Experiment set3IT043 for Pseudomonas simiae WCS417

Compare to:

LB with methylglyoxal 0.032 vol%

200 most important genes:

  gene name fitness t score description  
PS417_14035 -6.8 -8.9 lactoylglutathione lyase conserved
PS417_16480 -5.9 -7.8 recombination factor protein RarA conserved
PS417_27870 -5.5 -2.5 ATP-dependent DNA helicase RecG compare
PS417_05815 -5.2 -3.5 recombinase RecA compare
PS417_02720 -5.0 -0.9 TetR family transcriptional regulator compare
PS417_18425 -5.0 -0.9 sporulation protein compare
PS417_02555 -4.9 -17.0 exoribonuclease R compare
PS417_12220 -4.8 -3.2 hydroxyacylglutathione hydrolase compare
PS417_28070 -4.8 -7.3 phosphate ABC transporter ATP-binding protein compare
PS417_09235 -4.7 -0.8 molecular chaperone compare
PS417_23900 -4.7 -11.7 poly(A) polymerase compare
PS417_06330 -4.4 -2.6 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_27300 -4.2 -0.7 cell division protein ZapA compare
PS417_14590 -4.1 -1.7 LysR family transcriptional regulator compare
PS417_06510 -4.0 -6.3 ATP-dependent DNA helicase DinG conserved
PS417_04375 -4.0 -3.2 ABC transporter ATP-binding protein compare
PS417_22445 -3.9 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_26900 -3.9 -1.3 L-cystine transporter tcyP compare
PS417_23775 -3.9 -1.8 exodeoxyribonuclease V subunit beta compare
PS417_27810 -3.7 -7.5 ribonuclease PH compare
PS417_23770 -3.7 -2.0 exodeoxyribonuclease V subunit alpha compare
PS417_03380 -3.5 -0.8 hypothetical protein compare
PS417_22175 -3.4 -1.2 amino acid transporter LysE compare
PS417_27800 -3.4 -6.8 exodeoxyribonuclease III compare
PS417_04380 -3.4 -1.7 ABC transporter permease compare
PS417_15875 -3.3 -1.6 LuxR family transcriptional regulator compare
PS417_22450 -3.2 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_18435 -3.1 -2.2 hypothetical protein compare
PS417_21655 -3.0 -0.7 aspartate kinase compare
PS417_06540 -2.9 -1.8 membrane protein compare
PS417_20140 -2.9 -2.5 nucleoprotein/polynucleotide-associated enzyme compare
PS417_28220 -2.9 -1.7 LysR family transcriptional regulator compare
PS417_04390 -2.9 -4.0 toluene tolerance protein compare
PS417_08580 -2.9 -4.6 histidine kinase compare
PS417_03100 -2.9 -0.7 pilus assembly protein compare
PS417_05695 -2.8 -3.1 transcriptional regulator compare
PS417_28080 -2.7 -8.3 phosphate ABC transporter permease compare
PS417_06025 -2.7 -2.0 alpha/beta hydrolase compare
PS417_27865 -2.7 -2.9 LysR family transcriptional regulator compare
PS417_24230 -2.6 -7.4 ATP-dependent protease compare
PS417_27315 -2.6 -0.6 hypothetical protein compare
PS417_06780 -2.5 -2.5 TetR family transcriptional regulator compare
PS417_10095 -2.5 -1.5 hypothetical protein compare
PS417_22570 -2.4 -0.7 H-NS histone compare
PS417_11900 -2.4 -7.6 conjugal transfer protein TraR compare
PS417_17755 -2.4 -1.8 hypothetical protein compare
PS417_09245 -2.4 -1.1 recombinase RdgC compare
PS417_04915 -2.4 -1.4 glutamine ABC transporter ATP-binding protein compare
PS417_26815 -2.3 -1.6 peptidase M16 compare
PS417_08155 -2.3 -1.7 integration host factor subunit beta compare
PS417_27435 -2.3 -4.9 polyphosphate kinase compare
PS417_05365 -2.3 -1.3 FAD-binding protein compare
PS417_04305 -2.3 -0.7 aspartate ammonia-lyase compare
PS417_04385 -2.2 -3.9 organic solvent ABC transporter substrate-binding protein compare
PS417_24895 -2.2 -1.0 hypothetical protein compare
PS417_06325 -2.2 -3.2 LysR family transcriptional regulator compare
PS417_24115 -2.2 -1.6 hypothetical protein compare
PS417_20575 -2.2 -8.5 ATP-dependent helicase HrpA conserved
PS417_21625 -2.1 -0.8 DNA-binding protein compare
PS417_26990 -2.1 -0.8 RNA pyrophosphohydrolase compare
PS417_07875 -2.1 -0.7 hypothetical protein compare
PS417_27595 -2.1 -2.3 recombinase XerC compare
PS417_20775 -2.0 -3.7 coproporphyrinogen III oxidase compare
PS417_02385 -2.0 -1.0 esterase compare
PS417_21760 -2.0 -1.2 hypothetical protein compare
