Experiment set3IT044 for Agrobacterium fabrum C58

Compare to:

L-Ornithine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Atu5121 +2.8 20.8 two component response regulator compare
Atu0141 +2.2 3.3 cytochrome O ubiquinol oxidase subunit I compare
Atu6019 +2.2 9.2 D-nopaline dehydrogenase compare
Atu0142 +1.8 3.4 cytochrome o ubiquinol oxidase subunit II compare
Atu0769 +1.7 5.4 protoheme IX farnesyltransferase compare
Atu1580 +1.3 9.0 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu1577 +1.3 6.4 ABC transporter, substrate binding protein (amino acid) compare
Atu1578 +1.3 8.2 ABC transporter, membrane spanning protein (amino acid) compare
Atu1579 +1.2 8.9 ABC transporter, membrane spanning protein (amino acid) compare
Atu1364 +1.1 4.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu5501 +1.0 2.2 hypothetical protein compare
Atu6020 +1.0 3.5 conserved hypothetical protein compare
Atu6138 +1.0 3.3 Repressor of the acc and arc operons compare
Atu1566 +1.0 1.5 hypothetical protein compare
Atu5115 +0.9 1.0 hypothetical protein compare
Atu5122 +0.9 5.0 3-ketoacyl-ACP reductase compare
Atu6018 +0.9 4.7 arginase compare
Atu0435 +0.8 1.7 tRNA-Gly compare
Atu1847 +0.8 2.3 hypothetical protein compare
Atu1818 +0.8 3.3 hypothetical protein compare
Atu1344 +0.8 1.3 hypothetical protein compare
Atu1213 +0.8 2.7 hypothetical protein compare
Atu3712 +0.8 1.6 hypothetical protein compare
Atu6181 +0.8 3.0 virA/G regulated topoisomerase compare
Atu2582 +0.8 4.7 UDP-glucose/GDP-mannose dehydrogenase compare
Atu6029 +0.7 5.0 transcriptional regulator, LysR family for nopaline metabolism compare
Atu6160 +0.7 3.3 conserved hypothetical protein compare
Atu2662 +0.7 1.5 acetyltransferase compare
Atu5164 +0.7 0.7 type IV secretion protein AvhB3 compare
Atu0886 +0.7 1.3 hypothetical protein compare
Atu1470 +0.7 1.4 Camphor resistance protein compare
Atu2657 +0.7 1.5 hypothetical protein compare
Atu5513 +0.7 1.0 cold shock protein compare
Atu2620 +0.7 1.4 hypothetical protein compare
Atu0572 +0.7 2.6 hypothetical protein compare
Atu5540 +0.7 0.6 hypothetical protein compare
Atu5144 +0.7 2.4 putative peptidase compare
Atu0434 +0.7 1.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4139 +0.7 2.9 hypothetical protein compare
Atu2590 +0.7 4.0 hypothetical protein compare
Atu1219 +0.6 1.0 hypothetical protein compare
Atu0049 +0.6 2.1 hypothetical protein compare
Atu3183 +0.6 1.1 hypothetical protein compare
Atu6021 +0.6 3.7 D-nopaline dehydrogenase compare
Atu8055 +0.6 1.7 hypothetical protein compare
Atu1329 +0.6 2.6 leucyl/phenylalanyl-tRNA-protein transferase compare
Atu2406 +0.6 2.2 hypothetical protein compare
Atu3653 +0.6 4.0 hypothetical protein compare
Atu0280 +0.6 1.1 hypothetical protein compare
Atu0105 +0.6 2.6 hypothetical protein compare
Atu0470 +0.6 1.5 hypothetical protein compare
Atu1685 +0.6 1.0 hypothetical protein compare
Atu1501 +0.6 2.4 hypothetical protein compare
Atu8053 +0.6 1.5 hypothetical protein compare
Atu2324 +0.6 2.0 ureidoglycolate hydrolase compare
Atu4148 +0.6 3.5 UDP-glucuronic acid epimerase compare
Atu4076 +0.6 3.6 glucose-1-phosphate adenylyltransferase compare
Atu1815 +0.6 3.9 HlyD family secretion protein compare
Atu5119 +0.6 3.6 two component response regulator compare
Atu3624 +0.6 2.9 stress induced morphogen compare
Atu0976 +0.6 1.4 cycL protein compare
Atu3632 +0.6 2.6 hypothetical protein compare
Atu3906 +0.6 4.1 nitrate ABC transporter ATPase compare
Atu4671 +0.5 2.5 response regulator compare
Atu5123 +0.5 3.8 acetolactate synthase catalytic subunit compare
