Experiment set3IT040 for Pseudomonas simiae WCS417

Compare to:

LB with Gentamicin sulfate salt 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_28070 -4.3 -6.3 phosphate ABC transporter ATP-binding protein compare
PS417_17945 -4.2 -1.0 hypothetical protein compare
PS417_06375 -4.1 -0.9 deoxycytidine triphosphate deaminase compare
PS417_22570 -3.9 -0.9 H-NS histone compare
PS417_08540 -3.8 -2.4 RNA helicase compare
PS417_16490 -3.6 -1.6 cell division protein FtsK compare
PS417_23775 -3.6 -2.2 exodeoxyribonuclease V subunit beta compare
PS417_14065 -3.6 -10.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_23770 -3.5 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_27800 -3.5 -8.5 exodeoxyribonuclease III compare
PS417_04590 -3.5 -9.3 methyltransferase compare
PS417_27245 -3.4 -5.3 aminotransferase DegT compare
PS417_13790 -3.4 -6.1 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_22520 -3.3 -2.5 histidine kinase compare
PS417_25650 -3.3 -4.9 anhydro-N-acetylmuramic acid kinase compare
PS417_13820 -3.3 -10.9 UDP-glucose 6-dehydrogenase compare
PS417_20855 -3.3 -1.0 hypothetical protein compare
PS417_04170 -3.3 -6.6 stringent starvation protein A compare
PS417_01915 -3.2 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_13800 -3.2 -2.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13795 -3.1 -10.5 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_27610 -3.1 -5.1 hypothetical protein compare
PS417_02280 -3.0 -1.9 GlcNAc-PI de-N-acetylase compare
PS417_13805 -3.0 -10.8 4-amino-4-deoxy-L-arabinose transferase compare
PS417_26900 -3.0 -1.9 L-cystine transporter tcyP compare
PS417_07565 -3.0 -2.6 hypothetical protein compare
PS417_12855 -2.9 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19600 -2.9 -0.9 exonuclease compare
PS417_07620 -2.8 -1.7 beta-hexosaminidase compare
PS417_23950 -2.8 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_26525 -2.8 -10.9 DEAD/DEAH box helicase compare
PS417_07470 -2.7 -1.0 hypothetical protein compare
PS417_21515 -2.7 -12.8 transcriptional regulator compare
PS417_01920 -2.7 -1.4 ATP-dependent protease subunit HslV compare
PS417_22205 -2.7 -8.7 potassium transporter TrkH compare
PS417_06245 -2.7 -2.5 zinc metallopeptidase RseP compare
PS417_06100 -2.6 -1.7 SAM-dependent methyltransferase compare
PS417_27510 -2.6 -6.4 disulfide bond formation protein B conserved
PS417_04875 -2.6 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_06205 -2.6 -9.3 methionine aminopeptidase compare
PS417_26660 -2.6 -3.6 protein PilI compare
PS417_17215 -2.6 -4.7 peptidylprolyl isomerase compare
PS417_00080 -2.6 -8.6 potassium transporter peripheral membrane component compare
PS417_24030 -2.5 -2.8 MFS transporter compare
PS417_22795 -2.5 -2.1 exclusion suppressor FxsA compare
PS417_26650 -2.5 -9.0 histidine kinase compare
PS417_16510 -2.5 -3.1 Clp protease ClpX compare
PS417_28515 -2.5 -4.3 16S rRNA methyltransferase compare
PS417_25645 -2.5 -7.2 peptidase M23 compare
PS417_12585 -2.4 -6.1 acriflavine resistance protein B compare
PS417_27795 -2.4 -0.9 orotate phosphoribosyltransferase compare
PS417_16515 -2.3 -2.2 Clp protease ClpS compare
PS417_00185 -2.3 -3.2 tryptophan synthase subunit beta compare
PS417_04650 -2.3 -0.9 D-alanine--D-alanine ligase compare
PS417_06680 -2.3 -10.0 nuclease PIN compare
PS417_05510 -2.3 -7.4 alpha/beta hydrolase compare
PS417_11925 -2.3 -1.9 hypothetical protein compare
PS417_05975 -2.2 -0.8 chemotaxis protein CheW compare
PS417_12595 -2.2 -1.2 transcriptional regulator compare
PS417_05505 -2.2 -8.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_17675 -2.2 -1.3 ABC transporter compare
PS417_07575 -2.2 -3.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_24705 -2.2 -3.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_06645 -2.2 -10.4 RNA polymerase-associated protein RapA compare
