Experiment set3IT036 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Fusidic acid sodium salt 0.0005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_03190 +9.0 49.9 hypothetical protein compare
CA264_03635 +6.3 36.1 DoxX family protein compare
CA264_03640 +6.2 38.3 TetR family transcriptional regulator compare
CA264_07185 +4.0 8.8 TetR family transcriptional regulator compare
CA264_16115 +2.9 12.6 hypothetical protein compare
CA264_03630 +2.8 15.3 PAS domain-containing sensor histidine kinase compare
CA264_03625 +2.5 13.5 proline iminopeptidase compare
CA264_06345 +2.0 17.4 hypothetical protein compare
CA264_07045 +1.9 12.8 TetR family transcriptional regulator compare
CA264_16130 +1.9 4.6 TetR family transcriptional regulator compare
CA264_13015 +1.9 13.4 sensor histidine kinase compare
CA264_07050 +1.7 9.8 serine acetyltransferase compare
CA264_19925 +1.5 5.7 peptidyl-prolyl cis-trans isomerase compare
CA264_07055 +1.3 9.0 hypothetical protein compare
CA264_16125 +1.3 8.7 DNA-binding response regulator compare
CA264_04495 +1.3 8.1 histidine kinase compare
CA264_07190 +1.3 3.3 hypothetical protein compare
CA264_17875 +1.2 3.1 amino acid dehydrogenase compare
CA264_16385 +1.2 7.7 DUF4271 domain-containing protein compare
CA264_10805 +1.2 5.3 NADPH-dependent oxidoreductase compare
CA264_20060 +1.2 2.0 ribosome silencing factor RsfS compare
CA264_15850 +1.2 6.7 IclR family transcriptional regulator compare
CA264_20120 +1.2 3.6 hypothetical protein compare
CA264_04605 +1.1 8.4 hypothetical protein compare
CA264_15160 +1.1 5.8 nucleoside triphosphate pyrophosphohydrolase compare
CA264_11295 +1.1 7.1 hypothetical protein compare
CA264_17030 +1.1 9.0 hypothetical protein compare
CA264_18770 +1.1 6.1 hypothetical protein compare
CA264_09635 +1.0 5.8 hypothetical protein compare
CA264_03870 +1.0 4.4 transcription elongation factor GreA compare
CA264_15845 +1.0 2.1 hypothetical protein compare
CA264_13340 +1.0 1.9 iron-sulfur cluster assembly accessory protein compare
CA264_03195 +0.9 6.6 alpha-glucan family phosphorylase compare
CA264_04600 +0.9 8.4 hypothetical protein compare
CA264_07660 +0.9 5.3 hypothetical protein compare
CA264_13100 +0.9 2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
CA264_10520 +0.9 2.3 molybdopterin synthase sulfur carrier subunit compare
CA264_15150 +0.9 2.7 hypothetical protein compare
CA264_11995 +0.8 2.6 hypothetical protein compare
CA264_09375 +0.8 1.9 transcriptional regulator compare
CA264_10005 +0.8 2.4 hypothetical protein compare
CA264_00835 +0.8 3.3 hypothetical protein compare
CA264_19150 +0.8 5.9 TonB dependent receptor compare
CA264_06475 +0.8 1.0 hypothetical protein compare
CA264_02720 +0.8 5.7 peroxiredoxin compare
CA264_01390 +0.8 4.8 iron ABC transporter permease compare
CA264_04570 +0.8 6.1 undecaprenyl-phosphate glucose phosphotransferase compare
CA264_12400 +0.8 5.4 hypothetical protein compare
CA264_14455 +0.8 3.5 ribosome maturation factor compare
CA264_19005 +0.7 5.9 SusC/RagA family TonB-linked outer membrane protein compare
CA264_17860 +0.7 3.7 tRNA dihydrouridine synthase DusB compare
CA264_16565 +0.7 2.2 hypothetical protein compare
CA264_08090 +0.7 4.7 short-chain dehydrogenase compare
CA264_01385 +0.7 5.0 iron ABC transporter substrate-binding protein compare
CA264_09800 +0.7 4.1 DNA-binding response regulator compare
CA264_07665 +0.7 4.5 sulfurtransferase compare
CA264_19010 +0.7 6.2 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_05850 +0.7 3.5 hypothetical protein compare
CA264_04900 +0.7 3.1 bacillithiol biosynthesis deacetylase BshB1 compare
CA264_07060 +0.7 3.8 toxic anion resistance protein compare
CA264_17780 +0.7 2.8 hypothetical protein compare
CA264_11135 +0.7 2.5 DUF2179 domain-containing protein compare
CA264_11845 +0.7 2.5 hypothetical protein compare
CA264_05400 +0.7 3.4 MarR family transcriptional regulator compare