Atu0546 +0.5 4.0 flagellar biosynthetic protein compare
Atu0477 +0.5 0.9 hypothetical protein compare
Atu2585 +0.5 3.2 hypothetical protein compare
Atu0999 +0.5 2.8 magnesium transport protein compare
Atu1892 +0.5 1.7 hypothetical protein compare
Atu3182 +0.5 2.5 hypothetical protein compare
Atu1189 +0.5 2.2 hypothetical protein compare
Atu5494 +0.5 1.9 hypothetical protein compare
Atu0812 +0.5 1.3 hypothetical protein compare
Atu0795 +0.5 0.9 hypothetical protein compare
Atu1007 +0.5 1.2 hypothetical protein compare
Atu2591 +0.5 2.9 glucosyltransferase compare
Atu4075 +0.5 2.8 glycogen synthase compare
Atu5114 +0.5 1.5 hypothetical protein compare
Atu1871 +0.5 2.8 glutathione S-transferase compare
Atu3783 +0.5 4.1 glutamate synthase subunit beta compare
Atu1190 +0.5 1.6 hypothetical protein compare
Atu5170 +0.5 2.6 type IV secretion protein AvhB9 compare
Atu0612 +0.5 0.8 ABC transporter, membrane spanning protein compare
Atu3908 +0.5 3.9 GntR family transcriptional regulator compare
Atu5444 +0.5 1.5 short-chain dehydrogenase compare
Atu0030 +0.5 1.0 phosphocarrier protein HPr compare
Atu5427 +0.5 1.0 hypothetical protein compare
Atu5157 +0.5 0.9 hypothetical protein compare
Atu8138 +0.5 1.1 hypothetical protein compare
Atu1817 +0.5 3.8 hypothetical protein compare
Atu2339 +0.5 3.3 hypothetical protein compare
Atu1842 +0.5 3.0 hypothetical protein compare
Atu6055 +0.5 2.5 transcriptional regulator, LysR family compare
Atu5440 +0.5 1.7 hypothetical protein compare
Atu6106 +0.5 1.3 conserved hypothetical protein compare
Atu6121 +0.5 2.1 conserved hypothetical protein compare
Atu0319 +0.5 0.9 ubiquinone biosynthesis protein compare
Atu4187 +0.5 1.0 tRNA-Met compare
Atu1836 +0.5 1.4 hypothetical protein compare
Atu0549 +0.5 2.3 hypothetical protein compare
Atu0730 +0.5 1.7 hypothetical protein compare
Atu0578 +0.5 1.7 FlbT post-transcriptional regulator of flagellin compare
Atu3727 +0.5 2.8 hypothetical protein compare
Atu1816 +0.5 3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu8012 +0.5 0.9 hypothetical protein compare
Atu2338 +0.5 3.7 hypothetical protein compare
Atu6017 +0.5 2.5 NAD/NADP octopine/nopaline dehydrogenase compare
Atu2457 +0.5 2.6 hypothetical protein compare
Atu0984 +0.4 3.5 aminopeptidase N compare
Atu8118 +0.4 2.6 putative universal stress protein compare
Atu6036 +0.4 0.4 entry-exclusion protein compare
Atu2491 +0.4 1.6 hypothetical protein compare
Atu1291 +0.4 1.4 hypothetical protein compare
Atu8023 +0.4 1.7 hypothetical protein compare
Atu1968 +0.4 1.2 hypothetical protein compare
Atu3784 +0.4 3.9 glutamate synthase large subunit compare
Atu2583 +0.4 3.1 glycosyltransferase compare
Atu4674 +0.4 3.6 GntR family transcriptional regulator compare
Atu1879 +0.4 3.3 ABC transporter, substrate binding protein (amino acid) compare
Atu2584 +0.4 2.0 hypothetical protein compare
Atu0085 +0.4 1.3 tRNA pseudouridine 55 synthase compare
Atu1127 +0.4 1.2 molybdopterin converting factor small subunit compare
Atu2486 +0.4 2.6 cardiolipin synthase compare
Atu6032 +0.4 2.3 conjugal transfer protein compare
Atu3642 +0.4 3.1 vgrG protein compare
Atu1286 +0.4 1.9 hypothetical protein compare
Atu1333 +0.4 1.3 outer membrane protein compare
Atu0943 +0.4 1.1 hypothetical protein compare
Atu6169 +0.4 2.3 component of type IV secretion system compare
Atu6109 +0.4 1.4 conserved hypothetical protein compare
Atu1019 +0.4 0.8 hypothetical protein compare
Atu3319 +0.4 2.9 hypothetical protein compare
Atu3428 +0.4 2.4 hypothetical protein compare
