Experiment set3IT044 for Agrobacterium fabrum C58

Compare to:

L-Ornithine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1446 -5.5 -3.8 two component response regulator compare
Atu1750 -4.8 -4.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu3707 -4.6 -6.2 phosphoserine aminotransferase compare
Atu2040 -4.3 -8.6 phosphoserine phosphatase compare
Atu3469 -4.0 -4.7 phosphoglyceromutase compare
Atu0039 -3.9 -2.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu3706 -3.8 -10.9 D-3-phosphoglycerate dehydrogenase compare
Atu0400 -3.7 -6.4 orotate phosphoribosyltransferase compare
Atu0679 -3.7 -8.1 ATP phosphoribosyltransferase compare
Atu0332 -3.5 -12.0 RNA polymerase sigma-54 factor compare
Atu0035 -3.5 -10.6 phosphoenolpyruvate carboxykinase compare
Atu3730 -3.4 -2.1 hypothetical protein compare
Atu0678 -3.4 -7.9 histidyl-tRNA synthetase compare
Atu0043 -3.4 -4.0 imidazoleglycerol-phosphate dehydratase compare
Atu1030 -3.3 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0486 -3.2 -7.5 dihydroorotate dehydrogenase compare
Atu0537 -3.2 -8.7 histidinol dehydrogenase compare
Atu1359 -3.1 -1.8 dnaK deletion suppressor protein compare
Atu0099 -3.1 -7.7 prephenate dehydratase compare
Atu2747 -3.0 -13.1 hypothetical protein compare
Atu1445 -3.0 -7.1 two component sensor kinase compare
Atu0041 -2.9 -3.4 glutamine amidotransferase compare
Atu1688 -2.9 -8.0 indole-3-glycerol-phosphate synthase compare
Atu0399 -2.9 -8.4 dihydroorotase compare
Atu0654 -2.8 -9.9 transcriptional regulator, LysR family compare
Atu2036 -2.8 -16.0 acetolactate synthase III, large subunit compare
Atu2650 -2.7 -14.4 glycerol-3-phosphate dehydrogenase compare
Atu1687 -2.7 -9.3 anthranilate phosphoribosyltransferase compare
Atu0298 -2.6 -5.9 orotidine 5 compare
Atu3739 -2.6 -3.8 phosphoglycerate kinase compare
Atu8135 -2.6 -9.0 hypothetical protein compare
Atu2289 -2.6 -16.3 anthranilate synthase component I and II compare
Atu2783 -2.4 -7.5 acetyltransferase compare
Atu1845 -2.4 -6.4 phosphoribosylformylglycinamidine synthase I compare
Atu1844 -2.3 -4.2 Phosphoribosylformylglycinamidine synthetase compare
Atu5163 -2.3 -3.4 type IV secretion protein AvhB2 compare
Atu3300 -2.2 -12.6 aminotransferase compare
Atu0017 -2.2 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1850 -2.2 -4.4 phosphoribosylformylglycinamidine synthetase II compare
Atu3754 -2.1 -7.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu5007 -2.0 -4.9 santhopine-responsive transcriptional repressor compare
Atu4505 -2.0 -12.2 LacI family transcriptional regulator compare
Atu3740 -2.0 -10.1 fructose bisphosphate aldolase compare
Atu3885 -1.9 -8.2 inositol monophosphatase compare
Atu2396 -1.9 -4.5 urease accessory protein compare
Atu1075 -1.9 -6.8 amidophosphoribosyltransferase compare
Atu2790 -1.9 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu2207 -1.9 -3.2 two component sensor kinase compare
Atu2718 -1.8 -6.8 homoserine O-succinyltransferase compare
Atu2155 -1.8 -14.1 methionine synthase compare
Atu6098 -1.8 -0.7 transcriptional regulator, HTH family compare
Atu2401 -1.7 -11.7 urease alpha subunit compare
Atu2397 -1.7 -11.3 urease accessory protein compare
Atu3794 -1.7 -8.3 FadR family transcriptional regulator compare
Atu1140 -1.7 -3.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2408 -1.6 -11.1 urease accessory protein compare
Atu2264 -1.6 -10.5 2-isopropylmalate synthase compare
Atu0432 -1.6 -6.2 O-succinylhomoserine sulfhydrylase compare
Atu0647 -1.5 -6.4 phosphoribosylamine--glycine ligase compare
Atu2791 -1.5 -8.0 3-isopropylmalate dehydrogenase compare
Atu2709 -1.5 -11.1 3-isopropylmalate dehydratase, large subunit compare
Atu0038 -1.5 -4.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4317 -1.4 -3.8 TetR family transcriptional regulator compare
