Experiment set3IT043 for Ralstonia solanacearum PSI07
M63_quarter_strength
Group: m63_quarter_strengthMedia: M63_quarter_strength
Culturing: RalstoniaPSI07_ML2, tube, Aerobic, at 28 (C), shaken=200 rpm
By: Tiffany Lowe-Power on 8-Feb-19
Media components: 3.4 g/L Potassium phosphate monobasic, 0.5 g/L Ammonium Sulfate, 1.25e-05 g/L Iron (II) sulfate heptahydrate, 0.0517 mM Magnesium sulfate, 10 mM D-Glucose
Specific Phenotypes
For 6 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose phosphate pathway
- Purine metabolism
- Glycine, serine and threonine metabolism
- Lipopolysaccharide biosynthesis
- Pyruvate metabolism
- Glyoxylate and dicarboxylate metabolism
- Carbon fixation in photosynthetic organisms
- Reductive carboxylate cycle (CO2 fixation)
- Nicotinate and nicotinamide metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| CO2 fixation into oxaloacetate (anaplerotic) | 2 | 2 | 1 |
| ppGpp metabolism | 6 | 6 | 2 |
| L-serine biosynthesis II | 4 | 1 | 1 |
| formaldehyde assimilation I (serine pathway) | 13 | 7 | 2 |
| C4 photosynthetic carbon assimilation cycle, NADP-ME type | 7 | 4 | 1 |
| partial TCA cycle (obligate autotrophs) | 8 | 8 | 1 |
| nitrogen remobilization from senescing leaves | 8 | 6 | 1 |
| photorespiration III | 9 | 5 | 1 |
| photorespiration I | 9 | 5 | 1 |
| C4 photosynthetic carbon assimilation cycle, NAD-ME type | 11 | 8 | 1 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 8 | 1 |
| mixed acid fermentation | 16 | 12 | 1 |
| gluconeogenesis II (Methanobacterium thermoautotrophicum) | 18 | 8 | 1 |
| ethene biosynthesis V (engineered) | 25 | 18 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 18 | 1 |