Experiment set3IT039 for Pseudomonas simiae WCS417
LB with Nalidixic acid sodium salt 0.025 mg/ml
Group: stressMedia: LB + Nalidixic acid sodium salt (0.025 mg/ml)
Culturing: fluoroDangl_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 3/2/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1165 E1,E2
Specific Phenotypes
For 11 genes in this experiment
For stress Nalidixic acid sodium salt in Pseudomonas simiae WCS417
For stress Nalidixic acid sodium salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid biosynthesis
- Purine metabolism
- Pyrimidine metabolism
- Tyrosine metabolism
- Benzoate degradation via hydroxylation
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Nucleotide sugars metabolism
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Porphyrin and chlorophyll metabolism
- Limonene and pinene degradation
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
Pathway | #Steps | #Present | #Specific |
---|---|---|---|
UDP-N-acetyl-β-L-fucosamine biosynthesis | 4 | 2 | 1 |
UDP-N-acetyl-β-L-quinovosamine biosynthesis | 4 | 1 | 1 |
CMP-pseudaminate biosynthesis | 6 | 1 | 1 |
CMP-diacetamido-8-epilegionaminic acid biosynthesis | 7 | 1 | 1 |
superpathway of UDP-N-acetylglucosamine-derived O-antigen building blocks biosynthesis | 24 | 9 | 1 |