Experiment set3IT039 for Agrobacterium fabrum C58

Compare to:

D-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu3707 -6.6 -4.5 phosphoserine aminotransferase compare
Atu0017 -6.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1750 -5.9 -5.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0030 -5.8 -2.5 phosphocarrier protein HPr compare
Atu3706 -5.7 -10.3 D-3-phosphoglycerate dehydrogenase compare
Atu3739 -5.6 -3.1 phosphoglycerate kinase compare
Atu1687 -5.6 -13.8 anthranilate phosphoribosyltransferase compare
Atu2289 -5.5 -22.1 anthranilate synthase component I and II compare
Atu0043 -5.5 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu0099 -5.5 -15.3 prephenate dehydratase compare
Atu2650 -5.5 -15.9 glycerol-3-phosphate dehydrogenase compare
Atu0678 -5.4 -7.4 histidyl-tRNA synthetase compare
Atu0972 -5.4 -7.9 lipA protein compare
Atu0679 -5.4 -7.3 ATP phosphoribosyltransferase compare
Atu0038 -5.4 -7.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1688 -5.3 -8.9 indole-3-glycerol-phosphate synthase compare
Atu2710 -5.3 -8.1 hypothetical protein compare
Atu2036 -5.3 -18.4 acetolactate synthase III, large subunit compare
Atu4505 -5.3 -13.6 LacI family transcriptional regulator compare
Atu1140 -5.2 -5.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2718 -5.1 -9.9 homoserine O-succinyltransferase compare
Atu2709 -5.1 -24.5 3-isopropylmalate dehydratase, large subunit compare
Atu2264 -5.1 -14.9 2-isopropylmalate synthase compare
Atu0647 -5.0 -9.6 phosphoribosylamine--glycine ligase compare
Atu2791 -5.0 -10.6 3-isopropylmalate dehydrogenase compare
Atu0537 -5.0 -8.9 histidinol dehydrogenase compare
Atu0432 -4.9 -11.8 O-succinylhomoserine sulfhydrylase compare
Atu0035 -4.9 -13.1 phosphoenolpyruvate carboxykinase compare
Atu1205 -4.8 -17.6 threonine dehydratase compare
Atu2040 -4.7 -8.9 phosphoserine phosphatase compare
Atu3293 -4.6 -12.8 D-amino acid dehydrogenase small subunit conserved
Atu3740 -4.5 -13.2 fructose bisphosphate aldolase compare
Atu1308 -4.4 -9.2 aspartate carbamoyl transferase catalytic subunit compare
Atu1588 -4.3 -10.7 homoserine dehydrogenase compare
Atu3885 -4.3 -14.1 inositol monophosphatase compare
Atu1620 -4.3 -15.1 triosephosphate isomerase compare
Atu2747 -4.3 -16.2 hypothetical protein compare
Atu1141 -4.3 -10.6 Phosphoribosylglycinamide synthetase compare
Atu0769 -4.3 -4.0 protoheme IX farnesyltransferase compare
Atu0298 -4.2 -10.5 orotidine 5 compare
Atu3469 -4.2 -4.1 phosphoglyceromutase compare
Atu1075 -4.2 -9.0 amidophosphoribosyltransferase compare
Atu2790 -4.2 -4.1 3-isopropylmalate dehydratase, small subunit compare
Atu0399 -4.2 -10.0 dihydroorotase compare
Atu1307 -4.1 -6.3 dihydroorotase compare
Atu0486 -4.1 -9.0 dihydroorotate dehydrogenase compare
Atu0039 -4.0 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0041 -3.9 -4.6 glutamine amidotransferase compare
Atu1844 -3.9 -3.9 Phosphoribosylformylglycinamidine synthetase compare
Atu0400 -3.8 -6.3 orotate phosphoribosyltransferase compare
Atu1686 -3.8 -19.7 peptidyl-prolyl cis-trans isomerse D compare
Atu2115 -3.8 -16.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2015 -3.7 -14.6 aminotransferase compare
Atu3754 -3.7 -11.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1850 -3.6 -5.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1845 -3.6 -6.3 phosphoribosylformylglycinamidine synthase I compare
Atu1030 -3.5 -2.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3291 -3.4 -8.8 Lpr family transcriptional regulator compare
Atu0346 -3.3 -4.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3755 -3.3 -7.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4019 -3.3 -11.8 two component response regulator compare
Atu1456 -3.2 -13.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3784 -3.2 -23.9 glutamate synthase large subunit compare
