Experiment set3IT038 for Pseudomonas simiae WCS417

Compare to:

LB with Nalidixic acid sodium salt 0.015 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_06770 -5.1 -7.8 multidrug transporter compare
PS417_06775 -5.0 -7.3 antibiotic transporter compare
PS417_23770 -4.5 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_04380 -4.1 -3.0 ABC transporter permease compare
PS417_04390 -4.0 -8.4 toluene tolerance protein compare
PS417_07710 -3.9 -11.7 membrane protein compare
PS417_04385 -3.7 -8.6 organic solvent ABC transporter substrate-binding protein compare
PS417_05815 -3.6 -5.0 recombinase RecA compare
PS417_04375 -3.3 -4.7 ABC transporter ATP-binding protein compare
PS417_20985 -2.9 -5.1 porin compare
PS417_02270 -2.9 -6.7 carbamoyltransferase compare
PS417_12595 -2.8 -2.5 transcriptional regulator compare
PS417_28070 -2.7 -7.2 phosphate ABC transporter ATP-binding protein compare
PS417_22450 -2.7 -2.4 ATP-dependent DNA helicase RuvA compare
PS417_15120 -2.6 -9.3 chromosome segregation protein SMC compare
PS417_04650 -2.6 -2.7 D-alanine--D-alanine ligase compare
PS417_28080 -2.6 -13.7 phosphate ABC transporter permease compare
PS417_08090 -2.6 -1.4 3-oxoacyl-ACP reductase compare
PS417_16490 -2.5 -3.0 cell division protein FtsK compare
PS417_02280 -2.3 -2.8 GlcNAc-PI de-N-acetylase compare
PS417_15115 -2.1 -3.8 exonuclease SbcD compare
PS417_23095 -2.0 -1.9 exodeoxyribonuclease compare
PS417_02555 -1.9 -14.8 exoribonuclease R compare
PS417_27245 -1.9 -4.5 aminotransferase DegT compare
PS417_28085 -1.9 -9.0 phosphate-binding protein compare
PS417_19095 -1.8 -2.1 hypothetical protein compare
PS417_07510 -1.7 -5.6 aspartyl beta-hydroxylase compare
PS417_27870 -1.7 -5.2 ATP-dependent DNA helicase RecG compare
PS417_24835 -1.6 -3.8 hypothetical protein compare
PS417_02255 -1.5 -3.4 lipopolysaccharide kinase compare
PS417_22445 -1.5 -3.8 ATP-dependent DNA helicase RuvB compare
PS417_10010 -1.5 -2.1 Replication protein P compare
PS417_23725 -1.4 -2.1 methylmalonate-semialdehyde dehydrogenase compare
PS417_17835 -1.4 -4.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_05975 -1.4 -1.2 chemotaxis protein CheW compare
PS417_24155 -1.4 -2.6 ATP-binding protein compare
PS417_16715 -1.4 -1.9 DoxX family protein compare
PS417_27865 -1.4 -1.7 LysR family transcriptional regulator compare
PS417_08580 -1.4 -4.7 histidine kinase compare
PS417_06530 -1.3 -3.3 membrane protein compare
PS417_28515 -1.3 -5.5 16S rRNA methyltransferase compare
PS417_23900 -1.3 -7.2 poly(A) polymerase compare
PS417_05695 -1.3 -4.7 transcriptional regulator compare
PS417_19600 -1.3 -1.5 exonuclease compare
PS417_18355 -1.3 -5.7 DNA-binding protein compare
PS417_07470 -1.3 -1.6 hypothetical protein compare
PS417_02895 -1.2 -2.0 precorrin-6Y C5,15-methyltransferase compare
PS417_18780 -1.2 -1.6 flavin reductase compare
PS417_05515 -1.2 -5.2 hypothetical protein compare
PS417_02385 -1.2 -1.8 esterase compare
PS417_01290 -1.1 -1.9 ADP-ribose diphosphatase compare
PS417_15090 -1.1 -2.7 hypothetical protein compare
PS417_07875 -1.1 -1.0 hypothetical protein compare
PS417_05010 -1.1 -2.9 IclR family transcriptional regulator compare
PS417_05820 -1.1 -2.8 recombinase RecX compare
PS417_23950 -1.1 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_04590 -1.0 -6.3 methyltransferase compare
PS417_14065 -1.0 -5.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22575 -1.0 -5.0 exonuclease I compare
PS417_19675 -1.0 -3.0 chemotaxis protein CheY compare
PS417_04220 -1.0 -1.4 4-carboxymuconolactone decarboxylase compare
PS417_15390 -1.0 -2.2 hypothetical protein compare
PS417_00960 -1.0 -2.3 transcriptional regulator compare
PS417_06685 -1.0 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_02210 -1.0 -5.2 diguanylate cyclase compare
