Experiment set3IT038 for Pseudomonas simiae WCS417

Compare to:

LB with Nalidixic acid sodium salt 0.015 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
PS417_21830 +3.2 18.8 TetR family transcriptional regulator compare
PS417_06780 +2.8 9.6 TetR family transcriptional regulator compare
PS417_08245 +2.6 4.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19790 +2.4 6.8 ATP synthase compare
PS417_21480 +2.4 7.3 23S rRNA pseudouridylate synthase compare
PS417_19825 +2.4 18.8 ATPase AAA compare
PS417_19795 +2.2 17.9 flagellar assembly protein FliH compare
PS417_19785 +2.2 6.6 flagellar biogenesis protein compare
PS417_19740 +2.1 13.5 flagellar biosynthesis protein flip compare
PS417_21565 +2.1 10.9 flagellar basal body rod protein FlgC compare
PS417_08190 +2.1 17.2 membrane protein compare
PS417_21570 +2.1 11.7 flagellar basal body rod protein FlgB compare
PS417_19725 +2.1 10.6 flagellar biosynthesis protein FlhB compare
PS417_21585 +2.0 11.7 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19885 +2.0 5.8 flagellar basal body rod protein FlgG compare
PS417_10245 +2.0 4.0 hypothetical protein compare
PS417_19730 +2.0 4.9 flagellar biosynthesis protein FliR compare
PS417_19695 +2.0 11.4 flagellar biosynthesis sigma factor compare
PS417_19765 +2.0 13.8 flagellar hook-length control protein compare
PS417_19880 +2.0 12.9 flagellar basal body L-ring protein compare
PS417_19735 +1.9 7.0 flagellar biosynthesis protein FliQ compare
PS417_19745 +1.9 14.8 flagellar assembly protein FliO compare
PS417_19945 +1.9 11.1 MarR family transcriptional regulator conserved
PS417_21555 +1.8 13.2 flagellar hook protein FlgE compare
PS417_12585 +1.8 9.9 acriflavine resistance protein B conserved
PS417_08230 +1.8 5.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08225 +1.8 8.4 acetolactate synthase compare
PS417_19710 +1.7 11.3 flagellar biosynthesis protein FlhA compare
PS417_19865 +1.7 11.1 flagellar hook protein FlgK compare
PS417_08205 +1.7 6.4 acetyltransferase compare
PS417_08185 +1.6 8.2 glycosyl transferase compare
PS417_16555 +1.5 4.3 cupin compare
PS417_08200 +1.5 5.7 hypothetical protein compare
PS417_03560 +1.5 5.4 GTP-binding protein compare
PS417_20635 +1.5 2.2 ABC transporter ATP-binding protein compare
PS417_19840 +1.5 9.9 flagellar cap protein FliD compare
PS417_08195 +1.4 8.8 hypothetical protein compare
PS417_19835 +1.4 1.8 flagellar biosynthesis protein FliS compare
PS417_24885 +1.4 3.1 transcriptional regulator compare
PS417_06510 +1.3 7.7 ATP-dependent DNA helicase DinG conserved
PS417_19860 +1.3 10.6 flagellar hook protein FlgL compare
PS417_13205 +1.3 2.6 isochorismate-pyruvate lyase compare
PS417_15495 +1.2 1.6 FAD-dependent oxidoreductase compare
PS417_19870 +1.2 5.0 flagellar rod assembly protein FlgJ compare
PS417_26120 +1.2 1.4 hypothetical protein compare
PS417_20650 +1.2 7.9 hypothetical protein compare
PS417_01415 +1.2 7.9 glycosyl transferase family 1 compare
PS417_20105 +1.2 10.6 glycosyl transferase compare
PS417_21595 +1.2 6.2 flagellar biosynthesis protein FlgN compare
PS417_20655 +1.1 7.3 group 1 glycosyl transferase compare
PS417_01400 +1.1 4.1 hypothetical protein compare
PS417_01410 +1.1 7.6 transporter compare
PS417_01395 +1.1 9.2 biofilm formation protein PelB compare
PS417_08155 +1.1 1.3 integration host factor subunit beta compare
PS417_21560 +1.0 3.3 flagellar basal body rod modification protein FlgD compare
PS417_19830 +1.0 1.9 flagellar assembly protein FliT compare
PS417_20095 +1.0 8.2 hypothetical protein compare
PS417_21630 +1.0 2.1 magnesium transporter compare
PS417_19755 +1.0 2.1 flagellar motor switch protein FliM compare
PS417_01405 +1.0 3.6 sugar transporter compare
PS417_08180 +1.0 6.5 glycosyl transferase compare
