Experiment set3IT043 for Pseudomonas simiae WCS417
LB with methylglyoxal 0.032 vol%
Group: stressMedia: LB + methylglyoxal (0.032 vol%)
Culturing: fluoroDangl_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 3/2/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1166 B3,B4
Specific Phenotypes
For 15 genes in this experiment
For stress methylglyoxal in Pseudomonas simiae WCS417
For stress methylglyoxal across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Cysteine metabolism
- Glutathione metabolism
- Pyruvate metabolism
- Metabolism of xenobiotics by cytochrome P450
- Drug metabolism - cytochrome P450
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| thiosulfate disproportionation IV (rhodanese) | 1 | 1 | 1 |
| L-cysteine degradation III | 2 | 1 | 1 |
| methylglyoxal degradation VIII | 3 | 2 | 1 |
| methylglyoxal degradation I | 3 | 2 | 1 |
| 4-hydroxy-2-nonenal detoxification | 4 | 1 | 1 |
| tRNA processing | 10 | 8 | 2 |
| sulfide oxidation IV (mitochondria) | 5 | 2 | 1 |
| pentachlorophenol degradation | 10 | 3 | 2 |
| superpathway of methylglyoxal degradation | 8 | 4 | 1 |
| glutathione-mediated detoxification I | 8 | 3 | 1 |
| gliotoxin biosynthesis | 9 | 2 | 1 |
| glutathione-mediated detoxification II | 9 | 1 | 1 |
| indole glucosinolate activation (intact plant cell) | 12 | 3 | 1 |
| camalexin biosynthesis | 12 | 2 | 1 |