PS417_13820 -1.0 -3.9 UDP-glucose 6-dehydrogenase compare
PS417_18350 -1.0 -3.5 hypothetical protein compare
PS417_17215 -1.0 -3.2 peptidylprolyl isomerase compare
PS417_13805 -1.0 -5.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_06370 -1.0 -1.5 cold-shock protein compare
PS417_21000 -1.0 -2.0 CrfX protein compare
PS417_28075 -0.9 -2.9 phosphate ABC transporter permease compare
PS417_15030 -0.9 -1.2 short-chain dehydrogenase compare
PS417_16855 -0.9 -1.7 cation:proton antiporter compare
PS417_01510 -0.9 -1.6 hypothetical protein compare
PS417_09325 -0.9 -3.1 peptidase S41 compare
PS417_11825 -0.9 -1.8 transcriptional regulator compare
PS417_04305 -0.9 -1.3 aspartate ammonia-lyase compare
PS417_07140 -0.9 -2.8 peptidase M48 compare
PS417_14980 -0.9 -1.0 universal stress protein UspA compare
PS417_20585 -0.9 -4.6 chemotaxis protein compare
PS417_13790 -0.9 -3.8 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_02720 -0.9 -1.2 TetR family transcriptional regulator compare
PS417_22825 -0.9 -4.5 hypothetical protein compare
PS417_23160 -0.9 -2.1 50S rRNA methyltransferase compare
PS417_09160 -0.9 -2.1 GNAT family acetyltransferase compare
PS417_04270 -0.9 -5.2 ribonuclease G compare
PS417_26985 -0.9 -4.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_06895 -0.8 -2.5 DNA-binding protein compare
PS417_19625 -0.8 -2.4 histidine kinase compare
PS417_17405 -0.8 -1.7 AraC family transcriptional regulator compare
PS417_22300 -0.8 -1.3 LTXXQ domain protein compare
PS417_15100 -0.8 -1.5 BatB protein compare
PS417_12935 -0.8 -2.2 RNA polymerase sigma factor compare
PS417_24710 -0.8 -5.8 lipoprotein compare
PS417_12390 -0.8 -1.2 hypothetical protein compare
PS417_01715 -0.8 -1.1 hypothetical protein compare
PS417_06350 -0.8 -4.2 stationary phase survival protein SurE compare
PS417_06355 -0.8 -1.4 protein-L-isoaspartate O-methyltransferase compare
PS417_17070 -0.8 -1.1 RNA polymerase subunit sigma-24 compare
PS417_16535 -0.8 -2.0 NUDIX hydrolase compare
PS417_18690 -0.8 -1.6 aromatic amino acid aminotransferase compare
PS417_23580 -0.8 -1.2 peptidylprolyl isomerase compare
PS417_22115 -0.8 -2.5 transcriptional regulator compare
PS417_14960 -0.8 -4.5 ATPase compare
PS417_13800 -0.8 -2.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_06835 -0.8 -1.7 phospholipase compare
PS417_18365 -0.8 -4.7 hypothetical protein compare
PS417_27290 -0.7 -1.1 hypothetical protein compare
PS417_09730 -0.7 -1.8 adenylylsulfate kinase compare
PS417_17240 -0.7 -2.3 trigger factor compare
PS417_09920 -0.7 -2.5 hypothetical protein compare
PS417_21100 -0.7 -4.6 alpha-L-glutamate ligase compare
PS417_22895 -0.7 -4.6 tyrosine recombinase XerD compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_22945 -0.7 -1.9 phosphoribosylglycinamide formyltransferase compare
PS417_08990 -0.7 -2.6 ABC transporter substrate-binding protein compare
PS417_13795 -0.7 -3.4 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_13305 -0.7 -0.8 hypothetical protein compare
PS417_15095 -0.7 -1.9 hypothetical protein compare
PS417_20850 -0.7 -3.7 hypothetical protein compare
PS417_14850 -0.7 -1.7 hypothetical protein compare
PS417_07095 -0.7 -3.3 histidine kinase compare
PS417_10040 -0.7 -0.8 MFS transporter compare
PS417_20855 -0.7 -0.6 hypothetical protein compare
PS417_28325 -0.7 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_09235 -0.7 -0.7 molecular chaperone compare
PS417_09655 -0.7 -1.2 RNA polymerase sigma factor compare
PS417_11950 -0.7 -1.0 hypothetical protein compare
PS417_15640 -0.7 -1.9 DNA methylase compare
PS417_10425 -0.7 -1.4 hypothetical protein compare
PS417_17190 -0.7 -2.9 MarR family transcriptional regulator compare
PS417_18635 -0.7 -1.8 4-hydroxybenzoyl-CoA thioesterase compare
PS417_27590 -0.7 -4.3 hypothetical protein compare
