Experiment set3IT039 for Pseudomonas simiae WCS417

Compare to:

LB with Nalidixic acid sodium salt 0.025 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
PS417_21830 +5.3 24.4 TetR family transcriptional regulator compare
PS417_06780 +5.0 20.7 TetR family transcriptional regulator compare
PS417_21480 +3.4 9.8 23S rRNA pseudouridylate synthase compare
PS417_03560 +3.1 7.5 GTP-binding protein compare
PS417_19725 +3.0 9.6 flagellar biosynthesis protein FlhB compare
PS417_16555 +3.0 8.7 cupin compare
PS417_08190 +2.9 23.8 membrane protein compare
PS417_21585 +2.9 17.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19825 +2.8 18.6 ATPase AAA compare
PS417_19740 +2.8 16.2 flagellar biosynthesis protein flip compare
PS417_19790 +2.8 9.3 ATP synthase compare
PS417_19795 +2.8 21.4 flagellar assembly protein FliH compare
PS417_19885 +2.7 11.2 flagellar basal body rod protein FlgG compare
PS417_03260 +2.7 11.4 5S ribosomal RNA compare
PS417_19695 +2.7 17.7 flagellar biosynthesis sigma factor compare
PS417_19730 +2.7 9.2 flagellar biosynthesis protein FliR compare
PS417_19945 +2.7 15.2 MarR family transcriptional regulator conserved
PS417_12585 +2.6 12.4 acriflavine resistance protein B conserved
PS417_19765 +2.6 17.1 flagellar hook-length control protein compare
PS417_19745 +2.5 12.5 flagellar assembly protein FliO compare
PS417_08245 +2.5 4.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19880 +2.5 15.8 flagellar basal body L-ring protein compare
PS417_21555 +2.5 15.5 flagellar hook protein FlgE compare
PS417_19785 +2.5 6.2 flagellar biogenesis protein compare
PS417_08185 +2.5 12.9 glycosyl transferase compare
PS417_21565 +2.5 8.6 flagellar basal body rod protein FlgC compare
PS417_08230 +2.4 5.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21570 +2.4 12.1 flagellar basal body rod protein FlgB compare
PS417_21630 +2.4 5.5 magnesium transporter compare
PS417_19710 +2.3 15.2 flagellar biosynthesis protein FlhA compare
PS417_19955 +2.3 7.6 hypothetical protein compare
PS417_19735 +2.2 7.5 flagellar biosynthesis protein FliQ compare
PS417_08205 +2.2 10.9 acetyltransferase compare
PS417_08195 +2.1 13.3 hypothetical protein compare
PS417_08220 +2.1 3.8 epimerase compare
PS417_08200 +2.0 6.8 hypothetical protein compare
PS417_08225 +2.0 5.5 acetolactate synthase compare
PS417_24885 +1.9 4.7 transcriptional regulator compare
PS417_19865 +1.9 11.7 flagellar hook protein FlgK compare
PS417_06510 +1.9 10.8 ATP-dependent DNA helicase DinG conserved
PS417_19805 +1.9 2.8 flagellar M-ring protein FliF compare
PS417_08155 +1.9 3.8 integration host factor subunit beta compare
PS417_19840 +1.8 11.7 flagellar cap protein FliD compare
PS417_19860 +1.7 12.4 flagellar hook protein FlgL compare
PS417_20650 +1.7 11.4 hypothetical protein compare
PS417_21560 +1.7 3.6 flagellar basal body rod modification protein FlgD compare
PS417_21595 +1.6 5.3 flagellar biosynthesis protein FlgN compare
PS417_21125 +1.6 8.3 phosphoadenosine phosphosulfate reductase compare
PS417_08180 +1.6 10.0 glycosyl transferase compare
PS417_15495 +1.6 1.8 FAD-dependent oxidoreductase compare
PS417_19830 +1.5 1.9 flagellar assembly protein FliT compare
PS417_20655 +1.5 10.1 group 1 glycosyl transferase compare
PS417_24500 +1.5 5.0 DEAD/DEAH box helicase compare
PS417_25120 +1.5 3.3 capsular biosynthesis protein compare
PS417_08165 +1.4 8.6 UDP-glucose 4-epimerase compare
PS417_19870 +1.4 3.3 flagellar rod assembly protein FlgJ compare
PS417_20105 +1.3 11.9 glycosyl transferase compare
PS417_26645 +1.3 3.3 chemotaxis protein compare
PS417_13735 +1.3 2.2 hypothetical protein compare
PS417_01405 +1.3 3.3 sugar transporter compare
PS417_20660 +1.3 8.3 hypothetical protein compare
PS417_01410 +1.3 4.6 transporter compare
PS417_15820 +1.2 1.2 universal stress protein UspA compare
