Experiment set3IT044 for Pseudomonas simiae WCS417

Compare to:

LB with 2-Furfuraldehyde 0.03 vol%

200 most important genes:

  gene name fitness t score description  
PS417_27800 -3.7 -9.3 exodeoxyribonuclease III compare
PS417_26990 -3.3 -2.5 RNA pyrophosphohydrolase compare
PS417_23770 -2.8 -4.2 exodeoxyribonuclease V subunit alpha compare
PS417_26530 -2.5 -2.9 hypothetical protein compare
PS417_22690 -2.2 -7.4 phosphogluconate dehydratase compare
PS417_01920 -2.2 -3.2 ATP-dependent protease subunit HslV compare
PS417_22620 -2.2 -9.0 pyruvate kinase compare
PS417_23375 -2.0 -2.8 cytochrome C oxidase compare
PS417_03260 -2.0 -3.8 5S ribosomal RNA compare
PS417_18355 -1.9 -8.2 DNA-binding protein compare
PS417_06375 -1.9 -1.7 deoxycytidine triphosphate deaminase compare
PS417_27135 -1.9 -1.9 glutamine synthetase compare
PS417_20985 -1.9 -3.7 porin compare
PS417_14125 -1.9 -6.2 molybdenum ABC transporter ATP-binding protein compare
PS417_23950 -1.8 -3.3 polynucleotide phosphorylase/polyadenylase compare
PS417_01605 -1.7 -1.5 phosphoglycerate mutase compare
PS417_03855 -1.7 -8.9 NADH dehydrogenase conserved
PS417_03560 -1.5 -3.8 GTP-binding protein compare
PS417_08670 -1.4 -5.0 molybdopterin biosynthesis protein B compare
PS417_09035 -1.4 -3.4 hypothetical protein compare
PS417_23385 -1.4 -8.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_02485 -1.4 -3.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02555 -1.4 -9.3 exoribonuclease R compare
PS417_06680 -1.4 -8.3 nuclease PIN compare
PS417_07560 -1.3 -2.2 universal stress protein UspA compare
PS417_17215 -1.3 -5.4 peptidylprolyl isomerase compare
PS417_27610 -1.3 -6.1 hypothetical protein compare
PS417_01270 -1.3 -2.7 iron ABC transporter substrate-binding protein compare
PS417_23370 -1.2 -4.1 protoheme IX farnesyltransferase compare
PS417_27870 -1.2 -3.7 ATP-dependent DNA helicase RecG compare
PS417_14755 -1.2 -3.0 UV damage repair endonuclease UvdE compare
PS417_24155 -1.2 -2.3 ATP-binding protein compare
PS417_14115 -1.2 -6.3 molybdate ABC transporter substrate-binding protein compare
PS417_22445 -1.2 -4.5 ATP-dependent DNA helicase RuvB compare
PS417_21395 -1.2 -6.2 radical SAM protein compare
PS417_05815 -1.2 -4.3 recombinase RecA compare
PS417_08220 -1.1 -1.4 epimerase compare
PS417_01915 -1.1 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_09695 -1.1 -1.9 hydrolase compare
PS417_23390 -1.1 -4.5 ubiquinol oxidase subunit II compare
PS417_00650 -1.1 -1.0 LysR family transcriptional regulator compare
PS417_24265 -1.1 -4.8 ABC transporter ATP-binding protein compare
PS417_10985 -1.1 -1.4 NADH:flavin oxidoreductase compare
PS417_26335 -1.1 -3.3 BetI family transcriptional regulator compare
PS417_08125 -1.1 -1.5 prephenate dehydratase compare
PS417_13165 -1.1 -1.9 peroxidase compare
PS417_08380 -1.0 -6.2 ABC transporter ATP-binding protein compare
PS417_23095 -1.0 -1.4 exodeoxyribonuclease compare
PS417_27865 -1.0 -2.6 LysR family transcriptional regulator compare
PS417_00515 -1.0 -5.3 membrane protein compare
PS417_04650 -1.0 -1.9 D-alanine--D-alanine ligase compare
PS417_17155 -1.0 -2.1 cytochrome B561 compare
PS417_27640 -1.0 -1.8 TetR family transcriptional regulator compare
PS417_26605 -1.0 -2.0 malonate decarboxylase subunit beta compare
PS417_27245 -1.0 -4.3 aminotransferase DegT compare
PS417_04380 -1.0 -2.5 ABC transporter permease compare
PS417_14120 -1.0 -5.5 molybdenum ABC transporter permease compare
PS417_10885 -1.0 -6.2 Deoxyribose 1-dehydrogenase, beta subunit (from data) compare
PS417_03385 -1.0 -1.5 flavin reductase compare
PS417_28050 -1.0 -2.2 hypothetical protein compare
PS417_00220 -1.0 -1.6 hypothetical protein compare
PS417_27605 -1.0 -3.7 hypothetical protein compare
PS417_04375 -0.9 -2.9 ABC transporter ATP-binding protein compare
PS417_22695 -0.9 -6.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_08665 -0.9 -3.1 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_08540 -0.9 -2.8 RNA helicase compare