PS417_19095 -2.0 -1.4 hypothetical protein compare
PS417_28085 -2.0 -5.3 phosphate-binding protein compare
PS417_07710 -1.9 -5.6 membrane protein compare
PS417_22565 -1.9 -0.8 formyltetrahydrofolate deformylase compare
PS417_19195 -1.9 -2.3 hypothetical protein compare
PS417_19600 -1.9 -0.9 exonuclease compare
PS417_10425 -1.9 -1.0 hypothetical protein compare
PS417_10995 -1.9 -2.0 GntR family transcriptional regulator compare
PS417_15865 -1.9 -3.0 hypothetical protein compare
PS417_26985 -1.9 -1.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08620 -1.9 -0.7 hypothetical protein compare
PS417_02485 -1.9 -2.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23080 -1.9 -2.1 sugar ABC transporter ATPase compare
PS417_18420 -1.9 -2.5 deoxyribonuclease compare
PS417_02975 -1.8 -4.0 3-dehydroquinate dehydratase compare
PS417_26380 -1.8 -7.0 YccS/YhfK family integral membrane protein compare
PS417_04500 -1.8 -1.0 hypothetical protein compare
PS417_19380 -1.8 -5.6 glutathione S-transferase compare
PS417_27675 -1.8 -2.6 xanthine phosphoribosyltransferase compare
PS417_16490 -1.7 -1.3 cell division protein FtsK compare
PS417_08350 -1.7 -1.9 preprotein translocase subunit TatD compare
PS417_22705 -1.7 -1.4 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_13885 -1.7 -2.1 chemotaxis protein CheY compare
PS417_04340 -1.7 -3.2 ribosome hibernation promoting factor HPF compare
PS417_21515 -1.7 -4.8 transcriptional regulator compare
PS417_24500 -1.7 -3.0 DEAD/DEAH box helicase compare
PS417_18410 -1.7 -3.0 glutaminase compare
PS417_05975 -1.7 -0.6 chemotaxis protein CheW compare
PS417_22825 -1.6 -3.7 hypothetical protein compare
PS417_26265 -1.6 -1.3 hypothetical protein compare
PS417_11825 -1.6 -1.1 transcriptional regulator compare
PS417_09325 -1.6 -3.5 peptidase S41 compare
PS417_24070 -1.6 -4.4 recombination and repair protein compare
PS417_03400 -1.6 -2.7 D-alanine--D-alanine ligase compare
PS417_00925 -1.6 -1.2 hypothetical protein compare
PS417_18445 -1.6 -1.7 glycerol-3-phosphatase compare
PS417_19655 -1.6 -2.7 chemotaxis protein CheW compare
PS417_03225 -1.6 -5.0 thymidylate synthase conserved
PS417_00180 -1.5 -1.5 tryptophan synthase subunit alpha compare
PS417_09575 -1.5 -1.7 glutathione S-transferase compare
PS417_26545 -1.5 -1.6 16S rRNA methyltransferase compare
PS417_16715 -1.5 -1.2 DoxX family protein compare
PS417_01715 -1.5 -1.0 hypothetical protein compare
PS417_19425 -1.5 -0.5 allantoicase compare
PS417_03300 -1.5 -2.6 alanine acetyltransferase compare
PS417_14045 -1.5 -2.1 alkyl hydroperoxide reductase compare
PS417_00475 -1.5 -2.3 membrane protein compare
PS417_19675 -1.5 -4.3 chemotaxis protein CheY compare
PS417_22715 -1.5 -1.7 heme oxygenase compare
PS417_21120 -1.5 -1.7 phosphoserine phosphatase compare
PS417_20170 -1.5 -2.1 hypothetical protein compare
PS417_26530 -1.5 -0.8 hypothetical protein compare
PS417_27360 -1.4 -1.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_26260 -1.4 -1.1 hypothetical protein compare
PS417_13730 -1.4 -1.1 hypothetical protein compare
PS417_07865 -1.4 -1.5 hypothetical protein compare
PS417_15465 -1.4 -2.4 carboxynorspermidine decarboxylase compare
PS417_08650 -1.4 -1.7 transcriptional regulator compare
PS417_05095 -1.4 -2.3 membrane protein compare
PS417_26230 -1.4 -2.0 electron transfer flavoprotein subunit alpha compare
PS417_05120 -1.4 -1.2 RNA polymerase subunit sigma-24 compare
PS417_26420 -1.4 -0.9 hypothetical protein compare
PS417_06445 -1.4 -1.6 iron-siderophore ABC transporter permease compare
PS417_07510 -1.4 -4.0 aspartyl beta-hydroxylase compare
PS417_25780 -1.4 -1.1 molecular chaperone DnaJ compare
PS417_01400 -1.4 -1.3 hypothetical protein compare
PS417_07085 -1.4 -2.1 transcriptional regulator compare
PS417_21630 -1.4 -2.2 magnesium transporter compare
PS417_08365 -1.4 -0.6 hypothetical protein compare