PS417_26760 +1.2 8.6 oxidase compare
PS417_20670 +1.2 6.8 glycosyl transferase family 2 compare
PS417_19835 +1.1 2.5 flagellar biosynthesis protein FliS compare
PS417_01395 +1.1 9.1 biofilm formation protein PelB compare
PS417_01415 +1.1 7.3 glycosyl transferase family 1 compare
PS417_04290 +1.1 3.8 hypothetical protein compare
PS417_20610 +1.1 1.9 hypothetical protein compare
PS417_20095 +1.1 8.5 hypothetical protein compare
PS417_20930 +1.1 7.7 50S rRNA methyltransferase compare
PS417_05635 +1.1 6.7 membrane protein compare
PS417_27445 +1.1 7.6 membrane protein compare
PS417_25645 +1.1 5.0 peptidase M23 compare
PS417_19755 +1.1 2.1 flagellar motor switch protein FliM compare
PS417_01390 +1.0 5.7 PbsX family transcriptional regulator compare
PS417_22830 +1.0 7.2 DNA polymerase IV compare
PS417_24840 +1.0 1.7 hypothetical protein compare
PS417_12190 +1.0 2.5 microcin ABC transporter ATP-binding protein compare
PS417_26370 +1.0 5.4 RNA helicase compare
PS417_18000 +1.0 2.8 hypothetical protein compare
PS417_08545 +1.0 1.8 aromatic ring-opening dioxygenase LigB compare
PS417_13090 +1.0 1.9 dienelactone hydrolase compare
PS417_02560 +0.9 1.9 23S rRNA methyltransferase compare
PS417_01400 +0.9 2.8 hypothetical protein compare
PS417_24230 +0.9 5.3 ATP-dependent protease compare
PS417_26655 +0.9 4.8 chemotaxis protein compare
PS417_19705 +0.9 2.4 flagellar biosynthesis regulator FlhF compare
PS417_02435 +0.9 5.4 flagellar motor protein MotA compare
PS417_13645 +0.9 1.9 ABC transporter compare
PS417_08250 +0.9 1.4 competence protein ComEA compare
PS417_00705 +0.9 2.3 MarR family transcriptional regulator compare
PS417_19800 +0.9 2.7 flagellar motor switch protein FliG compare
PS417_07875 +0.9 1.1 hypothetical protein compare
PS417_13490 +0.9 1.8 hypothetical protein compare
PS417_25100 +0.9 5.6 hypothetical protein compare
PS417_18400 +0.9 2.3 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_26390 +0.9 2.4 acyltransferase compare
PS417_15705 +0.8 2.2 nitrate reductase compare
PS417_17840 +0.8 2.4 betaine-aldehyde dehydrogenase compare
PS417_20090 +0.8 4.4 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_22065 +0.8 4.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_13510 +0.8 1.1 polyketide cyclase compare
PS417_20100 +0.8 4.4 hypothetical protein compare
PS417_12215 +0.8 4.9 lytic transglycosylase compare
PS417_09335 +0.8 2.0 HAD family hydrolase compare
PS417_17065 +0.8 1.8 catalase compare
PS417_09205 +0.8 4.7 membrane protein compare
PS417_06150 +0.8 2.2 SAM-dependent methlyltransferase compare
PS417_25825 +0.8 2.3 sulfurtransferase compare
PS417_12520 +0.8 2.0 hypothetical protein compare
PS417_12705 +0.8 2.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) compare
PS417_05535 +0.8 1.5 Fis family transcriptional regulator compare
PS417_25105 +0.8 2.9 hypothetical protein compare
PS417_03000 +0.8 3.6 translation initiation factor Sui1 compare
PS417_01420 +0.8 5.0 histidine kinase compare
PS417_27315 +0.8 1.3 hypothetical protein compare
PS417_01875 +0.8 1.7 polyhydroxyalkanoic acid system protein compare
PS417_13205 +0.8 1.4 isochorismate-pyruvate lyase compare
PS417_12375 +0.8 1.0 serine/threonine protein phosphatase compare
PS417_15665 +0.8 1.9 hypothetical protein compare
PS417_27990 +0.8 1.2 hypothetical protein compare
PS417_19350 +0.8 3.3 GTP cyclohydrolase compare
PS417_24580 +0.8 3.8 pseudouridine synthase compare
PS417_26660 +0.8 3.1 protein PilI compare
PS417_23215 +0.7 3.3 RNA methyltransferase compare
PS417_04080 +0.7 1.4 peptide ABC transporter substrate-binding protein compare
PS417_12855 +0.7 3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25390 +0.7 4.1 MFS transporter compare
PS417_21680 +0.7 2.6 succinylglutamate desuccinylase compare
PS417_09505 +0.7 3.3 hypothetical protein compare
PS417_13395 +0.7 4.2 phosphoglucomutase compare