Atu4018 -3.1 -13.3 two component sensor kinase compare
Atu3783 -3.1 -17.7 glutamate synthase subunit beta compare
Atu0040 -3.0 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3292 -3.0 -12.4 alanine racemase conserved
Atu1685 -2.9 -2.0 hypothetical protein compare
Atu1454 -2.8 -10.3 siroheme synthase compare
Atu3483 -2.7 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1589 -2.5 -5.9 aminotransferase, class I compare
Atu1446 -2.4 -3.7 two component response regulator compare
Atu1445 -2.4 -6.7 two component sensor kinase compare
Atu2548 -2.3 -14.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0687 -2.3 -3.8 hypothetical protein compare
Atu3712 -2.3 -3.3 hypothetical protein compare
Atu3482 -2.3 -7.8 pantoate--beta-alanine ligase compare
Atu3634 -2.3 -7.9 penicillin-binding protein dacf precursor compare
Atu1577 -2.2 -5.8 ABC transporter, substrate binding protein (amino acid) conserved
Atu1580 -2.2 -10.3 ABC transporter, nucleotide binding/ATPase protein (amino acid) conserved
Atu1359 -2.1 -1.9 dnaK deletion suppressor protein compare
Atu1578 -2.1 -7.9 ABC transporter, membrane spanning protein (amino acid) conserved
Atu0332 -2.1 -12.5 RNA polymerase sigma-54 factor compare
Atu0723 -2.1 -2.9 FAD dependent oxidoreductase compare
Atu1579 -2.1 -10.1 ABC transporter, membrane spanning protein (amino acid) conserved
Atu1455 -2.1 -2.8 hypothetical protein compare
Atu1457 -2.0 -3.1 hypothetical protein compare
Atu4096 -2.0 -9.0 nicotinate-nucleotide pyrophosphorylase compare
Atu2155 -1.9 -14.9 methionine synthase compare
Atu8167 -1.9 -12.4 putative transmembrane protein compare
Atu0029 -1.8 -7.0 S-adenosylhomocysteine hydrolase compare
Atu3731 -1.8 -8.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu4711 -1.7 -5.3 two component sensor kinase compare
Atu2722 -1.6 -10.3 porin compare
Atu3290 -1.6 -6.1 phosphomethylpyrimidine kinase compare
Atu3289 -1.6 -4.4 thiamine-phosphate pyrophosphorylase compare
Atu0031 -1.5 -2.0 PTS system, IIA component compare
Atu3763 -1.5 -2.0 hypothetical protein compare
Atu1774 -1.5 -8.4 ABC transporter, substrate binding protein (peptide) compare
Atu3298 -1.4 -9.2 C4-dicarboxylate transporter DctA compare
Atu2569 -1.4 -9.8 thiamine biosynthesis protein compare
Atu3296 -1.4 -7.8 two component response regulator for C4-dicarboxylate transport compare
Atu6114 -1.4 -2.2 hypothetical protein compare
Atu4098 -1.3 -7.9 quinolinate synthetase compare
Atu3288 -1.3 -6.8 hydroxyethylthiazole kinase compare
Atu8115 -1.3 -4.3 Hypothetical Protein compare
Atu0876 -1.3 -2.4 superoxide dismutase compare
Atu5513 -1.3 -1.4 cold shock protein compare
Atu1439 -1.3 -2.9 hypothetical protein compare
Atu2207 -1.3 -2.7 two component sensor kinase compare
Atu3997 -1.3 -10.5 biotin synthetase compare
Atu3008 -1.3 -1.3 hypothetical protein compare
Atu1462 -1.2 -8.6 glycine cleavage system protein P2 compare
Atu5045 -1.2 -1.4 hypothetical protein compare
Atu0953 -1.2 -1.6 hypothetical protein compare
Atu3730 -1.2 -1.4 hypothetical protein compare
Atu3297 -1.2 -7.7 two component sensor kinase for C4-dicarboxylate transport compare
Atu0941 -1.2 -1.3 hypothetical protein compare
Atu1629 -1.2 -1.6 transcriptional regulator, ArsR family compare
Atu1163 -1.2 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8162 -1.1 -1.8 hypothetical protein compare
Atu0641 -1.1 -3.6 hypothetical protein compare
Atu4173 -1.1 -3.0 phosphoenolpyruvate-protein phosphotransferase compare
Atu0977 -1.1 -4.4 serine protease DO-like protease compare
Atu1463 -1.1 -4.2 glycine cleavage system component H compare
Atu2441 -1.0 -3.3 RNA methylase compare
Atu4097 -1.0 -6.4 L-aspartate oxidase compare
Atu0190 -1.0 -4.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1028 -1.0 -2.7 hypothetical protein compare
Atu2489 -1.0 -5.6 hypothetical protein compare
