Experiment set3IT037 for Pseudomonas simiae WCS417

Compare to:

LB with Spectinomycin dihydrochloride pentahydrate 0.4 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_02280 -4.9 -2.7 GlcNAc-PI de-N-acetylase compare
PS417_12595 -4.7 -2.6 transcriptional regulator compare
PS417_23770 -4.2 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_22570 -4.2 -1.6 H-NS histone compare
PS417_23775 -4.0 -3.3 exodeoxyribonuclease V subunit beta compare
PS417_12585 -3.7 -8.1 acriflavine resistance protein B conserved
PS417_22520 -3.5 -3.3 histidine kinase compare
PS417_28070 -3.0 -6.3 phosphate ABC transporter ATP-binding protein compare
PS417_14065 -2.6 -8.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_17215 -2.4 -5.6 peptidylprolyl isomerase compare
PS417_13820 -2.3 -7.4 UDP-glucose 6-dehydrogenase compare
PS417_06375 -2.3 -1.5 deoxycytidine triphosphate deaminase compare
PS417_21515 -2.2 -10.5 transcriptional regulator compare
PS417_04650 -2.2 -1.6 D-alanine--D-alanine ligase compare
PS417_27245 -2.2 -2.8 aminotransferase DegT compare
PS417_13800 -2.2 -4.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02575 -2.2 -6.3 membrane protein compare
PS417_21510 -2.2 -2.4 histidine kinase compare
PS417_27800 -2.1 -7.5 exodeoxyribonuclease III compare
PS417_01920 -2.1 -2.4 ATP-dependent protease subunit HslV compare
PS417_13795 -2.0 -6.3 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_22620 -1.9 -5.6 pyruvate kinase compare
PS417_06770 -1.9 -5.6 multidrug transporter compare
PS417_24835 -1.9 -6.7 hypothetical protein compare
PS417_06775 -1.9 -5.6 antibiotic transporter compare
PS417_13790 -1.9 -5.8 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_27865 -1.9 -5.3 LysR family transcriptional regulator compare
PS417_22450 -1.8 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_28080 -1.8 -10.1 phosphate ABC transporter permease compare
PS417_13805 -1.8 -9.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_22205 -1.7 -9.8 potassium transporter TrkH compare
PS417_22690 -1.7 -3.2 phosphogluconate dehydratase compare
PS417_02270 -1.7 -5.8 carbamoyltransferase compare
PS417_04365 -1.7 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02555 -1.6 -11.8 exoribonuclease R compare
PS417_00080 -1.6 -9.2 potassium transporter peripheral membrane component compare
PS417_27640 -1.6 -2.0 TetR family transcriptional regulator compare
PS417_01915 -1.6 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02720 -1.5 -1.5 TetR family transcriptional regulator compare
PS417_27610 -1.5 -4.3 hypothetical protein compare
PS417_15495 -1.5 -1.3 FAD-dependent oxidoreductase compare
PS417_04590 -1.5 -6.5 methyltransferase compare
PS417_27940 -1.5 -1.6 type VI secretion protein compare
PS417_27870 -1.5 -4.2 ATP-dependent DNA helicase RecG compare
PS417_02475 -1.5 -4.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_27605 -1.4 -5.0 hypothetical protein compare
PS417_28085 -1.4 -7.7 phosphate-binding protein compare
PS417_23025 -1.4 -6.3 murein transglycosylase compare
PS417_06680 -1.4 -7.6 nuclease PIN compare
PS417_26660 -1.4 -4.4 protein PilI compare
PS417_26645 -1.3 -1.9 chemotaxis protein compare
PS417_26650 -1.3 -7.8 histidine kinase compare
PS417_22565 -1.3 -1.4 formyltetrahydrofolate deformylase compare
PS417_19785 -1.3 -1.7 flagellar biogenesis protein compare
PS417_14960 -1.3 -7.6 ATPase compare
PS417_15095 -1.3 -1.9 hypothetical protein compare
PS417_05865 -1.3 -1.7 hypothetical protein compare
PS417_07565 -1.2 -2.9 hypothetical protein compare
PS417_28450 -1.2 -2.1 XRE family transcriptional regulator compare
PS417_22795 -1.2 -1.9 exclusion suppressor FxsA compare
PS417_23135 -1.2 -2.3 GTP-binding protein compare
PS417_27595 -1.2 -3.0 recombinase XerC compare
PS417_05505 -1.2 -6.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_02485 -1.2 -2.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05525 -1.2 -4.8 Fis family transcriptional regulator compare