Atu1570 -1.4 -1.2 hypothetical protein compare
Atu1307 -1.3 -4.8 dihydroorotase compare
Atu4610 -1.3 -9.8 sugar nucleotide epimerase/dehydratase compare
Atu0031 -1.3 -1.5 PTS system, IIA component compare
Atu3008 -1.3 -1.5 hypothetical protein compare
Atu1205 -1.3 -7.7 threonine dehydratase compare
Atu1308 -1.3 -5.7 aspartate carbamoyl transferase catalytic subunit compare
Atu3301 -1.3 -5.5 short-chain alcohol dehydrogenase compare
Atu3755 -1.3 -4.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1588 -1.3 -6.3 homoserine dehydrogenase compare
Atu2407 -1.3 -2.9 urease gamma subunit compare
Atu4711 -1.2 -6.3 two component sensor kinase compare
Atu2758 -1.2 -6.6 ammonium transporter compare
Atu1141 -1.2 -3.6 Phosphoribosylglycinamide synthetase compare
Atu0421 -1.2 -1.4 ABC transporter, membrane spanning protein compare
Atu3291 -1.2 -4.9 Lpr family transcriptional regulator compare
Atu3012 -1.2 -1.9 hypothetical protein compare
Atu2398 -1.1 -4.5 urease accessory protein compare
Atu5430 -1.1 -1.0 hypothetical protein compare
Atu2200 -1.1 -2.1 cold shock protein compare
Atu5057 -1.1 -1.2 hypothetical protein compare
Atu4217 -1.1 -1.8 TetR family transcriptional regulator compare
Atu2800 -1.1 -2.8 precorrin-3B C17-methyltransferase compare
Atu8034 -1.0 -4.7 hypothetical protein compare
Atu5517 -1.0 -1.3 hypothetical protein compare
Atu2057 -1.0 -2.7 DNA helicase II compare
Atu3009 -1.0 -1.6 exopolysaccharide production protein compare
Atu0189 -1.0 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu1774 -1.0 -5.3 ABC transporter, substrate binding protein (peptide) compare
Atu3293 -1.0 -5.9 D-amino acid dehydrogenase small subunit compare
Atu2376 -1.0 -1.2 hypothetical protein compare
Atu4007 -1.0 -6.7 arginase compare
Atu2123 -1.0 -3.6 methylenetetrahydrofolate reductase compare
Atu4157 -1.0 -8.6 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
Atu1444 -0.9 -3.1 nitrogen regulation protein compare
Atu0026 -0.9 -1.0 hypothetical protein compare
Atu0977 -0.9 -3.3 serine protease DO-like protease compare
Atu3731 -0.9 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu0361 -0.9 -2.2 transcriptional regulator compare
Atu8177 -0.9 -2.9 hypothetical protein compare
Atu0188 -0.9 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu3120 -0.9 -1.7 hypothetical protein compare
Atu3292 -0.8 -6.5 alanine racemase compare
Atu2404 -0.8 -2.3 hypothetical protein compare
Atu2812 -0.8 -2.7 hypothetical protein compare
Atu5010 -0.8 -1.3 hypothetical protein compare
Atu1714 -0.8 -1.5 exonuclease III compare
Atu0846 -0.8 -3.1 transcriptional regulator, MarR family compare
Atu5527 -0.8 -3.2 NADH-dependent FMN reductase compare
Atu3697 -0.8 -3.2 ATP-dependent protease LA 2 compare
Atu0606 -0.8 -1.9 hypothetical protein compare
Atu1456 -0.8 -4.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2728 -0.8 -3.0 beta (1-->2) glucan export ATP-binding protein compare
Atu4873 -0.7 -4.8 TetR family transcriptional regulator compare
Atu3496 -0.7 -2.2 hypothetical protein compare
Atu0837 -0.7 -3.0 transcriptional regulator, MarR family compare
Atu0107 -0.7 -1.4 hypothetical protein compare
Atu4618 -0.7 -5.2 dTDP-rhamnose-3,5-epimerase compare
Atu2209 -0.7 -2.4 pyrroline-5-carboxylate reductase compare
Atu8018 -0.7 -0.7 hypothetical protein compare
Atu1780 -0.7 -5.0 ATP-dependent DNA helicase compare
Atu0690 -0.7 -1.1 hypothetical protein compare
Atu0029 -0.7 -3.0 S-adenosylhomocysteine hydrolase compare
Atu0677 -0.7 -1.3 hypothetical protein compare
Atu5026 -0.7 -2.0 hypothetical protein compare
Atu5035 -0.7 -2.0 hypothetical protein compare
Atu2183 -0.7 -4.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0861 -0.7 -1.6 hypothetical protein compare