Atu1705 -1.0 -2.8 SEC-independent protein translocase protein compare
Atu1076 -1.0 -3.9 colicin V production protein compare
Atu1364 -1.0 -4.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1149 -1.0 -1.5 adenylate cyclase compare
Atu2376 -0.9 -0.7 hypothetical protein compare
Atu2113 -0.9 -2.1 N-acetylmuramoyl-L-alanine amidase compare
Atu4217 -0.9 -2.0 TetR family transcriptional regulator compare
Atu0388 -0.9 -6.8 two component sensor kinase compare
Atu4346 -0.9 -3.4 hypothetical protein compare
Atu0434 -0.9 -2.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0421 -0.9 -1.4 ABC transporter, membrane spanning protein compare
Atu1380 -0.9 -3.9 zinc metallopeptidase compare
Atu1748 -0.9 -4.3 NIFU-like protein compare
Atu0331 -0.9 -2.0 sigma-54 modulation protein compare
Atu3572 -0.8 -6.1 transcriptional regulator compare
Atu0886 -0.8 -1.3 hypothetical protein compare
Atu0419 -0.8 -1.1 two component sensor kinase compare
Atu0188 -0.8 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu2335 -0.8 -2.2 hypothetical protein compare
Atu2640 -0.8 -3.7 hypothetical protein compare
Atu2439 -0.8 -0.9 hypothetical protein compare
Atu8088 -0.8 -2.1 hypothetical protein compare
Atu0048 -0.8 -5.4 hypothetical protein compare
Atu3287 -0.8 -2.9 thiamine biosynthesis associated protein compare
Atu1464 -0.8 -3.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu4063 -0.8 -4.3 O-linked GlcNAc transferase compare
Atu2125 -0.7 -1.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu0291 -0.7 -4.5 hypothetical protein compare
Atu2163 -0.7 -1.6 hypothetical protein compare
Atu0759 -0.7 -4.1 hypothetical protein compare
Atu2425 -0.7 -5.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu8056 -0.7 -1.1 hypothetical protein compare
Atu2043 -0.7 -4.8 htrA family protein compare
Atu0931 -0.7 -4.8 penicillin binding protein compare
Atu1373 -0.7 -3.8 hypothetical protein compare
Atu1327 -0.7 -2.5 NADH-ubiquinone oxidoreductase compare
Atu1339 -0.7 -1.7 ribonuclease E compare
Atu0659 -0.6 -2.6 NTP pyrophosphohydrolase, MutT family compare
Atu8082 -0.6 -1.9 hypothetical protein compare
Atu2205 -0.6 -2.9 transcriptional regulator, MarR family compare
Atu8144 -0.6 -1.6 hypothetical protein compare
Atu4643 -0.6 -2.9 hypothetical protein compare
Atu0845 -0.6 -3.3 hypothetical protein compare
Atu3908 -0.6 -4.4 GntR family transcriptional regulator compare
Atu8195 -0.6 -2.2 hypothetical protein compare
Atu0142 -0.6 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu2824 -0.6 -3.2 hypothetical protein compare
Atu1581 -0.6 -1.1 hypothetical protein compare
Atu8203 -0.6 -1.8 hypothetical protein compare
Atu0784 -0.6 -1.5 hypothetical protein compare
Atu0141 -0.6 -0.8 cytochrome O ubiquinol oxidase subunit I compare
Atu3014 -0.6 -1.1 hypothetical protein compare
Atu0926 -0.6 -2.6 hypothetical protein compare
Atu2808 -0.6 -3.8 cobyric acid synthase compare
Atu2428 -0.6 -4.1 exopolysaccharide production protein PssB compare
Atu0184 -0.6 -1.7 glucokinase compare
Atu2424 -0.6 -3.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2554 -0.6 -1.3 lysyl-tRNA synthetase compare
Atu0768 -0.6 -3.9 cytochrome-c oxidase chain I compare
Atu3012 -0.6 -1.1 hypothetical protein compare
Atu0036 -0.6 -1.9 hypothetical protein compare
Atu4001 -0.6 -3.9 3-oxoacyl-ACP synthase compare
Atu2772 -0.6 -3.0 Invasion protein A compare
Atu0130 -0.6 -2.6 cytidine deaminase compare
Atu5010 -0.6 -1.3 hypothetical protein compare
Atu4869 -0.6 -1.8 hypothetical protein compare
Atu3468 -0.5 -0.7 hypothetical protein compare
Atu4176 -0.5 -3.0 hypothetical protein compare
Atu4226 -0.5 -4.0 transcriptional regulator compare
Atu4702 -0.5 -4.0 GntR family transcriptional regulator compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source D-Alanine in Agrobacterium fabrum C58

For nitrogen source D-Alanine across organisms