Experiment set3IT043 for Pseudomonas simiae WCS417

Compare to:

LB with methylglyoxal 0.032 vol%

200 most detrimental genes:

  gene name fitness t score description  
PS417_23380 +7.7 16.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_23375 +7.0 13.3 cytochrome C oxidase compare
PS417_23390 +6.8 40.5 ubiquinol oxidase subunit II compare
PS417_23385 +6.6 39.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_23370 +6.0 20.2 protoheme IX farnesyltransferase compare
PS417_22520 +5.8 7.6 histidine kinase compare
PS417_21430 +5.1 12.5 3-oxoacyl-ACP synthase compare
PS417_21125 +3.8 13.5 phosphoadenosine phosphosulfate reductase compare
PS417_22205 +3.4 19.5 potassium transporter TrkH conserved
PS417_27245 +3.3 13.3 aminotransferase DegT compare
PS417_08170 +3.2 15.4 capsular biosynthesis protein compare
PS417_14065 +3.1 8.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_10720 +3.1 11.1 chemotaxis protein CheY compare
PS417_00080 +3.0 20.1 potassium transporter peripheral membrane component compare
PS417_26650 +3.0 15.3 histidine kinase compare
PS417_26655 +3.0 10.8 chemotaxis protein compare
PS417_17215 +3.0 9.8 peptidylprolyl isomerase compare
PS417_26660 +2.9 9.8 protein PilI compare
PS417_06370 +2.9 4.5 cold-shock protein compare
PS417_02280 +2.8 4.8 GlcNAc-PI de-N-acetylase compare
PS417_05140 +2.7 4.5 dipicolinate synthase compare
PS417_06200 +2.7 5.6 protein-PII uridylyltransferase compare
PS417_26645 +2.6 5.2 chemotaxis protein compare
PS417_16515 +2.6 1.6 Clp protease ClpS compare
PS417_20610 +2.6 1.9 hypothetical protein compare
PS417_16370 +2.5 10.7 chemotaxis protein CheY compare
PS417_06680 +2.3 14.5 nuclease PIN compare
PS417_22085 +2.3 2.7 aldehyde dehydrogenase compare
PS417_08200 +2.3 5.3 hypothetical protein compare
PS417_20650 +2.3 12.1 hypothetical protein compare
PS417_08205 +2.2 4.9 acetyltransferase compare
PS417_09200 +2.2 7.7 ABC transporter compare
PS417_08190 +2.1 14.0 membrane protein compare
PS417_09205 +2.1 9.6 membrane protein compare
PS417_20855 +2.1 1.5 hypothetical protein compare
PS417_19560 +2.1 8.8 amino acid ABC transporter substrate-binding protein compare
PS417_04580 +2.0 2.4 hypothetical protein compare
PS417_18200 +2.0 1.7 glyoxalase compare
PS417_13800 +1.9 3.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_18355 +1.9 5.6 DNA-binding protein compare
PS417_27490 +1.9 4.1 hypothetical protein compare
PS417_22690 +1.9 4.5 phosphogluconate dehydratase compare
PS417_23210 +1.9 3.3 serine acetyltransferase compare
PS417_02425 +1.9 7.8 thiosulfate sulfurtransferase compare
PS417_17240 +1.8 4.6 trigger factor compare
PS417_28265 +1.8 2.8 pyridoxamine kinase compare
PS417_00510 +1.8 2.0 membrane protein compare
PS417_08540 +1.8 3.9 RNA helicase compare
PS417_08185 +1.8 5.1 glycosyl transferase compare
PS417_13820 +1.8 7.0 UDP-glucose 6-dehydrogenase compare
PS417_08245 +1.7 1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08225 +1.7 5.2 acetolactate synthase compare
PS417_01585 +1.7 4.4 amino acid ABC transporter substrate-binding protein compare
PS417_08195 +1.7 5.8 hypothetical protein compare
PS417_06075 +1.7 2.6 hypothetical protein compare
PS417_08230 +1.6 2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_11770 +1.6 2.1 pyruvate dehydrogenase compare
PS417_26695 +1.6 1.3 uracil phosphoribosyltransferase compare
PS417_27815 +1.6 1.7 hypothetical protein compare
PS417_27155 +1.6 2.4 aliphatic sulfonates transport ATP-binding subunit compare
PS417_21000 +1.6 3.0 CrfX protein compare
PS417_27875 +1.5 7.0 histidine kinase compare
PS417_19790 +1.5 2.5 ATP synthase compare
PS417_00865 +1.5 2.2 hypothetical protein compare
PS417_24835 +1.5 4.9 hypothetical protein compare
PS417_22620 +1.5 3.8 pyruvate kinase compare
PS417_20670 +1.5 4.6 glycosyl transferase family 2 compare