PS417_24710 -2.2 -5.1 lipoprotein compare
PS417_24835 -2.2 -4.7 hypothetical protein compare
PS417_05525 -2.1 -5.3 Fis family transcriptional regulator compare
PS417_05500 -2.1 -1.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_28080 -2.1 -8.6 phosphate ABC transporter permease compare
PS417_16310 -2.1 -5.2 membrane protein conserved
PS417_25790 -2.1 -4.9 aminoglycoside phosphotransferase compare
PS417_08125 -2.1 -1.1 prephenate dehydratase compare
PS417_07695 -2.1 -7.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_15090 -2.1 -3.1 hypothetical protein compare
PS417_06770 -2.1 -5.8 multidrug transporter compare
PS417_22620 -2.1 -3.0 pyruvate kinase compare
PS417_23205 -2.1 -2.3 transcriptional regulator compare
PS417_00180 -2.0 -3.3 tryptophan synthase subunit alpha compare
PS417_05140 -2.0 -1.6 dipicolinate synthase compare
PS417_13780 -2.0 -5.9 integrase compare
PS417_00925 -2.0 -1.9 hypothetical protein compare
PS417_22815 -2.0 -5.9 permease compare
PS417_27605 -2.0 -4.1 hypothetical protein compare
PS417_11900 -2.0 -6.4 conjugal transfer protein TraR compare
PS417_15095 -2.0 -3.1 hypothetical protein compare
PS417_26990 -1.9 -1.2 RNA pyrophosphohydrolase compare
PS417_02210 -1.9 -6.8 diguanylate cyclase compare
PS417_23155 -1.9 -3.7 pilus assembly protein PilW compare
PS417_27640 -1.9 -1.4 TetR family transcriptional regulator compare
PS417_00385 -1.9 -0.8 Fur family transcriptional regulator compare
PS417_11880 -1.9 -2.5 oxidoreductase compare
PS417_00195 -1.9 -1.7 hypothetical protein compare
PS417_06860 -1.9 -4.4 methyltransferase compare
PS417_00045 -1.9 -1.8 glycerol acyltransferase compare
PS417_04365 -1.8 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_25635 -1.8 -5.0 biotin--protein ligase compare
PS417_19125 -1.8 -3.1 LysR family transcriptional regulator compare
PS417_01270 -1.8 -1.5 iron ABC transporter substrate-binding protein compare
PS417_23475 -1.8 -1.2 hypothetical protein compare
PS417_00995 -1.8 -1.5 alpha/beta hydrolase compare
PS417_10220 -1.8 -2.8 hypothetical protein compare
PS417_02495 -1.8 -3.0 GTPase HflX compare
PS417_11930 -1.8 -6.1 hypothetical protein compare
PS417_02475 -1.8 -3.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_14995 -1.8 -4.0 serine/threonine protein kinase compare
PS417_23150 -1.8 -1.9 Cro/Cl family transcriptional regulator compare
PS417_07875 -1.7 -0.7 hypothetical protein compare
PS417_14200 -1.7 -2.0 hypothetical protein compare
PS417_27595 -1.7 -2.0 recombinase XerC compare
PS417_20825 -1.7 -1.8 drug:proton antiporter compare
PS417_28185 -1.7 -2.3 homocysteine methyltransferase compare
PS417_06775 -1.7 -3.7 antibiotic transporter compare
PS417_23080 -1.7 -2.1 sugar ABC transporter ATPase compare
PS417_08410 -1.7 -1.9 hypothetical protein compare
PS417_15325 -1.6 -1.0 type VI secretion protein compare
PS417_18545 -1.6 -3.2 cell division protein compare
PS417_23135 -1.6 -1.7 GTP-binding protein compare
PS417_17000 -1.6 -2.2 MerR family transcriptional regulator compare
PS417_00405 -1.6 -7.3 DNA polymerase I compare
PS417_12380 -1.6 -4.0 peptidase S54 compare
PS417_24265 -1.6 -4.2 ABC transporter ATP-binding protein compare
PS417_22690 -1.6 -3.5 phosphogluconate dehydratase compare
PS417_18730 -1.6 -2.1 ABC transporter permease compare
PS417_08580 -1.6 -4.8 histidine kinase compare
PS417_12175 -1.6 -3.0 peptide ABC transporter permease compare
PS417_13425 -1.6 -1.7 cupin compare
PS417_28225 -1.6 -1.2 hypothetical protein compare
PS417_24905 -1.6 -4.4 DNA-binding protein compare
PS417_28295 -1.6 -3.0 glutamine synthetase compare
PS417_17070 -1.6 -1.4 RNA polymerase subunit sigma-24 compare
PS417_05520 -1.6 -5.6 histidine kinase compare
PS417_26645 -1.6 -2.0 chemotaxis protein compare
PS417_18435 -1.5 -2.1 hypothetical protein compare
PS417_27810 -1.5 -6.3 ribonuclease PH compare
