Experiment set3IT041 for Agrobacterium fabrum C58

Compare to:

L-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0035 -6.7 -10.3 phosphoenolpyruvate carboxykinase compare
Atu0679 -6.1 -7.3 ATP phosphoribosyltransferase compare
Atu3707 -6.0 -4.2 phosphoserine aminotransferase compare
Atu2791 -5.7 -9.9 3-isopropylmalate dehydrogenase compare
Atu0400 -5.5 -6.6 orotate phosphoribosyltransferase compare
Atu3885 -5.5 -9.2 inositol monophosphatase compare
Atu2289 -5.5 -19.0 anthranilate synthase component I and II compare
Atu1620 -5.5 -12.7 triosephosphate isomerase compare
Atu0099 -5.4 -12.1 prephenate dehydratase compare
Atu3740 -5.4 -11.0 fructose bisphosphate aldolase compare
Atu1688 -5.3 -6.3 indole-3-glycerol-phosphate synthase compare
Atu2036 -5.3 -16.1 acetolactate synthase III, large subunit compare
Atu0537 -5.2 -6.2 histidinol dehydrogenase compare
Atu3706 -5.2 -10.5 D-3-phosphoglycerate dehydrogenase compare
Atu2709 -5.0 -19.7 3-isopropylmalate dehydratase, large subunit compare
Atu1687 -5.0 -10.6 anthranilate phosphoribosyltransferase compare
Atu0678 -4.9 -7.5 histidyl-tRNA synthetase compare
Atu2264 -4.9 -13.4 2-isopropylmalate synthase compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu1588 -4.9 -9.0 homoserine dehydrogenase compare
Atu0769 -4.9 -3.4 protoheme IX farnesyltransferase compare
Atu2040 -4.9 -6.7 phosphoserine phosphatase compare
Atu4505 -4.8 -10.7 LacI family transcriptional regulator compare
Atu2747 -4.8 -15.2 hypothetical protein compare
Atu1205 -4.7 -14.3 threonine dehydratase compare
Atu2650 -4.7 -11.7 glycerol-3-phosphate dehydrogenase compare
Atu0432 -4.6 -9.9 O-succinylhomoserine sulfhydrylase compare
Atu2718 -4.5 -9.6 homoserine O-succinyltransferase compare
Atu0017 -4.4 -4.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1075 -4.4 -9.0 amidophosphoribosyltransferase compare
Atu0038 -4.4 -4.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3755 -4.4 -7.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1845 -4.3 -5.4 phosphoribosylformylglycinamidine synthase I compare
Atu2790 -4.3 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu0039 -4.2 -2.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu0647 -4.2 -8.0 phosphoribosylamine--glycine ligase compare
Atu0043 -4.2 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu3293 -4.0 -10.5 D-amino acid dehydrogenase small subunit conserved
Atu3739 -4.0 -2.3 phosphoglycerate kinase compare
Atu0486 -3.9 -7.7 dihydroorotate dehydrogenase compare
Atu2115 -3.9 -13.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1140 -3.9 -7.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1446 -3.8 -4.3 two component response regulator compare
Atu3292 -3.8 -17.9 alanine racemase conserved
Atu1750 -3.7 -7.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu1850 -3.7 -3.2 phosphoribosylformylglycinamidine synthetase II compare
Atu3291 -3.6 -5.8 Lpr family transcriptional regulator compare
Atu0298 -3.5 -7.7 orotidine 5 compare
Atu0399 -3.5 -7.6 dihydroorotase compare
Atu3784 -3.5 -23.7 glutamate synthase large subunit compare
Atu3754 -3.5 -6.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2015 -3.5 -12.7 aminotransferase compare
Atu1686 -3.5 -16.5 peptidyl-prolyl cis-trans isomerse D compare
Atu1844 -3.4 -4.1 Phosphoribosylformylglycinamidine synthetase compare
Atu3783 -3.4 -16.8 glutamate synthase subunit beta compare
Atu1141 -3.4 -8.7 Phosphoribosylglycinamide synthetase compare
Atu3469 -3.4 -3.9 phosphoglyceromutase compare
Atu1308 -3.3 -5.1 aspartate carbamoyl transferase catalytic subunit compare
Atu1307 -3.2 -5.8 dihydroorotase compare
Atu1030 -2.9 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0040 -2.7 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0346 -2.5 -3.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3482 -2.5 -10.4 pantoate--beta-alanine ligase compare