PS417_15435 -0.7 -1.8 metallophosphatase compare
PS417_14815 -0.7 -1.7 diguanylate cyclase compare
PS417_17805 -0.7 -1.6 microcin B17 processing protein McbC compare
PS417_04170 -0.7 -2.0 stringent starvation protein A compare
PS417_16915 -0.6 -2.6 hemolysin D compare
PS417_00065 -0.6 -1.0 3-methyladenine DNA glycosylase compare
PS417_02805 -0.6 -1.0 urease subunit gamma compare
PS417_08410 -0.6 -1.1 hypothetical protein compare
PS417_24615 -0.6 -0.7 hypothetical protein compare
PS417_23045 -0.6 -2.2 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_13120 -0.6 -2.7 aspartyl beta-hydroxylase compare
PS417_15465 -0.6 -1.4 carboxynorspermidine decarboxylase compare
PS417_11900 -0.6 -3.3 conjugal transfer protein TraR compare
PS417_22580 -0.6 -1.5 membrane protein compare
PS417_18545 -0.6 -1.8 cell division protein compare
PS417_14400 -0.6 -1.2 hypothetical protein compare
PS417_24305 -0.6 -3.8 DNA repair protein RadA compare
PS417_27795 -0.6 -0.7 orotate phosphoribosyltransferase compare
PS417_11555 -0.6 -2.3 (2Fe-2S)-binding protein compare
PS417_24780 -0.6 -4.6 peptidase C13 compare
PS417_19630 -0.6 -1.3 LuxR family transcriptional regulator compare
PS417_07035 -0.6 -3.4 uracil-DNA glycosylase compare
PS417_01825 -0.6 -1.8 chemotaxis protein compare
PS417_22190 -0.6 -3.1 diguanylate cyclase compare
PS417_03920 -0.6 -1.6 dephospho-CoA kinase compare
PS417_07870 -0.6 -1.3 hypothetical protein compare
PS417_00455 -0.6 -1.6 hypothetical protein compare
PS417_07940 -0.6 -1.6 hypothetical protein compare
PS417_09740 -0.6 -1.9 RNA polymerase subunit sigma-24 compare
PS417_24070 -0.6 -3.1 recombination and repair protein conserved
PS417_01590 -0.6 -1.0 polysaccharide deacetylase compare
PS417_19635 -0.6 -3.3 lipid kinase compare
PS417_27425 -0.6 -2.8 exopolyphosphatase compare
PS417_27340 -0.6 -1.9 NADPH:quinone oxidoreductase compare
PS417_07170 -0.6 -2.9 hypothetical protein compare
PS417_09210 -0.6 -1.0 TetR family transcriptional regulator compare
PS417_10655 -0.6 -1.7 LuxR family transcriptional regulator compare
PS417_05830 -0.6 -1.5 hypothetical protein compare
PS417_20520 -0.6 -1.3 3-phosphoglycerate kinase compare
PS417_03930 -0.6 -3.3 thymidine phosphorylase compare
PS417_28140 -0.6 -2.0 asparaginase compare
PS417_15085 -0.6 -1.8 ATPase AAA compare
PS417_06995 -0.6 -2.7 tRNA-Gly compare
PS417_14200 -0.6 -1.4 hypothetical protein compare
PS417_12525 -0.6 -2.2 hypothetical protein compare
PS417_18540 -0.6 -1.6 colicin V production CvpA compare
PS417_02065 -0.6 -3.3 membrane protein compare
PS417_06395 -0.6 -1.0 amino acid transporter compare
PS417_23390 -0.6 -3.7 ubiquinol oxidase subunit II compare
PS417_10290 -0.6 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_08125 -0.6 -0.8 prephenate dehydratase compare
PS417_07865 -0.6 -1.5 hypothetical protein compare
PS417_08730 -0.6 -1.1 cytochrome C compare
PS417_10185 -0.5 -1.5 hypothetical protein compare
PS417_06375 -0.5 -0.6 deoxycytidine triphosphate deaminase compare
PS417_11300 -0.5 -2.3 general secretion pathway protein GspE compare
PS417_23360 -0.5 -0.7 hypothetical protein compare
PS417_10480 -0.5 -0.9 glutathione S-transferase compare
PS417_12955 -0.5 -2.9 sulfonate ABC transporter substrate-binding protein compare
PS417_11830 -0.5 -1.0 membrane protein compare
PS417_26115 -0.5 -2.5 glutamine ABC transporter ATP-binding protein compare
PS417_11185 -0.5 -1.8 dimethylallyltransferase compare
PS417_15895 -0.5 -1.1 iron dicitrate transport regulator FecR compare
PS417_03270 -0.5 -3.4 paraquat-inducible protein A compare
PS417_25175 -0.5 -1.1 hypothetical protein compare
PS417_11225 -0.5 -2.1 glyoxalase compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas simiae WCS417

For stress Nalidixic acid sodium salt across organisms