PS417_12585 +1.5 7.0 acriflavine resistance protein B compare
PS417_24675 +1.5 1.9 lipoyl synthase compare
PS417_14165 +1.5 2.2 ArsR family transcriptional regulator compare
PS417_22260 +1.5 2.8 segregation and condensation protein B compare
PS417_04275 +1.4 7.9 hypothetical protein compare
PS417_00900 +1.4 2.2 4-aminobutyrate aminotransferase compare
PS417_27835 +1.4 4.1 endoribonuclease compare
PS417_06945 +1.4 1.1 membrane protein compare
PS417_20115 +1.4 2.3 hypothetical protein compare
PS417_08940 +1.4 2.3 thioesterase compare
PS417_13795 +1.4 6.1 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_02270 +1.4 3.4 carbamoyltransferase compare
PS417_06280 +1.4 2.8 ribonuclease HII compare
PS417_25320 +1.4 6.6 dTDP-4-dehydrorhamnose reductase compare
PS417_09195 +1.4 4.4 glutathione S-transferase compare
PS417_05535 +1.4 1.7 Fis family transcriptional regulator compare
PS417_13805 +1.4 6.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_19090 +1.4 3.1 hypothetical protein compare
PS417_25645 +1.4 3.7 peptidase M23 compare
PS417_03630 +1.3 3.4 hypothetical protein compare
PS417_24520 +1.3 4.1 DNA polymerase III subunit epsilon compare
PS417_13790 +1.3 3.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_13205 +1.3 1.2 isochorismate-pyruvate lyase compare
PS417_15535 +1.3 2.9 oxidoreductase compare
PS417_00825 +1.3 1.9 recombinase RecF compare
PS417_08180 +1.3 6.6 glycosyl transferase compare
PS417_20655 +1.3 6.2 group 1 glycosyl transferase compare
PS417_00755 +1.3 0.9 biofilm PGA synthesis protein PgaD compare
PS417_08335 +1.3 2.2 hypothetical protein compare
PS417_02630 +1.3 2.3 NAD synthetase compare
PS417_03725 +1.3 1.7 acyltransferase compare
PS417_04440 +1.3 1.2 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_13705 +1.3 4.4 oxaloacetate decarboxylase compare
PS417_07540 +1.3 2.1 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_24885 +1.3 2.6 transcriptional regulator compare
PS417_20645 +1.3 5.8 membrane protein compare
PS417_01410 +1.3 1.4 transporter compare
PS417_00355 +1.3 3.3 metal ABC transporter permease compare
PS417_27520 +1.3 6.8 uroporphyrin-III methyltransferase compare
PS417_23135 +1.2 1.6 GTP-binding protein compare
PS417_07840 +1.2 2.7 hypothetical protein compare
PS417_24560 +1.2 2.7 ferrous iron transporter compare
PS417_18360 +1.2 2.6 hypothetical protein compare
PS417_01950 +1.2 3.2 malate dehydrogenase compare
PS417_14345 +1.2 2.8 LysR family transcriptional regulator compare
PS417_16045 +1.2 1.9 acyl-CoA dehydrogenase compare
PS417_23545 +1.2 1.8 gamma-glutamyl kinase compare
PS417_05100 +1.2 1.4 RNA polymerase sigma factor compare
PS417_16855 +1.2 1.6 cation:proton antiporter compare
PS417_28280 +1.2 1.2 hypothetical protein compare
PS417_04365 +1.2 0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_25815 +1.2 3.1 magnesium transporter ApaG compare
PS417_25650 +1.2 2.8 anhydro-N-acetylmuramic acid kinase compare
PS417_18965 +1.2 2.1 dienelactone hydrolase compare
PS417_10050 +1.2 2.1 hypothetical protein compare
PS417_17590 +1.2 1.8 ABC transporter substrate-binding protein compare
PS417_20660 +1.2 4.9 hypothetical protein compare
PS417_12055 +1.2 3.9 xylitol ABC transporter, substrate-binding component (from data) compare
PS417_11440 +1.2 1.2 hypothetical protein compare
PS417_27425 +1.2 5.5 exopolyphosphatase compare
PS417_17610 +1.2 1.4 AsnC family transcriptional regulator compare
PS417_05965 +1.2 1.0 chemotaxis protein CheW compare
PS417_01605 +1.1 1.1 phosphoglycerate mutase compare
PS417_03560 +1.1 1.4 GTP-binding protein compare
PS417_15800 +1.1 3.8 photosynthetic protein synthase I compare
PS417_07845 +1.1 1.1 transcriptional regulator compare
PS417_27515 +1.1 2.2 heme biosynthesis protein HemY compare
PS417_25790 +1.1 4.6 aminoglycoside phosphotransferase compare