PS417_17550 -1.4 -2.2 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_06685 -1.3 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_26095 -1.3 -1.7 ornithine cyclodeaminase compare
PS417_24840 -1.3 -1.2 hypothetical protein compare
PS417_09580 -1.3 -1.9 tyrosyl-trna synthetase compare
PS417_24135 -1.3 -1.2 hypothetical protein compare
PS417_01030 -1.3 -0.8 glutamine ABC transporter substrate-binding protein compare
PS417_04595 -1.3 -1.6 cell division protein MraZ compare
PS417_12610 -1.3 -4.4 RNA polymerase sigma factor compare
PS417_23765 -1.3 -1.9 hypothetical protein compare
PS417_01095 -1.3 -0.8 amino acid ABC transporter ATP-binding protein compare
PS417_02045 -1.3 -1.9 3-oxoacyl-ACP synthase compare
PS417_19160 -1.3 -3.7 hypothetical protein compare
PS417_14915 -1.3 -1.1 host specificity protein compare
PS417_12400 -1.2 -1.0 oxidoreductase compare
PS417_00535 -1.2 -1.4 Holliday junction resolvase compare
PS417_04650 -1.2 -0.9 D-alanine--D-alanine ligase compare
PS417_15390 -1.2 -1.0 hypothetical protein compare
PS417_11180 -1.2 -1.4 TetR family transcriptional regulator compare
PS417_12390 -1.2 -1.3 hypothetical protein compare
PS417_02800 -1.2 -1.0 acetyltransferase compare
PS417_04435 -1.2 -4.5 uracil phosphoribosyltransferase compare
PS417_21990 -1.2 -1.0 LacI family transcriptional regulator compare
PS417_21840 -1.2 -2.2 chemotaxis protein compare
PS417_07315 -1.2 -3.2 LysR family transcriptional regulator compare
PS417_07240 -1.2 -1.4 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_19705 -1.2 -1.2 flagellar biosynthesis regulator FlhF compare
PS417_03080 -1.2 -1.3 hypothetical protein compare
PS417_18600 -1.2 -1.1 isopropylmalate isomerase compare
PS417_12540 -1.2 -1.7 hypothetical protein compare
PS417_17580 -1.2 -1.6 citrulline utilization hydrolase (from data) compare
PS417_22935 -1.2 -1.6 hypothetical protein compare
PS417_01150 -1.2 -2.6 taurine ABC transporter substrate-binding protein compare
PS417_14260 -1.2 -1.8 phosphate ABC transporter permease compare
PS417_18205 -1.2 -1.0 aldehyde dehydrogenase compare
PS417_00370 -1.2 -0.6 hypothetical protein compare
PS417_11585 -1.2 -1.2 LuxR family transcriptional regulator compare
PS417_22870 -1.1 -1.3 lipoprotein compare
PS417_19690 -1.1 -1.9 histidine kinase compare
PS417_11070 -1.1 -1.3 rhizopine-binding protein compare
PS417_17160 -1.1 -1.5 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_03780 -1.1 -1.5 general secretion pathway protein GspH compare
PS417_12160 -1.1 -1.4 Fis family transcriptional regulator compare
PS417_09630 -1.1 -2.5 glycosyl transferase compare
PS417_13620 -1.1 -0.8 thermostable hemolysin compare
PS417_00495 -1.1 -2.3 ABC transporter permease compare
PS417_07190 -1.1 -2.5 MFS transporter compare
PS417_24100 -1.1 -3.0 transcriptional regulator PdhR compare
PS417_27555 -1.1 -1.7 DNA-binding protein compare
PS417_24630 -1.1 -1.5 ATP-binding protein compare
PS417_02320 -1.1 -2.8 metal ABC transporter ATPase compare
PS417_11930 -1.1 -3.6 hypothetical protein compare
PS417_11805 -1.1 -2.1 D-threo-aldose 1-dehydrogenase compare
PS417_27105 -1.1 -3.1 spermidine/putrescine ABC transporter permease compare
PS417_23530 -1.1 -2.9 1,2-oxophytodienoate reductase compare
PS417_21480 -1.1 -0.8 23S rRNA pseudouridylate synthase compare
PS417_17890 -1.1 -1.7 3-oxoacyl-ACP reductase compare
PS417_09445 -1.1 -1.7 antibiotic biosynthesis monooxygenase compare
PS417_12015 -1.1 -1.4 phosphoglycerate mutase compare
PS417_05865 -1.1 -1.2 hypothetical protein compare
PS417_02395 -1.1 -2.4 DNA topoisomerase IV subunit B compare
PS417_02495 -1.1 -3.6 GTPase HflX compare
PS417_13650 -1.1 -2.1 LacI family transcriptional regulator compare
PS417_03465 -1.1 -0.7 type III secretion protein compare
PS417_08050 -1.1 -3.7 amino acid amidase compare
PS417_21100 -1.1 -3.3 alpha-L-glutamate ligase compare


Specific Phenotypes

For 15 genes in this experiment

For stress methylglyoxal in Pseudomonas simiae WCS417

For stress methylglyoxal across organisms