PS417_20115 +0.7 2.3 hypothetical protein compare
PS417_01580 +0.7 0.8 imidazole glycerol phosphate synthase compare
PS417_23810 +0.7 5.7 acetolactate synthase 3 catalytic subunit compare
PS417_26750 +0.7 2.9 homoserine acetyltransferase compare
PS417_22565 +0.7 1.2 formyltetrahydrofolate deformylase compare
PS417_10840 +0.7 2.0 amidase compare
PS417_19760 +0.7 2.3 flagellar basal body protein FliL compare
PS417_09200 +0.7 3.4 ABC transporter compare
PS417_01210 +0.7 4.9 hypothetical protein compare
PS417_01510 +0.7 2.1 hypothetical protein compare
PS417_16320 +0.7 1.3 protein tyrosine phosphatase compare
PS417_09865 +0.7 1.7 hypothetical protein compare
PS417_06375 +0.7 1.0 deoxycytidine triphosphate deaminase compare
PS417_15475 +0.7 2.2 IclR family transcriptional regulator compare
PS417_16950 +0.7 2.4 fimbrial protein compare
PS417_16640 +0.7 2.3 toxin compare
PS417_10720 +0.7 3.2 chemotaxis protein CheY compare
PS417_02440 +0.7 2.4 flagellar motor protein MotB compare
PS417_20125 +0.7 2.5 phosphoribosylglycinamide formyltransferase compare
PS417_05660 +0.7 4.0 (4Fe-4S)-binding protein compare
PS417_17785 +0.7 3.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_10245 +0.7 1.2 hypothetical protein compare
PS417_19295 +0.7 1.7 hypothetical protein compare
PS417_19850 +0.7 4.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_27045 +0.7 1.3 ATPase compare
PS417_05365 +0.7 1.5 FAD-binding protein compare
PS417_08025 +0.7 0.9 acetylornithine aminotransferase compare
PS417_25765 +0.7 1.6 transcriptional regulator compare
PS417_20685 +0.7 1.5 CAAX protease compare
PS417_04530 +0.7 1.7 glycerate dehydrogenase compare
PS417_17120 +0.7 2.6 protein kinase compare
PS417_26650 +0.7 4.6 histidine kinase compare
PS417_00355 +0.7 2.7 metal ABC transporter permease compare
PS417_05495 +0.7 3.0 structural protein MipA compare
PS417_01795 +0.7 5.0 glucosyltransferase MdoH compare
PS417_07565 +0.7 2.0 hypothetical protein compare
PS417_08940 +0.7 1.7 thioesterase compare
PS417_21990 +0.7 1.5 LacI family transcriptional regulator compare
PS417_14100 +0.6 2.4 alpha-ketoglutarate-dependent dioxygenase compare
PS417_10680 +0.6 2.0 enoyl-CoA hydratase compare
PS417_11125 +0.6 2.2 hypothetical protein compare
PS417_21420 +0.6 5.3 aminodeoxychorismate lyase compare
PS417_23805 +0.6 3.0 acetolactate synthase 3 regulatory subunit compare
PS417_19960 +0.6 1.8 membrane protein compare
PS417_18885 +0.6 1.2 GntR family transcriptional regulator compare
PS417_16005 +0.6 1.6 ATPase compare
PS417_09615 +0.6 2.2 glycosyl transferase family 1 compare
PS417_14235 +0.6 1.5 hypothetical protein compare
PS417_25650 +0.6 1.6 anhydro-N-acetylmuramic acid kinase compare
PS417_18100 +0.6 3.3 iron ABC transporter compare
PS417_02925 +0.6 2.8 membrane protein compare
PS417_22210 +0.6 1.2 AraC family transcriptional regulator compare
PS417_22520 +0.6 1.9 histidine kinase compare
PS417_16560 +0.6 1.7 GNAT family acetyltransferase compare
PS417_23670 +0.6 2.1 Muconate cycloisomerase (EC 5.5.1.1) (from data) compare
PS417_14710 +0.6 1.1 isochorismatase compare
PS417_00510 +0.6 0.9 membrane protein compare
PS417_21055 +0.6 1.9 threonyl-tRNA synthetase compare
PS417_17125 +0.6 2.1 transcriptional regulator compare
PS417_09680 +0.6 1.1 hydrolase compare
PS417_11420 +0.6 1.6 potassium transporter KefB compare
PS417_19065 +0.6 0.8 monooxygenase compare
PS417_00225 +0.6 1.2 hypothetical protein compare
PS417_12135 +0.6 2.1 peptidylprolyl isomerase compare
PS417_27935 +0.6 1.2 type VI secretion protein compare
PS417_21730 +0.6 2.2 peptidase M14 compare
PS417_16080 +0.6 1.8 AraC family transcriptional regulator compare


Specific Phenotypes

For 11 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas simiae WCS417

For stress Nalidixic acid sodium salt across organisms