PS417_02955 +1.1 2.7 hypothetical protein compare
PS417_08945 +1.1 5.0 heat shock protein 90 compare
PS417_15780 +1.1 1.4 membrane protein compare
PS417_14120 +1.1 3.7 molybdenum ABC transporter permease compare
PS417_19745 +1.1 2.5 flagellar assembly protein FliO compare
PS417_25700 +1.1 1.2 cyclic AMP receptor protein compare
PS417_14110 +1.1 1.5 2-nitropropane dioxygenase compare
PS417_17705 +1.1 1.6 LacI family transcriptional regulator compare
PS417_16510 +1.1 1.6 Clp protease ClpX compare
PS417_27445 +1.1 4.3 membrane protein compare
PS417_07375 +1.1 4.4 ribonuclease D compare
PS417_27900 +1.1 1.3 ABC transporter ATP-binding protein compare
PS417_17780 +1.1 0.9 Ais protein compare
PS417_21510 +1.1 1.4 histidine kinase compare
PS417_06245 +1.1 1.7 zinc metallopeptidase RseP compare
PS417_25120 +1.1 1.9 capsular biosynthesis protein compare
PS417_16920 +1.1 2.0 multidrug RND transporter compare
PS417_07815 +1.1 2.8 hypothetical protein compare
PS417_06100 +1.1 1.4 SAM-dependent methyltransferase compare
PS417_06165 +1.0 2.1 thiamine biosynthesis protein ThiF compare
PS417_18265 +1.0 1.7 AsnC family transcriptional regulator compare
PS417_15650 +1.0 1.2 glutamine amidotransferase compare
PS417_04865 +1.0 2.8 molybdenum cofactor biosynthesis protein MoaC compare
PS417_19200 +1.0 2.1 fumarate hydratase compare
PS417_06465 +1.0 1.8 transcriptional regulator compare
PS417_25105 +1.0 2.9 hypothetical protein compare
PS417_17380 +1.0 2.5 membrane protein compare
PS417_23510 +1.0 2.5 HopJ type III effector protein compare
PS417_18150 +1.0 2.5 chemotaxis protein CheY compare
PS417_21555 +1.0 4.6 flagellar hook protein FlgE compare
PS417_28510 +1.0 2.6 chromosome partitioning protein compare
PS417_06835 +1.0 1.9 phospholipase compare
PS417_06970 +1.0 2.0 LysR family transcriptional regulator compare
PS417_10275 +1.0 1.3 histidine kinase compare
PS417_04410 +1.0 1.3 hypothetical protein compare
PS417_17445 +1.0 1.8 sulfur oxidation protein SoxZ compare
PS417_13785 +1.0 1.9 hypothetical protein compare
PS417_15725 +1.0 1.9 nitrate/nitrite transporter NarK compare
PS417_07245 +1.0 1.3 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_16100 +1.0 2.2 antibiotic biosynthesis monooxygenase compare
PS417_22495 +1.0 2.8 histidine triad (HIT) protein compare
PS417_04225 +1.0 1.6 conjugal transfer protein TraR compare
PS417_17635 +1.0 1.5 hemolysin secretion protein D compare
PS417_11420 +1.0 2.4 potassium transporter KefB compare
PS417_24935 +1.0 0.9 hypothetical protein compare
PS417_25765 +1.0 0.7 transcriptional regulator compare
PS417_10600 +1.0 1.4 hypothetical protein compare
PS417_18560 +1.0 3.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_06105 +1.0 2.5 TetR family transcriptional regulator compare
PS417_26730 +1.0 0.6 pyrroline-5-carboxylate reductase compare
PS417_23150 +1.0 1.5 Cro/Cl family transcriptional regulator compare
PS417_20635 +1.0 0.6 ABC transporter ATP-binding protein compare
PS417_20225 +1.0 2.4 GntR family transcriptional regulator compare
PS417_19490 +1.0 2.3 mechanosensitive ion channel protein compare
PS417_06960 +1.0 2.1 membrane protein compare
PS417_14710 +1.0 1.0 isochorismatase compare
PS417_26850 +1.0 0.6 twin-arginine translocation pathway signal protein compare
PS417_08165 +1.0 5.1 UDP-glucose 4-epimerase compare
PS417_06040 +1.0 1.5 hypothetical protein compare
PS417_12870 +1.0 1.1 enoyl-CoA hydratase compare
PS417_04530 +1.0 1.5 glycerate dehydrogenase compare
PS417_27195 +0.9 1.2 N-acetylglutamate synthase compare
PS417_22340 +0.9 1.4 carbamate kinase compare
PS417_03970 +0.9 1.1 1-phosphofructokinase compare
PS417_04975 +0.9 1.3 response regulator receiver protein compare


Specific Phenotypes

For 15 genes in this experiment

For stress methylglyoxal in Pseudomonas simiae WCS417

For stress methylglyoxal across organisms