CA264_06160 +0.7 1.9 hypothetical protein compare
CA264_01725 +0.7 2.0 NADH-quinone oxidoreductase subunit K compare
CA264_00050 +0.7 3.7 hypothetical protein compare
CA264_20010 +0.7 3.3 gliding motility lipoprotein GldH compare
CA264_18290 +0.6 4.3 NADH dehydrogenase subunit D compare
CA264_08170 +0.6 2.1 hypothetical protein compare
CA264_11985 +0.6 2.7 dipeptidase E compare
CA264_00565 +0.6 1.2 hypothetical protein compare
CA264_04905 +0.6 2.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
CA264_17095 +0.6 1.0 FeoB-associated Cys-rich membrane protein compare
CA264_15595 +0.6 4.9 hypothetical protein compare
CA264_19450 +0.6 3.2 type I methionyl aminopeptidase compare
CA264_13865 +0.6 1.7 hypothetical protein compare
CA264_17640 +0.6 3.3 acyl-CoA dehydrogenase compare
CA264_00730 +0.6 2.6 hypothetical protein compare
CA264_21285 +0.6 1.6 hypothetical protein compare
CA264_01815 +0.6 1.2 N-acetyltransferase compare
CA264_09625 +0.6 3.6 hypothetical protein compare
CA264_08665 +0.6 2.7 N-acetylmuramoyl-L-alanine amidase compare
CA264_12340 +0.6 3.1 acetyltransferase compare
CA264_16440 +0.6 1.4 hypothetical protein compare
CA264_14345 +0.6 2.4 hypothetical protein compare
CA264_12560 +0.6 3.2 hypothetical protein compare
CA264_06530 +0.6 2.0 peptidase compare
CA264_02290 +0.6 3.6 hypothetical protein compare
CA264_18825 +0.6 2.1 hypothetical protein compare
CA264_12405 +0.6 4.3 hypothetical protein compare
CA264_01990 +0.6 1.5 tRNA-Lys compare
CA264_21400 +0.6 4.9 hypothetical protein compare
CA264_03160 +0.6 2.1 metallophosphoesterase compare
CA264_09620 +0.6 3.3 hypothetical protein compare
CA264_00045 +0.6 4.3 endopeptidase La compare
CA264_16905 +0.6 2.6 hypothetical protein compare
CA264_09630 +0.6 3.9 hypothetical protein compare
CA264_20095 +0.6 1.9 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA264_15690 +0.6 2.9 hypothetical protein compare
CA264_08265 +0.6 2.3 iron-sulfur cluster assembly accessory protein compare
CA264_15050 +0.6 4.8 3-hydroxyacyl-CoA dehydrogenase compare
CA264_13470 +0.5 0.8 cysteine synthase A compare
CA264_16120 +0.5 1.3 sensor histidine kinase compare
CA264_20490 +0.5 1.4 hypothetical protein compare
CA264_03620 +0.5 3.6 acyl-CoA desaturase compare
CA264_10575 +0.5 1.5 hypothetical protein compare
CA264_16105 +0.5 2.4 3-hydroxybutyryl-CoA dehydrogenase compare
CA264_18495 +0.5 1.8 four helix bundle protein compare
CA264_17100 +0.5 1.2 hypothetical protein compare
CA264_13030 +0.5 1.9 cysteine methyltransferase compare
CA264_07280 +0.5 2.9 hypothetical protein compare
CA264_15820 +0.5 4.5 transcription-repair coupling factor compare
CA264_12785 +0.5 1.1 Rieske (2Fe-2S) protein compare
CA264_00240 +0.5 2.0 hypothetical protein compare
CA264_00675 +0.5 2.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA264_05650 +0.5 3.3 tryptophan 2,3-dioxygenase compare
CA264_16330 +0.5 2.7 hypothetical protein compare
CA264_08290 +0.5 2.7 Fe-S metabolism protein SufE compare
CA264_08615 +0.5 2.0 hypothetical protein compare
CA264_20115 +0.5 3.3 phosphoribosylamine--glycine ligase compare
CA264_21300 +0.5 0.8 hypothetical protein compare
CA264_06845 +0.5 1.2 hypothetical protein compare
CA264_18250 +0.5 1.3 NADH-quinone oxidoreductase subunit B compare
CA264_17350 +0.5 3.6 hypothetical protein compare
CA264_05230 +0.5 3.2 hypothetical protein compare
CA264_02565 +0.5 1.4 hypothetical protein compare
CA264_15875 +0.5 4.2 bacillithiol biosynthesis cysteine-adding enzyme BshC compare
CA264_21420 +0.5 1.4 hypothetical protein compare
CA264_04350 +0.5 2.5 alanine dehydrogenase compare
CA264_10750 +0.5 2.5 SAM-dependent methyltransferase compare
CA264_10585 +0.5 1.9 hypothetical protein compare
CA264_02185 +0.5 2.8 GNAT family N-acetyltransferase compare
CA264_07245 +0.5 3.3 hypothetical protein compare