PS417_05695 -1.1 -3.5 transcriptional regulator compare
PS417_28075 -1.1 -3.0 phosphate ABC transporter permease compare
PS417_26655 -1.1 -3.0 chemotaxis protein compare
PS417_12855 -1.1 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02495 -1.1 -2.5 GTPase HflX compare
PS417_15100 -1.1 -2.5 BatB protein compare
PS417_11825 -1.1 -2.0 transcriptional regulator compare
PS417_23950 -1.1 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_04380 -1.1 -2.2 ABC transporter permease compare
PS417_07140 -1.1 -2.8 peptidase M48 compare
PS417_21595 -1.0 -2.7 flagellar biosynthesis protein FlgN compare
PS417_27290 -1.0 -1.5 hypothetical protein compare
PS417_23360 -1.0 -1.0 hypothetical protein compare
PS417_26175 -1.0 -0.8 sarcosine oxidase subunit gamma compare
PS417_21125 -1.0 -4.2 phosphoadenosine phosphosulfate reductase compare
PS417_02630 -1.0 -1.8 NAD synthetase compare
PS417_05140 -1.0 -1.7 dipicolinate synthase compare
PS417_02510 -1.0 -1.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22945 -1.0 -2.2 phosphoribosylglycinamide formyltransferase compare
PS417_06205 -1.0 -5.1 methionine aminopeptidase compare
PS417_24675 -1.0 -1.9 lipoyl synthase compare
PS417_19860 -0.9 -6.7 flagellar hook protein FlgL compare
PS417_22445 -0.9 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_10220 -0.9 -2.4 hypothetical protein compare
PS417_23150 -0.9 -2.0 Cro/Cl family transcriptional regulator compare
PS417_08540 -0.9 -2.4 RNA helicase compare
PS417_06945 -0.9 -1.0 membrane protein compare
PS417_20130 -0.9 -5.6 dehydrogenase compare
PS417_12380 -0.9 -4.4 peptidase S54 compare
PS417_25650 -0.9 -2.5 anhydro-N-acetylmuramic acid kinase compare
PS417_05010 -0.9 -2.2 IclR family transcriptional regulator compare
PS417_05520 -0.9 -4.6 histidine kinase compare
PS417_19600 -0.9 -1.1 exonuclease compare
PS417_02365 -0.9 -1.9 hypothetical protein compare
PS417_24935 -0.9 -1.0 hypothetical protein compare
PS417_08170 -0.9 -5.3 capsular biosynthesis protein compare
PS417_06370 -0.9 -1.1 cold-shock protein compare
PS417_27510 -0.8 -3.8 disulfide bond formation protein B compare
PS417_27875 -0.8 -4.2 histidine kinase compare
PS417_27810 -0.8 -5.8 ribonuclease PH compare
PS417_19840 -0.8 -4.9 flagellar cap protein FliD compare
PS417_16400 -0.8 -1.8 NAD(P)H-quinone oxidoreductase compare
PS417_28225 -0.8 -1.2 hypothetical protein compare
PS417_21780 -0.8 -1.4 argininosuccinate lyase compare
PS417_01095 -0.8 -1.6 amino acid ABC transporter ATP-binding protein compare
PS417_24705 -0.8 -3.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_15085 -0.8 -3.5 ATPase AAA compare
PS417_24115 -0.8 -1.2 hypothetical protein compare
PS417_21555 -0.8 -5.4 flagellar hook protein FlgE compare
PS417_20855 -0.8 -1.2 hypothetical protein compare
PS417_19695 -0.8 -3.6 flagellar biosynthesis sigma factor compare
PS417_09695 -0.8 -1.2 hydrolase compare
PS417_00180 -0.8 -1.4 tryptophan synthase subunit alpha compare
PS417_05815 -0.8 -2.4 recombinase RecA compare
PS417_19720 -0.8 -1.3 DNA-binding protein compare
PS417_06685 -0.8 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_02435 -0.8 -3.8 flagellar motor protein MotA compare
PS417_12740 -0.8 -2.6 secretion protein HlyD compare
PS417_21655 -0.8 -1.0 aspartate kinase compare
PS417_23160 -0.8 -2.9 50S rRNA methyltransferase compare
PS417_04595 -0.8 -2.1 cell division protein MraZ compare
PS417_00925 -0.8 -1.1 hypothetical protein compare
PS417_15895 -0.8 -2.5 iron dicitrate transport regulator FecR compare
PS417_03740 -0.7 -2.9 peptidylprolyl isomerase compare
PS417_16815 -0.7 -2.1 acyl-CoA dehydrogenase compare
PS417_19850 -0.7 -3.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_15650 -0.7 -1.6 glutamine amidotransferase compare