Atu6156 +0.4 1.3 virA/G regulated gene compare
Atu1911 +0.4 2.7 hypothetical protein compare
Atu0273 +0.4 2.1 regulator protein pecM compare
Atu5118 +0.4 2.4 hypothetical protein compare
Atu6141 +0.4 2.4 ABC transporter, nucleotide binding/ATPase protein (agrocinopine) compare
Atu2067 +0.4 0.6 hypothetical protein compare
Atu5188 +0.4 2.1 zinc-binding dehydrogenase compare
Atu0564 +0.4 2.7 flagellar biosynthetic protein compare
Atu3468 +0.4 0.7 hypothetical protein compare
Atu3910 +0.4 2.6 LamB/YcsF family protein compare
Atu2484 +0.4 0.8 hypothetical protein compare
Atu8130 +0.4 3.0 hypothetical protein compare
Atu1323 +0.4 1.5 hypothetical protein compare
Atu8099 +0.4 0.8 hypothetical protein compare
Atu0115 +0.4 0.6 hypothetical protein compare
Atu8133 +0.4 1.4 hypothetical protein compare
Atu1258 +0.4 1.7 ATP-dependent Clp protease, proteolytic subunit compare
Atu1881 +0.4 2.7 ABC transporter, membrane spanning protein (amino acid) compare
Atu0523 +0.4 2.7 flagellar M-ring protein compare
Atu6086 +0.4 1.7 ABC transporter, membrane spanning protein (nitrate/sulfonate) compare
Atu0630 +0.4 1.0 hypothetical protein compare
Atu1906 +0.4 1.7 ABC transporter, membrane spanning protein compare
Atu1835 +0.4 1.2 hypothetical protein compare
Atu2282 +0.4 2.0 thymidine kinase compare
Atu1830 +0.4 1.8 bacterioferritin comigratory protein compare
Atu0554 +0.4 2.1 flagellar basal-body rod protein compare
Atu4108 +0.4 3.0 ribonuclease D compare
Atu5037 +0.4 1.9 hypothetical protein compare
Atu0725 +0.4 1.9 hypothetical protein compare
Atu2104 +0.4 1.6 hypothetical protein compare
Atu5101 +0.4 1.3 hypothetical protein compare
Atu8153 +0.4 2.0 hypothetical protein compare
Atu8060 +0.4 1.6 hypothetical protein compare
Atu1872 +0.4 1.6 hypothetical protein compare
Atu3815 +0.4 2.3 GntR family transcriptional regulator compare
Atu0940 +0.4 0.9 PemK protein compare
Atu2333 +0.4 1.8 ATP-dependent RNA helicase compare
Atu0640 +0.4 0.7 hypothetical protein compare
Atu2592 +0.4 2.1 hypothetical protein compare
Atu3302 +0.4 2.7 cellulose biosynthesis protein compare
Atu8040 +0.4 1.8 hypothetical protein compare
Atu0684 +0.4 1.6 hypothetical protein compare
Atu5046 +0.4 1.1 hypothetical protein compare
Atu0230 +0.4 0.9 hypothetical protein compare
Atu5428 +0.4 1.4 DNA-damage-inducible protein F compare
Atu3615 +0.4 2.0 hypothetical protein compare
Atu3627 +0.4 1.8 hypothetical protein compare
Atu1475 +0.4 1.4 hypothetical protein compare
Atu0570 +0.4 2.6 Chemotaxis protein compare
Atu0251 +0.4 2.8 hypothetical protein compare
Atu1834 +0.4 2.6 mutT like protein compare
Atu3226 +0.4 2.0 GntR family transcriptional regulator compare
Atu2041 +0.4 1.1 acetyltransferase compare
Atu5075 +0.4 1.8 GntR family transcriptional regulator compare
Atu2746 +0.3 1.2 hypothetical protein compare
Atu0557 +0.3 2.5 flagellum-specific ATP synthase compare
Atu1880 +0.3 2.0 ABC transporter, membrane spanning protein (amino acid) compare
Atu4023 +0.3 2.1 ferrichrome ABC transporter substrate-binding protein compare
Atu0495 +0.3 1.6 hypothetical protein compare
Atu0579 +0.3 2.2 hook formation protein compare
Atu8143 +0.3 1.3 hypothetical protein compare
Atu2343 +0.3 1.1 acetyltransferase compare
Atu0545 +0.3 2.1 flagella associated protein compare
Atu5112 +0.3 1.2 hypothetical protein compare
Atu0368 +0.3 1.5 tRNA pseudouridine synthase I compare
Atu1121 +0.3 1.7 lignin degradation protein compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source L-Ornithine in Agrobacterium fabrum C58

For nitrogen source L-Ornithine across organisms