CA264_17685 +0.5 3.1 hypothetical protein compare
CA264_13150 +0.5 2.2 hypothetical protein compare
CA264_19950 +0.5 2.3 hypothetical protein compare
CA264_20070 +0.5 2.6 hypothetical protein compare
CA264_19875 +0.5 0.7 RNA methyltransferase compare
CA264_04520 +0.5 3.1 DNA mismatch repair protein MutS compare
CA264_11605 +0.5 1.2 hypothetical protein compare
CA264_13315 +0.5 2.9 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA compare
CA264_11300 +0.5 3.1 mechanosensitive ion channel protein MscS compare
CA264_16935 +0.5 1.1 hypothetical protein compare
CA264_15035 +0.5 3.3 acyl-CoA dehydrogenase compare
CA264_06590 +0.5 2.8 3-hydroxybutyryl-CoA dehydrogenase compare
CA264_20690 +0.5 3.4 methylmalonyl-CoA mutase compare
CA264_04345 +0.5 3.5 CAAX protease family protein compare
CA264_12940 +0.5 2.2 alcohol dehydrogenase compare
CA264_19865 +0.5 2.1 hypothetical protein compare
CA264_03885 +0.5 2.0 hypothetical protein compare
CA264_20455 +0.5 3.0 LLM class flavin-dependent oxidoreductase compare
CA264_13085 +0.5 3.1 methylmalonyl-CoA carboxyltransferase compare
CA264_18790 +0.5 2.7 thymidine kinase compare
CA264_20470 +0.5 3.4 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase compare
CA264_07565 +0.4 1.8 four-helix bundle copper-binding protein compare
CA264_16820 +0.4 2.5 hypothetical protein compare
CA264_01565 +0.4 2.6 tellurium resistance protein TerC compare
CA264_19245 +0.4 2.5 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
CA264_17445 +0.4 1.2 peptidase M28 compare
CA264_01790 +0.4 1.3 hypothetical protein compare
CA264_04595 +0.4 3.6 hypothetical protein compare
CA264_00345 +0.4 2.4 peptidyl-prolyl cis-trans isomerase compare
CA264_04490 +0.4 2.3 DNA-binding response regulator compare
CA264_15430 +0.4 0.9 carbamoyl phosphate synthase large subunit compare
CA264_18165 +0.4 2.5 S1/P1 Nuclease compare
CA264_18355 +0.4 1.8 thioredoxin family protein compare
CA264_13480 +0.4 1.2 hypothetical protein compare
CA264_19195 +0.4 3.2 hypothetical protein compare
CA264_20875 +0.4 2.3 resolvase compare
CA264_01740 +0.4 1.3 proton-translocating NADH-quinone oxidoreductase subunit N compare
CA264_01425 +0.4 3.4 RelA/SpoT family protein compare
CA264_20545 +0.4 3.3 epimerase compare
CA264_07260 +0.4 2.8 hypothetical protein compare
CA264_04480 +0.4 2.9 hypothetical protein compare
CA264_14195 +0.4 3.0 1-pyrroline-5-carboxylate dehydrogenase compare
CA264_07270 +0.4 2.5 hypothetical protein compare
CA264_19630 +0.4 1.1 hypothetical protein compare
CA264_15505 +0.4 2.5 phosphatase PAP2 family protein compare
CA264_05975 +0.4 2.6 hypothetical protein compare
CA264_01645 +0.4 1.7 hypothetical protein compare
CA264_05010 +0.4 2.9 hypothetical protein compare
CA264_05875 +0.4 2.6 hypothetical protein compare
CA264_14160 +0.4 1.0 HupE / UreJ protein compare
CA264_13495 +0.4 2.8 aldehyde dehydrogenase compare
CA264_02630 +0.4 1.5 carbonic anhydrase compare
CA264_10305 +0.4 0.6 hypothetical protein compare
CA264_18525 +0.4 1.8 hypothetical protein compare
CA264_15325 +0.4 3.4 hypothetical protein compare
CA264_15510 +0.4 2.2 DUF4864 domain-containing protein compare
CA264_12350 +0.4 2.9 glycosyltransferase family 1 protein compare
CA264_06565 +0.4 1.0 hypothetical protein compare
CA264_16865 +0.4 2.2 hypothetical protein compare
CA264_01810 +0.4 1.9 hypothetical protein compare
CA264_21545 +0.4 1.2 AraC family transcriptional regulator compare
CA264_07200 +0.4 2.8 glutamate dehydrogenase compare
CA264_05785 +0.4 0.7 cbb3-type cytochrome oxidase assembly protein CcoS compare
CA264_18360 +0.4 1.6 osmotically inducible protein OsmC compare
CA264_04740 +0.4 0.8 arsenate reductase (glutaredoxin) compare
CA264_14925 +0.4 0.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Fusidic acid sodium salt in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Fusidic acid sodium salt across organisms