PS417_14400 -0.7 -1.8 hypothetical protein compare
PS417_27205 -0.7 -1.9 adenylate cyclase compare
PS417_16310 -0.7 -3.4 membrane protein compare
PS417_02440 -0.7 -2.0 flagellar motor protein MotB compare
PS417_00175 -0.7 -0.9 CigR compare
PS417_18635 -0.7 -2.0 4-hydroxybenzoyl-CoA thioesterase compare
PS417_11830 -0.7 -1.9 membrane protein compare
PS417_09325 -0.7 -3.4 peptidase S41 compare
PS417_01995 -0.7 -1.6 hypothetical protein compare
PS417_22580 -0.7 -1.4 membrane protein compare
PS417_17035 -0.7 -1.0 Cro/Cl family transcriptional regulator compare
PS417_01950 -0.7 -2.6 malate dehydrogenase compare
PS417_26605 -0.7 -1.0 malonate decarboxylase subunit beta compare
PS417_05510 -0.7 -2.7 alpha/beta hydrolase compare
PS417_27425 -0.7 -4.3 exopolyphosphatase compare
PS417_24780 -0.7 -4.7 peptidase C13 compare
PS417_16490 -0.7 -1.4 cell division protein FtsK compare
PS417_22175 -0.7 -1.3 amino acid transporter LysE compare
PS417_06735 -0.7 -1.1 3-oxoadipate enol-lactonase compare
PS417_05515 -0.7 -3.9 hypothetical protein compare
PS417_00345 -0.7 -2.0 copper-binding protein compare
PS417_17405 -0.7 -1.1 AraC family transcriptional regulator compare
PS417_18425 -0.7 -0.8 sporulation protein compare
PS417_27585 -0.7 -0.7 diaminopimelate epimerase compare
PS417_05610 -0.7 -2.6 bacterioferritin compare
PS417_11965 -0.7 -1.2 GCN5 family acetyltransferase compare
PS417_01600 -0.7 -2.3 peptidase M23 compare
PS417_26755 -0.7 -0.9 nucleoside-triphosphate diphosphatase compare
PS417_14515 -0.7 -1.2 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_21630 -0.7 -1.2 magnesium transporter compare
PS417_13780 -0.7 -3.1 integrase compare
PS417_23205 -0.7 -1.9 transcriptional regulator compare
PS417_21560 -0.7 -3.3 flagellar basal body rod modification protein FlgD compare
PS417_02385 -0.7 -0.9 esterase compare
PS417_06675 -0.7 -2.0 ATP-dependent helicase compare
PS417_09235 -0.7 -0.7 molecular chaperone compare
PS417_01635 -0.7 -2.5 nitrogen regulation protein NR(I) compare
PS417_24710 -0.7 -3.3 lipoprotein compare
PS417_18025 -0.7 -2.1 cytochrome C compare
PS417_00370 -0.6 -0.8 hypothetical protein compare
PS417_23015 -0.6 -1.5 NGG1p interacting factor 3 protein, NIF3 compare
PS417_24155 -0.6 -1.0 ATP-binding protein compare
PS417_01585 -0.6 -2.4 amino acid ABC transporter substrate-binding protein compare
PS417_11930 -0.6 -3.6 hypothetical protein compare
PS417_19865 -0.6 -3.9 flagellar hook protein FlgK compare
PS417_26805 -0.6 -0.7 cell division protein FtsE compare
PS417_07875 -0.6 -0.6 hypothetical protein compare
PS417_02800 -0.6 -1.2 acetyltransferase compare
PS417_20575 -0.6 -3.5 ATP-dependent helicase HrpA compare
PS417_19975 -0.6 -1.3 hypothetical protein compare
PS417_21575 -0.6 -2.1 chemotaxis protein compare
PS417_12750 -0.6 -2.9 acriflavine resistance protein B compare
PS417_19795 -0.6 -3.4 flagellar assembly protein FliH compare
PS417_07620 -0.6 -1.2 beta-hexosaminidase compare
PS417_18885 -0.6 -1.4 GntR family transcriptional regulator compare
PS417_08580 -0.6 -2.8 histidine kinase compare
PS417_22695 -0.6 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_28325 -0.6 -1.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_13730 -0.6 -1.4 hypothetical protein compare
PS417_01955 -0.6 -3.4 peptidase compare
PS417_19510 -0.6 -1.9 N-acetylmuramoyl-L-alanine amidase compare
PS417_04170 -0.6 -1.9 stringent starvation protein A compare
PS417_06530 -0.6 -1.2 membrane protein compare
PS417_27520 -0.6 -2.7 uroporphyrin-III methyltransferase compare
PS417_23155 -0.6 -3.1 pilus assembly protein PilW compare
PS417_06645 -0.6 -3.7 RNA polymerase-associated protein RapA compare
PS417_14605 -0.6 -1.8 adenylate kinase compare
PS417_04585 -0.6 -1.0 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Pseudomonas simiae WCS417

For stress Spectinomycin dihydrochloride pentahydrate across organisms