PS417_08165 +1.0 7.5 UDP-glucose 4-epimerase compare
PS417_25120 +1.0 4.0 capsular biosynthesis protein compare
PS417_19705 +1.0 3.6 flagellar biosynthesis regulator FlhF compare
PS417_20670 +0.9 4.6 glycosyl transferase family 2 compare
PS417_05635 +0.9 5.6 membrane protein compare
PS417_03260 +0.9 3.1 5S ribosomal RNA compare
PS417_26645 +0.9 2.0 chemotaxis protein compare
PS417_11375 +0.9 1.6 hypothetical protein compare
PS417_02950 +0.9 2.3 tRNA-dihydrouridine synthase B compare
PS417_15400 +0.9 1.1 hypothetical protein compare
PS417_18000 +0.9 2.6 hypothetical protein compare
PS417_26760 +0.9 6.6 oxidase compare
PS417_00915 +0.9 2.7 aminotransferase compare
PS417_20660 +0.9 5.3 hypothetical protein compare
PS417_06945 +0.9 1.6 membrane protein compare
PS417_02435 +0.9 4.4 flagellar motor protein MotA compare
PS417_24500 +0.9 3.1 DEAD/DEAH box helicase compare
PS417_11510 +0.9 1.7 AraC family transcriptional regulator compare
PS417_12855 +0.9 4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20090 +0.9 5.4 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_20930 +0.8 5.8 50S rRNA methyltransferase compare
PS417_13755 +0.8 2.3 oxidoreductase compare
PS417_09930 +0.8 1.9 hypothetical protein compare
PS417_19805 +0.8 1.3 flagellar M-ring protein FliF compare
PS417_12220 +0.8 2.3 hydroxyacylglutathione hydrolase compare
PS417_01420 +0.8 5.6 histidine kinase compare
PS417_25650 +0.8 3.4 anhydro-N-acetylmuramic acid kinase compare
PS417_09505 +0.8 2.9 hypothetical protein compare
PS417_24085 +0.8 2.4 protein RnfH compare
PS417_17840 +0.8 1.2 betaine-aldehyde dehydrogenase compare
PS417_10985 +0.8 1.3 NADH:flavin oxidoreductase compare
PS417_20100 +0.8 4.4 hypothetical protein compare
PS417_18205 +0.8 1.7 aldehyde dehydrogenase compare
PS417_16045 +0.8 1.8 acyl-CoA dehydrogenase compare
PS417_24765 +0.8 3.6 membrane protein compare
PS417_27445 +0.7 4.4 membrane protein compare
PS417_26730 +0.7 0.6 pyrroline-5-carboxylate reductase compare
PS417_18495 +0.7 2.2 hypothetical protein compare
PS417_18060 +0.7 2.2 general secretion pathway protein GspJ compare
PS417_08220 +0.7 1.1 epimerase compare
PS417_07540 +0.7 2.0 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_01390 +0.7 5.2 PbsX family transcriptional regulator compare
PS417_21125 +0.7 3.7 phosphoadenosine phosphosulfate reductase compare
PS417_14165 +0.7 2.4 ArsR family transcriptional regulator compare
PS417_26655 +0.7 5.3 chemotaxis protein compare
PS417_13510 +0.7 0.9 polyketide cyclase compare
PS417_22830 +0.7 4.9 DNA polymerase IV compare
PS417_26370 +0.7 3.6 RNA helicase compare
PS417_26650 +0.7 4.9 histidine kinase compare
PS417_16845 +0.7 1.5 monovalent cation/H+ antiporter subunit E compare
PS417_18370 +0.7 2.2 hypothetical protein compare
PS417_15820 +0.7 1.0 universal stress protein UspA compare
PS417_04225 +0.7 1.9 conjugal transfer protein TraR compare
PS417_19955 +0.7 2.0 hypothetical protein compare
PS417_27315 +0.7 1.2 hypothetical protein compare
PS417_16945 +0.7 1.7 LuxR family transcriptional regulator compare
PS417_19425 +0.7 0.7 allantoicase compare
PS417_11720 +0.7 2.1 class V aminotransferase compare
PS417_14075 +0.7 1.3 hypothetical protein compare
PS417_20310 +0.6 2.2 hypothetical protein compare
PS417_02880 +0.6 0.9 copper chaperone compare
PS417_13090 +0.6 1.5 dienelactone hydrolase compare
PS417_26220 +0.6 2.2 Rieske (2Fe-2S) protein compare
PS417_05535 +0.6 1.2 Fis family transcriptional regulator compare
PS417_11440 +0.6 1.2 hypothetical protein compare
PS417_15425 +0.6 1.3 acetyltransferase compare
PS417_21730 +0.6 3.2 peptidase M14 compare
PS417_03000 +0.6 3.3 translation initiation factor Sui1 compare
PS417_17980 +0.6 1.4 ABC transporter permease compare
PS417_01285 +0.6 2.0 haloacid dehalogenase compare