Atu8203 -0.7 -1.3 hypothetical protein compare
Atu2634 -0.7 -1.4 hypothetical protein compare
Atu1457 -0.6 -0.9 hypothetical protein compare
Atu2640 -0.6 -2.7 hypothetical protein compare
Atu1110 -0.6 -1.0 cytosol aminopeptidase compare
Atu6197 -0.6 -1.5 agrocinopine phosphodiesterase compare
Atu5511 -0.6 -0.9 hypothetical protein compare
Atu4887 -0.6 -2.9 hypothetical protein compare
Atu4702 -0.6 -3.6 GntR family transcriptional regulator compare
Atu6125 -0.6 -1.4 conjugative transfer protein, Dtr system compare
Atu1339 -0.6 -1.2 ribonuclease E compare
Atu0680 -0.6 -2.5 hypothetical protein compare
Atu4018 -0.6 -4.3 two component sensor kinase compare
Atu5142 -0.6 -0.5 hypothetical protein compare
Atu5162 -0.6 -2.5 type IV secretion protein AvhB1 compare
Atu5538 -0.6 -1.9 hypothetical protein compare
Atu1355 -0.6 -2.9 hypothetical protein compare
Atu3353 -0.6 -4.4 mannose-1-phosphate guanylyltransferase compare
Atu1354 -0.6 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2802 -0.6 -2.6 precorrin-8X methylmutase compare
Atu2787 -0.6 -0.7 hypothetical protein compare
Atu2771 -0.6 -3.4 bacterioferritin compare
Atu2416 -0.6 -4.5 glutamine synthetase compare
Atu4144 -0.6 -1.0 hypothetical protein compare
Atu2757 -0.6 -2.3 nitrogen regulatory protein PII compare
Atu4879 -0.6 -3.9 hypothetical protein compare
Atu3015 -0.6 -2.2 hypothetical protein compare
Atu4290 -0.6 -1.5 hypothetical protein compare
Atu4166 -0.6 -2.0 UDP-glucose 4-epimerase compare
Atu4884 -0.6 -1.9 hypothetical protein compare
Atu0346 -0.6 -1.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4866 -0.6 -4.1 hypothetical protein compare
Atu3020 -0.6 -3.3 GntR family transcriptional regulator compare
Atu4773 -0.6 -0.8 two component response regulator compare
Atu1439 -0.6 -1.2 hypothetical protein compare
Atu2777 -0.6 -2.8 hypothetical protein compare
Atu2125 -0.5 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu0845 -0.5 -1.7 hypothetical protein compare
Atu0566 -0.5 -1.1 hypothetical protein compare
Atu0190 -0.5 -2.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3613 -0.5 -2.8 hypothetical protein compare
Atu1510 -0.5 -2.2 hypothetical protein compare
Atu4498 -0.5 -3.0 hypothetical protein compare
Atu5045 -0.5 -0.6 hypothetical protein compare
Atu2205 -0.5 -2.6 transcriptional regulator, MarR family compare
Atu2808 -0.5 -2.3 cobyric acid synthase compare
Atu3075 -0.5 -3.0 TetR family transcriptional regulator compare
Atu0660 -0.5 -2.5 hydrolase compare
Atu2786 -0.5 -2.0 hypothetical protein compare
Atu4867 -0.5 -4.2 hypothetical protein compare
Atu1789 -0.5 -2.4 lipoprotein compare
Atu1369 -0.5 -2.3 HIT family protein compare
Atu1449 -0.5 -2.1 potassium uptake protein compare
Atu0040 -0.5 -0.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0723 -0.5 -0.8 FAD dependent oxidoreductase compare
Atu4617 -0.5 -2.8 dTDP-D-glucose-4,6-dehydratase compare
Atu3036 -0.5 -3.0 dipeptide ABC transporter permease compare
Atu1770 -0.5 -3.0 glutamine synthetase compare
Atu3665 -0.5 -2.6 short-chain dehydrogenase compare
Atu2442 -0.5 -1.2 hypothetical protein compare
Atu6195 -0.5 -0.7 conserved hypothetical protein compare
Atu1707 -0.5 -2.6 hypothetical protein compare
Atu3669 -0.5 -3.7 siderophore biosynthesis protein compare
Atu1175 -0.5 -0.8 hypothetical protein compare
Atu2815 -0.5 -3.0 hypothetical protein compare
Atu0357 -0.5 -2.8 phosphate starvation inducible protein compare
Atu1708 -0.5 -2.2 hypothetical protein compare
Atu1621 -0.5 -3.4 hypothetical protein compare
Atu3024 -0.5 -3.8 sugar ABC transporter permease compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source L-Ornithine in Agrobacterium fabrum C58

For nitrogen source L-Ornithine across organisms