Atu3483 -2.4 -6.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu5468 -2.4 -3.0 hypothetical protein compare
Atu1589 -2.4 -7.7 aminotransferase, class I compare
Atu0723 -2.3 -2.7 FAD dependent oxidoreductase compare
Atu1445 -2.2 -7.3 two component sensor kinase compare
Atu0876 -2.1 -2.4 superoxide dismutase compare
Atu3290 -2.0 -11.4 phosphomethylpyrimidine kinase compare
Atu2548 -1.9 -13.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0332 -1.9 -9.6 RNA polymerase sigma-54 factor compare
Atu1685 -1.8 -1.4 hypothetical protein compare
Atu0641 -1.7 -3.8 hypothetical protein compare
Atu3298 -1.6 -8.5 C4-dicarboxylate transporter DctA compare
Atu2569 -1.6 -9.4 thiamine biosynthesis protein compare
Atu4096 -1.6 -6.3 nicotinate-nucleotide pyrophosphorylase compare
Atu3297 -1.5 -10.2 two component sensor kinase for C4-dicarboxylate transport compare
Atu4773 -1.5 -2.3 two component response regulator compare
Atu2155 -1.5 -11.3 methionine synthase compare
Atu8115 -1.5 -3.8 Hypothetical Protein compare
Atu2017 -1.5 -1.2 hypothetical protein compare
Atu3120 -1.4 -1.6 hypothetical protein compare
Atu0141 -1.4 -1.4 cytochrome O ubiquinol oxidase subunit I compare
Atu1748 -1.4 -7.2 NIFU-like protein compare
Atu0030 -1.4 -1.6 phosphocarrier protein HPr compare
Atu4098 -1.3 -8.5 quinolinate synthetase compare
Atu0422 -1.3 -2.2 ABC transporter, membrane spanning protein compare
Atu3296 -1.3 -6.5 two component response regulator for C4-dicarboxylate transport compare
Atu3288 -1.2 -5.3 hydroxyethylthiazole kinase compare
Atu3731 -1.2 -6.6 5-formyltetrahydrofolate cyclo-ligase compare
Atu2634 -1.2 -1.6 hypothetical protein compare
Atu1810 -1.2 -1.5 hypothetical protein compare
Atu6098 -1.2 -0.7 transcriptional regulator, HTH family compare
Atu5088 -1.2 -1.9 hypothetical protein compare
Atu0544 -1.2 -2.2 hypothetical protein compare
Atu0029 -1.2 -4.4 S-adenosylhomocysteine hydrolase compare
Atu0566 -1.1 -1.6 hypothetical protein compare
Atu0434 -1.1 -1.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0690 -1.1 -1.7 hypothetical protein compare
Atu1579 -1.1 -6.9 ABC transporter, membrane spanning protein (amino acid) compare
Atu5475 -1.1 -1.3 hypothetical protein compare
Atu4097 -1.1 -5.6 L-aspartate oxidase compare
Atu1103 -1.1 -2.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1039 -1.1 -3.5 DNA repair protein RecO compare
Atu2183 -1.0 -5.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0986 -1.0 -1.2 hypothetical protein compare
Atu1577 -1.0 -2.9 ABC transporter, substrate binding protein (amino acid) compare
Atu4711 -1.0 -4.2 two component sensor kinase compare
Atu0142 -1.0 -2.3 cytochrome o ubiquinol oxidase subunit II compare
Atu1462 -1.0 -5.5 glycine cleavage system protein P2 compare
Atu4613 -1.0 -6.5 glycosyltransferase compare
Atu8177 -1.0 -4.0 hypothetical protein compare
Atu5028 -1.0 -1.2 IS426 transposase compare
Atu0361 -1.0 -1.2 transcriptional regulator compare
Atu1454 -0.9 -4.1 siroheme synthase compare
Atu0941 -0.9 -0.9 hypothetical protein compare
Atu2684 -0.9 -1.5 hypothetical protein compare
Atu8056 -0.9 -1.0 hypothetical protein compare
Atu0031 -0.9 -1.2 PTS system, IIA component compare
Atu1578 -0.9 -3.7 ABC transporter, membrane spanning protein (amino acid) compare
Atu1464 -0.9 -3.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu0777 -0.9 -0.8 hypothetical protein compare
Atu2772 -0.9 -2.4 Invasion protein A compare
Atu0086 -0.9 -1.0 ribosome-binding factor A compare
Atu1232 -0.9 -1.9 hypothetical protein compare
Atu0107 -0.9 -1.0 hypothetical protein compare
Atu1737 -0.9 -1.8 hypothetical protein compare
Atu1456 -0.9 -3.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3429 -0.9 -1.3 hypothetical protein compare
Atu1028 -0.9 -2.0 hypothetical protein compare