PS417_10880 -0.9 -4.5 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_24615 -0.9 -1.3 hypothetical protein compare
PS417_10480 -0.9 -1.7 glutathione S-transferase compare
PS417_19600 -0.9 -1.3 exonuclease compare
PS417_04875 -0.8 -1.5 molybdenum cofactor biosynthesis protein MoaE compare
PS417_13140 -0.8 -1.4 oxidoreductase compare
PS417_15895 -0.8 -1.8 iron dicitrate transport regulator FecR compare
PS417_27585 -0.8 -2.4 diaminopimelate epimerase compare
PS417_23915 -0.8 -3.4 pantoate--beta-alanine ligase compare
PS417_16535 -0.8 -3.3 NUDIX hydrolase compare
PS417_12855 -0.8 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12840 -0.8 -3.3 TetR family transcriptional regulator compare
PS417_08675 -0.8 -2.9 molybdenum cofactor biosynthesis protein MoaA compare
PS417_02720 -0.8 -1.2 TetR family transcriptional regulator compare
PS417_27425 -0.8 -5.3 exopolyphosphatase compare
PS417_00355 -0.8 -3.0 metal ABC transporter permease compare
PS417_16000 -0.8 -1.8 chemotaxis protein CheY compare
PS417_04865 -0.8 -1.7 molybdenum cofactor biosynthesis protein MoaC compare
PS417_02225 -0.8 -2.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_17780 -0.8 -1.1 Ais protein compare
PS417_19415 -0.8 -2.8 allantoinase compare
PS417_06540 -0.8 -1.6 membrane protein compare
PS417_16885 -0.8 -2.5 hypothetical protein compare
PS417_10890 -0.8 -2.9 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_23505 -0.8 -1.6 cell division protein DedD compare
PS417_00180 -0.8 -2.5 tryptophan synthase subunit alpha compare
PS417_24835 -0.8 -4.1 hypothetical protein compare
PS417_15030 -0.8 -1.3 short-chain dehydrogenase compare
PS417_18350 -0.8 -2.0 hypothetical protein compare
PS417_01620 -0.7 -3.2 preprotein translocase subunit SecB compare
PS417_06370 -0.7 -1.6 cold-shock protein compare
PS417_04590 -0.7 -3.6 methyltransferase compare
PS417_22990 -0.7 -1.2 iron dicitrate transport regulator FecR compare
PS417_16810 -0.7 -2.5 acyl-CoA dehydrogenase compare
PS417_02495 -0.7 -0.9 GTPase HflX compare
PS417_04385 -0.7 -3.4 organic solvent ABC transporter substrate-binding protein compare
PS417_10995 -0.7 -2.1 GntR family transcriptional regulator compare
PS417_05860 -0.7 -3.0 hypothetical protein compare
PS417_11830 -0.7 -1.6 membrane protein compare
PS417_28325 -0.7 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_00535 -0.7 -1.5 Holliday junction resolvase compare
PS417_21000 -0.7 -1.9 CrfX protein compare
PS417_00160 -0.7 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_20855 -0.7 -0.9 hypothetical protein compare
PS417_16555 -0.7 -1.2 cupin compare
PS417_18690 -0.7 -2.2 aromatic amino acid aminotransferase compare
PS417_21270 -0.7 -1.6 translation initiation factor 2 compare
PS417_07865 -0.7 -1.4 hypothetical protein compare
PS417_18540 -0.7 -2.5 colicin V production CvpA compare
PS417_04735 -0.7 -3.1 LysR family transcriptional regulator compare
PS417_27795 -0.7 -0.8 orotate phosphoribosyltransferase compare
PS417_17925 -0.7 -2.0 acyl-CoA dehydrogenase compare
PS417_06895 -0.6 -2.1 DNA-binding protein compare
PS417_14980 -0.6 -1.0 universal stress protein UspA compare
PS417_21495 -0.6 -2.0 lipoprotein compare
PS417_20775 -0.6 -2.5 coproporphyrinogen III oxidase compare
PS417_07410 -0.6 -1.9 hypothetical protein compare
PS417_06165 -0.6 -2.2 thiamine biosynthesis protein ThiF compare
PS417_15435 -0.6 -2.8 metallophosphatase compare
PS417_03145 -0.6 -1.3 acetyl-CoA acetyltransferase compare
PS417_16815 -0.6 -1.9 acyl-CoA dehydrogenase compare
PS417_09205 -0.6 -3.8 membrane protein compare
PS417_03685 -0.6 -1.5 FAD-dependent oxidoreductase compare
PS417_04115 -0.6 -1.9 alpha/beta hydrolase compare
PS417_21180 -0.6 -1.5 short-chain dehydrogenase compare
PS417_21490 -0.6 -3.0 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
PS417_24500 -0.6 -2.2 DEAD/DEAH box helicase compare