PS417_12375 +0.6 1.3 serine/threonine protein phosphatase compare
PS417_28280 +0.6 2.5 hypothetical protein compare
PS417_10120 +0.6 2.4 hypothetical protein compare
PS417_09915 +0.6 1.2 hypothetical protein compare
PS417_08320 +0.6 1.6 metal-chelation protein CHAD compare
PS417_25105 +0.6 2.8 hypothetical protein compare
PS417_27990 +0.6 1.4 hypothetical protein compare
PS417_17320 +0.6 1.7 phenylhydantoinase compare
PS417_24115 +0.6 1.8 hypothetical protein compare
PS417_03120 +0.6 2.1 histidine kinase compare
PS417_04290 +0.6 2.5 hypothetical protein compare
PS417_21255 +0.6 2.1 hypothetical protein compare
PS417_24495 +0.6 2.0 NAD(FAD)-utilizing dehydrogenase compare
PS417_18490 +0.6 1.4 hypothetical protein compare
PS417_26815 +0.6 1.4 peptidase M16 compare
PS417_17065 +0.6 1.3 catalase compare
PS417_15255 +0.6 1.8 serine/threonine protein kinase compare
PS417_05790 +0.6 2.5 hypothetical protein compare
PS417_19065 +0.6 0.8 monooxygenase compare
PS417_23380 +0.6 1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_23805 +0.6 3.0 acetolactate synthase 3 regulatory subunit compare
PS417_08590 +0.6 1.7 hypothetical protein compare
PS417_02630 +0.6 2.1 NAD synthetase compare
PS417_12705 +0.6 1.4 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) compare
PS417_20685 +0.6 1.7 CAAX protease compare
PS417_02440 +0.6 1.6 flagellar motor protein MotB compare
PS417_09205 +0.6 3.6 membrane protein compare
PS417_01030 +0.6 1.2 glutamine ABC transporter substrate-binding protein compare
PS417_15750 +0.6 1.3 protease compare
PS417_18570 +0.6 2.3 peptidoglycan-binding protein compare
PS417_06190 +0.6 1.9 sodium:proton antiporter compare
PS417_01795 +0.6 4.1 glucosyltransferase MdoH compare
PS417_20115 +0.6 1.5 hypothetical protein compare
PS417_18400 +0.6 1.6 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_25390 +0.6 3.1 MFS transporter compare
PS417_08150 +0.6 1.9 hypothetical protein compare
PS417_27155 +0.6 0.8 aliphatic sulfonates transport ATP-binding subunit compare
PS417_25100 +0.6 4.2 hypothetical protein compare
PS417_19850 +0.6 3.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_08160 +0.6 1.3 hypothetical protein compare
PS417_20025 +0.6 1.2 alpha-ribazole phosphatase compare
PS417_25645 +0.5 3.0 peptidase M23 compare
PS417_02575 +0.5 1.3 membrane protein compare
PS417_03815 +0.5 1.6 DNA transporter compare
PS417_24840 +0.5 0.9 hypothetical protein compare
PS417_06600 +0.5 0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_26660 +0.5 2.8 protein PilI compare
PS417_18020 +0.5 1.3 hypothetical protein compare
PS417_09650 +0.5 2.2 siderophore-interacting protein compare
PS417_20610 +0.5 1.0 hypothetical protein compare
PS417_10740 +0.5 1.6 hypothetical protein compare
PS417_01210 +0.5 3.1 hypothetical protein compare
PS417_22025 +0.5 1.8 LysR family transcriptional regulator compare
PS417_11570 +0.5 1.6 ABC transporter permease compare
PS417_26230 +0.5 1.6 electron transfer flavoprotein subunit alpha compare
PS417_00810 +0.5 2.0 RNA polymerase sigma factor compare
PS417_12135 +0.5 1.9 peptidylprolyl isomerase compare
PS417_16515 +0.5 1.4 Clp protease ClpS compare
PS417_13645 +0.5 1.8 ABC transporter compare
PS417_23105 +0.5 0.9 hypothetical protein compare
PS417_17650 +0.5 1.5 proteinase compare
PS417_16640 +0.5 1.4 toxin compare
PS417_09680 +0.5 1.0 hydrolase compare
PS417_07110 +0.5 1.5 hypothetical protein compare
PS417_27045 +0.5 1.9 ATPase compare
PS417_15295 +0.5 2.4 Fis family transcriptional regulator compare
PS417_01790 +0.5 2.7 glucan biosynthesis protein G compare
PS417_11070 +0.5 1.3 rhizopine-binding protein compare
PS417_07815 +0.5 2.0 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas simiae WCS417

For stress Nalidixic acid sodium salt across organisms