Atu4166 -0.9 -1.6 UDP-glucose 4-epimerase compare
Atu0025 -0.9 -1.1 hypothetical protein compare
Atu1455 -0.8 -1.6 hypothetical protein compare
Atu0331 -0.8 -1.7 sigma-54 modulation protein compare
Atu4161 -0.8 -1.6 hypothetical protein compare
Atu1021 -0.8 -1.2 outer membrane protein compare
Atu3750 -0.8 -1.8 thiamine-phosphate pyrophosphorylase compare
Atu1846 -0.8 -1.4 hypothetical protein compare
Atu3289 -0.8 -2.1 thiamine-phosphate pyrophosphorylase compare
Atu2335 -0.8 -1.6 hypothetical protein compare
Atu3663 -0.8 -1.3 hypothetical protein compare
Atu2796 -0.8 -3.4 precorrin-4 C11-methyltransferase compare
Atu1774 -0.8 -3.5 ABC transporter, substrate binding protein (peptide) compare
Atu5186 -0.8 -1.4 hypothetical protein compare
Atu1359 -0.8 -0.8 dnaK deletion suppressor protein compare
Atu2746 -0.8 -2.2 hypothetical protein compare
Atu0026 -0.8 -0.8 hypothetical protein compare
Atu4346 -0.8 -3.3 hypothetical protein compare
Atu1573 -0.8 -1.5 hypothetical protein compare
Atu4618 -0.7 -5.2 dTDP-rhamnose-3,5-epimerase compare
Atu3759 -0.7 -1.3 hypothetical protein compare
Atu5160 -0.7 -2.0 transcriptional regulator protein compare
Atu2803 -0.7 -2.5 Cobalamin biosynthesis associated protein compare
Atu5142 -0.7 -1.0 hypothetical protein compare
Atu2805 -0.7 -3.7 cobalamin synthesis protein compare
Atu4617 -0.7 -4.0 dTDP-D-glucose-4,6-dehydratase compare
Atu2807 -0.7 -3.8 cob(I)alamin adenosyltransferase compare
Atu6114 -0.7 -1.3 hypothetical protein compare
Atu0421 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu2044 -0.7 -2.5 HFLC protein compare
Atu4615 -0.7 -3.4 glucose-1-phosphate thymidylyltransferase compare
Atu0878 -0.7 -3.1 hypothetical protein compare
Atu1679 -0.7 -1.5 peptidyl prolyl cis-trans isomerase compare
Atu2678 -0.7 -2.6 2'-5' RNA ligase compare
Atu8099 -0.7 -1.4 hypothetical protein compare
Atu2812 -0.7 -2.6 hypothetical protein compare
Atu3727 -0.7 -1.7 hypothetical protein compare
Atu4614 -0.7 -3.9 glycosyltransferase compare
Atu2209 -0.6 -1.9 pyrroline-5-carboxylate reductase compare
Atu1364 -0.6 -2.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0809 -0.6 -1.0 hypothetical protein compare
Atu1463 -0.6 -2.8 glycine cleavage system component H compare
Atu2205 -0.6 -2.4 transcriptional regulator, MarR family compare
Atu1836 -0.6 -1.4 hypothetical protein compare
Atu4317 -0.6 -1.8 TetR family transcriptional regulator compare
Atu5164 -0.6 -0.5 type IV secretion protein AvhB3 compare
Atu4072 -0.6 -1.3 nodulation protein N compare
Atu1848 -0.6 -2.1 transcriptional regulator, GntR family compare
Atu0966 -0.6 -1.4 hypothetical protein compare
Atu2793 -0.6 -2.1 cobyrinic acid a,c-diamide synthase compare
Atu3011 -0.6 -1.6 ArsR family transcriptional regulator compare
Atu2376 -0.6 -0.4 hypothetical protein compare
Atu3997 -0.6 -4.3 biotin synthetase compare
Atu2757 -0.6 -2.3 nitrogen regulatory protein PII compare
Atu6153 -0.6 -1.4 conserved hypothetical protein compare
Atu4173 -0.6 -1.5 phosphoenolpyruvate-protein phosphotransferase compare
Atu1372 -0.6 -2.5 hypothetical protein compare
Atu1575 -0.6 -3.0 cystathionine beta lyase compare
Atu0977 -0.6 -1.7 serine protease DO-like protease compare
Atu1484 -0.6 -2.1 transcriptional regulator compare
Atu2799 -0.6 -2.0 precorrin-6x reductase compare
Atu2640 -0.6 -2.2 hypothetical protein compare
Atu0677 -0.6 -0.7 hypothetical protein compare
Atu1621 -0.6 -2.7 hypothetical protein compare
Atu8034 -0.6 -2.4 hypothetical protein compare
Atu3579 -0.6 -2.0 lactoylglutathione lyase compare
Atu2057 -0.6 -1.7 DNA helicase II compare
Atu1358 -0.6 -2.0 hypothetical protein compare
Atu0382 -0.6 -1.6 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source L-Alanine in Agrobacterium fabrum C58

For nitrogen source L-Alanine across organisms