PS417_22380 -0.6 -1.9 hypothetical protein compare
PS417_06395 -0.6 -1.6 amino acid transporter compare
PS417_18310 -0.6 -1.1 hypothetical protein compare
PS417_21850 -0.6 -1.0 LysR family transcriptional regulator compare
PS417_14805 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_04835 -0.6 -1.9 hemolysin D compare
PS417_22520 -0.6 -1.2 histidine kinase compare
PS417_21430 -0.6 -1.3 3-oxoacyl-ACP synthase compare
PS417_23380 -0.6 -1.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_24345 -0.6 -2.2 ubiquinol oxidase subunit II compare
PS417_17900 -0.6 -1.3 transcriptional regulator compare
PS417_02805 -0.6 -1.1 urease subunit gamma compare
PS417_20520 -0.6 -1.2 3-phosphoglycerate kinase compare
PS417_00045 -0.6 -1.6 glycerol acyltransferase compare
PS417_27035 -0.6 -2.1 FAD-linked oxidase compare
PS417_26175 -0.6 -0.9 sarcosine oxidase subunit gamma compare
PS417_01855 -0.6 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_23045 -0.6 -2.0 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_12780 -0.6 -2.7 (Fe-S)-binding protein compare
PS417_14855 -0.6 -2.2 gluconolactonase compare
PS417_16715 -0.6 -1.1 DoxX family protein compare
PS417_15325 -0.6 -1.0 type VI secretion protein compare
PS417_07165 -0.6 -2.9 dihydrodipicolinate synthase compare
PS417_14915 -0.6 -1.4 host specificity protein compare
PS417_23360 -0.6 -0.8 hypothetical protein compare
PS417_06675 -0.6 -1.6 ATP-dependent helicase compare
PS417_06500 -0.6 -1.1 hypothetical protein compare
PS417_25915 -0.6 -1.2 carbon-nitrogen hydrolase compare
PS417_04390 -0.5 -2.0 toluene tolerance protein compare
PS417_01850 -0.5 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_15650 -0.5 -1.2 glutamine amidotransferase compare
PS417_08200 -0.5 -1.4 hypothetical protein compare
PS417_24905 -0.5 -2.9 DNA-binding protein compare
PS417_12400 -0.5 -1.7 oxidoreductase compare
PS417_19965 -0.5 -4.1 histidine kinase compare
PS417_28070 -0.5 -2.8 phosphate ABC transporter ATP-binding protein compare
PS417_19720 -0.5 -0.9 DNA-binding protein compare
PS417_06445 -0.5 -1.3 iron-siderophore ABC transporter permease compare
PS417_11965 -0.5 -1.8 GCN5 family acetyltransferase compare
PS417_07420 -0.5 -2.2 restriction endonuclease compare
PS417_02480 -0.5 -2.9 DNA mismatch repair protein compare
PS417_25270 -0.5 -1.8 NrdR family transcriptional regulator compare
PS417_06205 -0.5 -3.6 methionine aminopeptidase compare
PS417_24705 -0.5 -1.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_08090 -0.5 -1.1 3-oxoacyl-ACP reductase compare
PS417_13145 -0.5 -1.0 50S ribosomal protein L21 compare
PS417_07700 -0.5 -1.3 chromosome partitioning protein ParA compare
PS417_15510 -0.5 -0.5 hypothetical protein compare
PS417_17440 -0.5 -1.1 beta-lactamase compare
PS417_09200 -0.5 -1.6 ABC transporter compare
PS417_00585 -0.5 -2.1 CoA-transferase compare
PS417_10320 -0.5 -1.6 hypothetical protein compare
PS417_22050 -0.5 -3.1 ribonuclease BN compare
PS417_20170 -0.5 -1.5 hypothetical protein compare
PS417_28020 -0.5 -1.2 chorismate--pyruvate lyase compare
PS417_15465 -0.5 -1.5 carboxynorspermidine decarboxylase compare
PS417_17035 -0.5 -0.9 Cro/Cl family transcriptional regulator compare
PS417_03455 -0.5 -0.9 type III secretion protein compare
PS417_26155 -0.5 -1.8 hypothetical protein compare
PS417_16185 -0.5 -1.2 hypothetical protein compare
PS417_19305 -0.5 -2.0 acireductone dioxygenase compare
PS417_23625 -0.5 -1.4 LysR family transcriptional regulator compare
PS417_13885 -0.5 -1.6 chemotaxis protein CheY compare
PS417_19675 -0.5 -2.3 chemotaxis protein CheY compare
PS417_19955 -0.5 -1.1 hypothetical protein compare
PS417_27125 -0.5 -3.3 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_06770 -0.5 -2.3 multidrug transporter compare


Specific Phenotypes

For 4 genes in this experiment

For stress 2-Furfuraldehyde in Pseudomonas simiae WCS417

For stress 2-Furfuraldehyde across organisms