Experiment set3IT044 for Echinicola vietnamensis KMM 6221, DSM 17526
L-tyrosine disodium salt nitrogen source
Group: nitrogen sourceMedia: DinoMM_noNitrogen_HighNutrient_GlucoseC + L-tyrosine disodium salt (20 mM), pH=7
Culturing: Cola_ML5, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.8 generations
By: Adam on 8-May-17
Media components: 20 g/L Sea salts, 0.1 g/L Potassium phosphate monobasic, 20 mM D-Glucose, Wolfe's mineral mix (0.03 g/L Magnesium Sulfate Heptahydrate, 0.015 g/L Nitrilotriacetic acid, 0.01 g/L Sodium Chloride, 0.005 g/L Manganese (II) sulfate monohydrate, 0.001 g/L Cobalt chloride hexahydrate, 0.001 g/L Zinc sulfate heptahydrate, 0.001 g/L Calcium chloride dihydrate, 0.001 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L Nickel (II) chloride hexahydrate, 0.0002 g/L Aluminum potassium sulfate dodecahydrate, 0.0001 g/L Copper (II) sulfate pentahydrate, 0.0001 g/L Boric Acid, 0.0001 g/L Sodium Molybdate Dihydrate, 0.003 mg/L Sodium selenite pentahydrate), Wolfe's vitamin mix (0.1 mg/L Pyridoxine HCl, 0.05 mg/L 4-Aminobenzoic acid, 0.05 mg/L Lipoic acid, 0.05 mg/L Nicotinic Acid, 0.05 mg/L Riboflavin, 0.05 mg/L Thiamine HCl, 0.05 mg/L calcium pantothenate, 0.02 mg/L biotin, 0.02 mg/L Folic Acid, 0.001 mg/L Cyanocobalamin)
Growth plate: 1717 D1
Specific Phenotypes
For 82 genes in this experiment
For nitrogen source L-tyrosine disodium salt in Echinicola vietnamensis KMM 6221, DSM 17526
For nitrogen source L-tyrosine disodium salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Nucleotide sugars metabolism
- Biosynthesis of alkaloids derived from shikimate pathway
- Glycolysis / Gluconeogenesis
- Pentose and glucuronate interconversions
- Ubiquinone and menaquinone biosynthesis
- Tryptophan metabolism
- Starch and sucrose metabolism
- High-mannose type N-glycan biosynthesis
- Streptomycin biosynthesis
- Polyketide sugar unit biosynthesis
- Lipopolysaccharide biosynthesis
- Sphingolipid metabolism
- Carotenoid biosynthesis - General
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of plant hormones
- Fructose and mannose metabolism
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Purine metabolism
- Arginine and proline metabolism
- Histidine metabolism
- Tyrosine metabolism
- Benzoxazinone biosynthesis
- Aminophosphonate metabolism
- N-Glycan biosynthesis
- O-Glycan biosynthesis
- O-Mannosyl glycan biosynthesis
- Keratan sulfate biosynthesis
- Peptidoglycan biosynthesis
- Glycerolipid metabolism
- Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
- Glycerophospholipid metabolism
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- Naphthalene and anthracene degradation
- Thiamine metabolism
- Porphyrin and chlorophyll metabolism
- Zeatin biosynthesis
- Phenylpropanoid biosynthesis
- Flavone and flavonol biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Drug metabolism - other enzymes
- Biosynthesis of vancomycin group antibiotics
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: