Experiment set3IT039 for Pseudomonas simiae WCS417

Compare to:

LB with Nalidixic acid sodium salt 0.025 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_06770 -5.0 -9.0 multidrug transporter compare
PS417_06775 -4.7 -6.5 antibiotic transporter compare
PS417_05815 -4.7 -7.1 recombinase RecA compare
PS417_23770 -4.6 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_04380 -4.0 -2.9 ABC transporter permease compare
PS417_23095 -4.0 -2.0 exodeoxyribonuclease compare
PS417_02255 -3.8 -5.1 lipopolysaccharide kinase compare
PS417_07710 -3.8 -7.8 membrane protein compare
PS417_04390 -3.6 -9.6 toluene tolerance protein compare
PS417_04385 -3.5 -7.6 organic solvent ABC transporter substrate-binding protein compare
PS417_02270 -3.4 -7.5 carbamoyltransferase compare
PS417_28070 -3.2 -9.0 phosphate ABC transporter ATP-binding protein compare
PS417_20985 -3.1 -4.9 porin compare
PS417_04375 -3.0 -4.0 ABC transporter ATP-binding protein compare
PS417_22445 -2.9 -6.1 ATP-dependent DNA helicase RuvB compare
PS417_15115 -2.8 -5.4 exonuclease SbcD compare
PS417_15120 -2.8 -8.2 chromosome segregation protein SMC compare
PS417_22450 -2.7 -2.4 ATP-dependent DNA helicase RuvA compare
PS417_04650 -2.6 -2.5 D-alanine--D-alanine ligase compare
PS417_28080 -2.6 -12.9 phosphate ABC transporter permease compare
PS417_12595 -2.5 -1.7 transcriptional regulator compare
PS417_16490 -2.4 -3.0 cell division protein FtsK compare
PS417_28085 -2.3 -8.6 phosphate-binding protein compare
PS417_24835 -2.1 -6.5 hypothetical protein compare
PS417_02555 -2.1 -14.7 exoribonuclease R compare
PS417_27595 -2.0 -4.2 recombinase XerC compare
PS417_07510 -2.0 -7.6 aspartyl beta-hydroxylase compare
PS417_27245 -1.9 -3.7 aminotransferase DegT compare
PS417_23900 -1.9 -7.8 poly(A) polymerase compare
PS417_18355 -1.9 -7.4 DNA-binding protein compare
PS417_27870 -1.8 -3.5 ATP-dependent DNA helicase RecG compare
PS417_04590 -1.8 -6.0 methyltransferase compare
PS417_22575 -1.7 -8.8 exonuclease I compare
PS417_13820 -1.7 -9.6 UDP-glucose 6-dehydrogenase compare
PS417_19625 -1.6 -3.8 histidine kinase compare
PS417_19675 -1.6 -5.0 chemotaxis protein CheY compare
PS417_05695 -1.6 -3.4 transcriptional regulator compare
PS417_06370 -1.6 -2.2 cold-shock protein compare
PS417_08580 -1.6 -5.6 histidine kinase compare
PS417_05820 -1.5 -2.9 recombinase RecX compare
PS417_16520 -1.5 -2.1 cold-shock protein compare
PS417_04585 -1.5 -2.1 hypothetical protein compare
PS417_05515 -1.5 -6.1 hypothetical protein compare
PS417_02720 -1.4 -1.6 TetR family transcriptional regulator compare
PS417_13790 -1.4 -4.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_15090 -1.4 -2.2 hypothetical protein compare
PS417_17215 -1.4 -3.6 peptidylprolyl isomerase compare
PS417_13805 -1.4 -7.2 4-amino-4-deoxy-L-arabinose transferase compare
PS417_00385 -1.3 -1.2 Fur family transcriptional regulator compare
PS417_24705 -1.3 -4.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_27865 -1.3 -3.3 LysR family transcriptional regulator compare
PS417_18425 -1.3 -1.2 sporulation protein compare
PS417_26530 -1.3 -1.9 hypothetical protein compare
PS417_23580 -1.3 -1.8 peptidylprolyl isomerase compare
PS417_19095 -1.2 -1.5 hypothetical protein compare
PS417_15030 -1.2 -1.4 short-chain dehydrogenase compare
PS417_14400 -1.2 -2.4 hypothetical protein compare
PS417_09235 -1.2 -1.1 molecular chaperone compare
PS417_15885 -1.2 -1.9 GCN5 family acetyltransferase compare
PS417_24030 -1.2 -2.8 MFS transporter compare
PS417_06395 -1.2 -2.5 amino acid transporter compare
PS417_02280 -1.2 -1.0 GlcNAc-PI de-N-acetylase compare
PS417_24155 -1.2 -2.4 ATP-binding protein compare
PS417_28075 -1.2 -2.5 phosphate ABC transporter permease compare
PS417_01965 -1.2 -1.7 fimbriae biosynthesis protein compare
PS417_20850 -1.2 -5.3 hypothetical protein compare
PS417_24070 -1.2 -7.1 recombination and repair protein conserved
PS417_20715 -1.2 -2.6 cytochrome Cbb3 compare
PS417_02740 -1.2 -1.6 LysR family transcriptional regulator compare
PS417_13800 -1.2 -3.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_12840 -1.1 -3.1 TetR family transcriptional regulator compare
PS417_06350 -1.1 -5.0 stationary phase survival protein SurE compare
PS417_27290 -1.1 -2.1 hypothetical protein compare
PS417_26990 -1.1 -1.6 RNA pyrophosphohydrolase compare
PS417_28515 -1.1 -5.2 16S rRNA methyltransferase compare
PS417_15095 -1.1 -2.7 hypothetical protein compare
PS417_24615 -1.1 -0.9 hypothetical protein compare
PS417_23080 -1.1 -2.2 sugar ABC transporter ATPase compare
PS417_04270 -1.1 -4.8 ribonuclease G compare
PS417_17070 -1.1 -1.6 RNA polymerase subunit sigma-24 compare
PS417_04365 -1.1 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19415 -1.1 -1.7 allantoinase compare
PS417_14590 -1.0 -1.5 LysR family transcriptional regulator compare
PS417_11930 -1.0 -4.5 hypothetical protein compare
PS417_23150 -1.0 -2.0 Cro/Cl family transcriptional regulator compare
PS417_02210 -1.0 -4.5 diguanylate cyclase compare
PS417_24370 -1.0 -0.8 (2Fe-2S)-binding protein compare
PS417_17240 -1.0 -3.0 trigger factor compare
PS417_17925 -1.0 -2.3 acyl-CoA dehydrogenase compare
PS417_09150 -1.0 -2.5 energy transducer TonB compare
PS417_22895 -1.0 -5.6 tyrosine recombinase XerD compare
PS417_13075 -1.0 -1.4 hypothetical protein compare
PS417_15875 -1.0 -1.5 LuxR family transcriptional regulator compare
PS417_03815 -1.0 -2.7 DNA transporter compare
PS417_13795 -1.0 -3.7 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_19630 -1.0 -2.7 LuxR family transcriptional regulator compare
PS417_14065 -1.0 -4.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13305 -1.0 -1.1 hypothetical protein compare
PS417_09325 -1.0 -1.9 peptidase S41 compare
PS417_11825 -1.0 -1.6 transcriptional regulator compare
PS417_15200 -1.0 -2.7 protein activator of alkane oxidation PraB compare
PS417_21090 -1.0 -2.3 hypothetical protein compare
PS417_04595 -0.9 -2.5 cell division protein MraZ compare
PS417_27605 -0.9 -3.8 hypothetical protein compare
PS417_07035 -0.9 -5.7 uracil-DNA glycosylase compare
PS417_17490 -0.9 -1.9 ABC transporter ATP-binding protein compare
PS417_16510 -0.9 -2.2 Clp protease ClpX compare
PS417_27590 -0.9 -4.7 hypothetical protein compare
PS417_03785 -0.9 -2.1 pilus assembly protein PilV compare
PS417_03550 -0.9 -2.1 hypothetical protein compare
PS417_24780 -0.9 -6.8 peptidase C13 compare
PS417_05830 -0.9 -3.1 hypothetical protein compare
PS417_18365 -0.9 -4.8 hypothetical protein compare
PS417_24895 -0.9 -1.2 hypothetical protein compare
PS417_23825 -0.9 -4.1 penicillin-binding protein compare
PS417_11615 -0.9 -1.4 urea ABC transporter ATP-binding protein compare
PS417_15085 -0.9 -3.0 ATPase AAA compare
PS417_09920 -0.9 -2.0 hypothetical protein compare
PS417_24305 -0.9 -4.6 DNA repair protein RadA compare
PS417_07140 -0.9 -1.8 peptidase M48 compare
PS417_00180 -0.8 -1.2 tryptophan synthase subunit alpha compare
PS417_24710 -0.8 -4.2 lipoprotein compare
PS417_06245 -0.8 -1.1 zinc metallopeptidase RseP compare
PS417_04170 -0.8 -2.9 stringent starvation protein A compare
PS417_08410 -0.8 -1.8 hypothetical protein compare
PS417_18420 -0.8 -2.2 deoxyribonuclease compare
PS417_07170 -0.8 -2.7 hypothetical protein compare
PS417_17795 -0.8 -1.2 ABC transporter permease compare
PS417_16810 -0.8 -2.1 acyl-CoA dehydrogenase compare
PS417_06745 -0.8 -1.7 polysaccharide deacetylase compare
PS417_22825 -0.8 -2.5 hypothetical protein compare
PS417_15390 -0.8 -2.4 hypothetical protein compare
PS417_20140 -0.8 -2.4 nucleoprotein/polynucleotide-associated enzyme compare
PS417_26295 -0.8 -2.6 gamma-butyrobetaine dioxygenase compare
PS417_05975 -0.8 -0.7 chemotaxis protein CheW compare
PS417_18360 -0.8 -2.1 hypothetical protein compare
PS417_18540 -0.8 -1.9 colicin V production CvpA compare
PS417_01290 -0.8 -1.2 ADP-ribose diphosphatase compare
PS417_21760 -0.8 -1.4 hypothetical protein compare
PS417_00345 -0.8 -2.2 copper-binding protein compare
PS417_13120 -0.8 -3.1 aspartyl beta-hydroxylase compare
PS417_08380 -0.8 -2.5 ABC transporter ATP-binding protein compare
PS417_18755 -0.8 -1.1 CrtK compare
PS417_17945 -0.8 -0.8 hypothetical protein compare
PS417_05985 -0.8 -1.8 chemotaxis protein CheY compare
PS417_06675 -0.8 -2.3 ATP-dependent helicase compare
PS417_07410 -0.8 -1.6 hypothetical protein compare
PS417_27205 -0.8 -2.0 adenylate cyclase compare
PS417_20855 -0.8 -0.9 hypothetical protein compare
PS417_01915 -0.8 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27425 -0.8 -3.5 exopolyphosphatase compare
PS417_10320 -0.8 -2.0 hypothetical protein compare
PS417_08090 -0.8 -1.2 3-oxoacyl-ACP reductase compare
PS417_18040 -0.7 -1.1 general secretion pathway protein GspN compare
PS417_16180 -0.7 -2.0 MFS transporter compare
PS417_11900 -0.7 -2.8 conjugal transfer protein TraR compare
PS417_14960 -0.7 -3.5 ATPase compare
PS417_21655 -0.7 -0.9 aspartate kinase compare
PS417_11340 -0.7 -1.9 prevent-host-death protein compare
PS417_26985 -0.7 -4.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21870 -0.7 -1.4 glycerophosphodiester phosphodiesterase compare
PS417_18435 -0.7 -1.3 hypothetical protein compare
PS417_12310 -0.7 -4.1 methionine synthase compare
PS417_18160 -0.7 -1.6 YeeE/YedE compare
PS417_20585 -0.7 -3.3 chemotaxis protein compare
PS417_20705 -0.7 -3.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_05555 -0.7 -2.7 amino acid ABC transporter permease compare
PS417_18545 -0.7 -1.7 cell division protein compare
PS417_11175 -0.7 -1.6 AraC family transcriptional regulator compare
PS417_03930 -0.7 -4.1 thymidine phosphorylase compare
PS417_07095 -0.7 -3.8 histidine kinase compare
PS417_04300 -0.7 -3.0 FagA protein compare
PS417_21000 -0.7 -1.5 CrfX protein compare
PS417_04180 -0.7 -1.4 GntR family transcriptional regulator compare
PS417_04875 -0.7 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_02980 -0.7 -1.0 chemotaxis protein compare
PS417_01605 -0.7 -1.1 phosphoglycerate mutase compare
PS417_22060 -0.7 -0.9 hypothetical protein compare
PS417_01165 -0.7 -3.9 transcription accessory protein compare
PS417_02175 -0.7 -1.6 transcriptional regulator compare
PS417_10185 -0.7 -2.0 hypothetical protein compare
PS417_08990 -0.7 -1.4 ABC transporter substrate-binding protein compare
PS417_22550 -0.7 -2.2 ATP-binding protein compare
PS417_11845 -0.7 -2.2 RpiR family transcriptional regulator compare
PS417_18250 -0.7 -1.6 chemotaxis protein compare
PS417_24270 -0.7 -2.7 threonine transporter RhtB compare
PS417_26155 -0.7 -2.1 hypothetical protein compare
PS417_21270 -0.7 -1.3 translation initiation factor 2 compare
PS417_16775 -0.7 -1.8 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_19635 -0.7 -4.1 lipid kinase compare
PS417_18905 -0.7 -1.9 acyl-CoA dehydrogenase compare
PS417_20030 -0.7 -1.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_23385 -0.6 -4.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_15890 -0.6 -1.1 RNA polymerase sigma factor compare
PS417_16185 -0.6 -1.4 hypothetical protein compare
PS417_05710 -0.6 -1.7 hypothetical protein compare
PS417_19970 -0.6 -3.1 recombinase RmuC compare
PS417_21740 -0.6 -3.4 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_05865 -0.6 -1.1 hypothetical protein compare
PS417_00380 -0.6 -1.2 zinc ABC transporter ATP-binding protein compare


Specific Phenotypes

For 11 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas simiae WCS417

For stress Nalidixic acid sodium salt across organisms