PS417_03740 -1.5 -4.1 peptidylprolyl isomerase compare
PS417_19350 -1.5 -3.8 GTP cyclohydrolase compare
PS417_20850 -1.5 -6.6 hypothetical protein compare
PS417_01165 -1.5 -6.9 transcription accessory protein compare
PS417_02630 -1.5 -2.1 NAD synthetase compare
PS417_15110 -1.5 -3.8 protein BatD compare
PS417_07170 -1.5 -2.7 hypothetical protein compare
PS417_13445 -1.5 -1.0 D-aminopeptidase compare
PS417_21065 -1.5 -1.7 3-methylitaconate isomerase compare
PS417_15085 -1.5 -4.6 ATPase AAA compare
PS417_00755 -1.5 -0.6 biofilm PGA synthesis protein PgaD compare
PS417_23025 -1.4 -5.2 murein transglycosylase compare
PS417_18885 -1.4 -1.8 GntR family transcriptional regulator compare
PS417_16720 -1.4 -0.8 membrane protein compare
PS417_22615 -1.4 -3.9 hypothetical protein compare
PS417_05695 -1.4 -2.5 transcriptional regulator compare
PS417_21850 -1.4 -1.0 LysR family transcriptional regulator compare
PS417_03875 -1.4 -1.6 membrane protein compare
PS417_01790 -1.4 -4.2 glucan biosynthesis protein G compare
PS417_22400 -1.4 -5.9 7-cyano-7-deazaguanine synthase compare
PS417_15105 -1.4 -4.8 membrane protein compare
PS417_26730 -1.4 -0.8 pyrroline-5-carboxylate reductase compare
PS417_23900 -1.4 -6.5 poly(A) polymerase compare
PS417_05555 -1.4 -2.5 amino acid ABC transporter permease compare
PS417_02270 -1.4 -2.5 carbamoyltransferase compare
PS417_15915 -1.4 -0.8 hypothetical protein compare
PS417_08650 -1.4 -1.9 transcriptional regulator compare
PS417_17785 -1.4 -5.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_26655 -1.4 -2.8 chemotaxis protein compare
PS417_16815 -1.4 -1.6 acyl-CoA dehydrogenase compare
PS417_23880 -1.4 -5.6 glutamyl-Q tRNA(Asp) ligase compare
PS417_14980 -1.4 -0.8 universal stress protein UspA compare
PS417_10810 -1.4 -1.4 hypothetical protein compare
PS417_14805 -1.4 -1.2 AraC family transcriptional regulator compare
PS417_21430 -1.4 -1.5 3-oxoacyl-ACP synthase compare
PS417_10675 -1.3 -0.7 TetR family transcriptional regulator compare
PS417_01600 -1.3 -4.3 peptidase M23 compare
PS417_03100 -1.3 -0.7 pilus assembly protein compare
PS417_06370 -1.3 -1.0 cold-shock protein compare
PS417_23670 -1.3 -2.5 Muconate cycloisomerase (EC 5.5.1.1) (from data) compare
PS417_22990 -1.3 -1.0 iron dicitrate transport regulator FecR compare
PS417_01795 -1.3 -6.2 glucosyltransferase MdoH compare
PS417_01630 -1.3 -1.4 hypothetical protein compare
PS417_22450 -1.3 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_27815 -1.3 -1.1 hypothetical protein compare
PS417_10765 -1.3 -3.5 hypothetical protein compare
PS417_19730 -1.3 -1.6 flagellar biosynthesis protein FliR compare
PS417_14960 -1.3 -5.9 ATPase compare
PS417_12755 -1.3 -2.1 RND transporter compare
PS417_19805 -1.3 -1.7 flagellar M-ring protein FliF compare
PS417_26800 -1.3 -4.9 cell division protein FtsX compare
PS417_09695 -1.3 -1.5 hydrolase compare
PS417_03490 -1.3 -3.9 type III secretion system protein SsaR compare
PS417_23210 -1.3 -1.4 serine acetyltransferase compare
PS417_19475 -1.3 -3.9 pseudouridine synthase compare
PS417_27515 -1.3 -2.6 heme biosynthesis protein HemY compare
PS417_23765 -1.3 -1.9 hypothetical protein compare
PS417_15975 -1.2 -1.2 glutamate carboxypeptidase compare
PS417_18310 -1.2 -1.5 hypothetical protein compare
PS417_00960 -1.2 -1.5 transcriptional regulator compare
PS417_24395 -1.2 -3.3 hemolysin D compare
PS417_08665 -1.2 -3.4 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_23995 -1.2 -0.6 preprotein translocase subunit SecG compare
PS417_19865 -1.2 -5.6 flagellar hook protein FlgK compare
PS417_07940 -1.2 -1.5 hypothetical protein compare
PS417_23105 -1.2 -1.0 hypothetical protein compare


Specific Phenotypes

For 45 genes in this experiment

For stress Gentamicin sulfate salt in Pseudomonas simiae WCS417

For stress Gentamicin sulfate salt across organisms