5 3.6 hypothetical protein compare
Echvi_4244 +0.5 1.6 hypothetical protein compare
Echvi_0799 +0.5 2.9 Uncharacterized conserved protein compare
Echvi_2068 +0.5 2.8 hypothetical protein compare
Echvi_2833 +0.5 1.7 L-serine dehydratase, iron-sulfur-dependent, beta subunit compare
Echvi_1355 +0.5 1.7 Bacteroides conjugative transposon TraM protein compare
Echvi_2049 +0.5 2.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Echvi_0514 +0.5 2.6 Uncharacterized membrane protein compare
Echvi_1264 +0.5 1.1 hypothetical protein compare
Echvi_0198 +0.5 2.5 Coenzyme F390 synthetase compare
Echvi_1142 +0.5 3.8 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Echvi_0655 +0.5 3.3 hypothetical protein compare
Echvi_2407 +0.5 2.2 Protein of unknown function (DUF3050). compare
Echvi_0851 +0.5 1.8 Uncharacterized conserved protein compare
Echvi_3566 +0.5 2.2 Thiamine monophosphate synthase compare
Echvi_2330 +0.5 1.2 hypothetical protein compare
Echvi_1203 +0.5 2.2 Predicted membrane protein compare
Echvi_2889 +0.5 2.0 FixH. compare
Echvi_0817 +0.5 1.2 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Citrulline in Echinicola vietnamensis KMM 6221, DSM 17526

For nitrogen source L-Citrulline across organisms