Experiment set3IT035 for Pseudomonas simiae WCS417

Compare to:

LB with Tetracycline hydrochloride 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_06775 -5.1 -8.5 antibiotic transporter compare
PS417_06770 -5.1 -10.2 multidrug transporter compare
PS417_04380 -4.9 -3.7 ABC transporter permease compare
PS417_28070 -4.6 -10.1 phosphate ABC transporter ATP-binding protein compare
PS417_04385 -4.4 -7.3 organic solvent ABC transporter substrate-binding protein compare
PS417_12595 -4.4 -3.4 transcriptional regulator compare
PS417_07710 -4.3 -11.7 membrane protein compare
PS417_04375 -3.8 -5.0 ABC transporter ATP-binding protein compare
PS417_04390 -3.6 -6.5 toluene tolerance protein compare
PS417_02555 -3.4 -15.8 exoribonuclease R compare
PS417_22840 -3.3 -3.6 tRNA-Met compare
PS417_23770 -3.3 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_05500 -3.0 -5.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_05510 -2.7 -9.3 alpha/beta hydrolase compare
PS417_28080 -2.6 -11.7 phosphate ABC transporter permease compare
PS417_28085 -2.6 -8.9 phosphate-binding protein compare
PS417_20985 -2.5 -5.0 porin compare
PS417_05505 -2.5 -9.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_02255 -2.4 -4.8 lipopolysaccharide kinase compare
PS417_22825 -2.4 -6.3 hypothetical protein compare
PS417_05520 -2.3 -8.3 histidine kinase compare
PS417_05525 -2.3 -5.4 Fis family transcriptional regulator conserved
PS417_24780 -2.3 -11.5 peptidase C13 compare
PS417_07510 -2.1 -8.6 aspartyl beta-hydroxylase compare
PS417_09325 -2.1 -3.3 peptidase S41 compare
PS417_27800 -1.8 -7.0 exodeoxyribonuclease III compare
PS417_15100 -1.8 -4.2 BatB protein compare
PS417_02385 -1.7 -2.1 esterase compare
PS417_23025 -1.6 -6.8 murein transglycosylase compare
PS417_27870 -1.6 -5.2 ATP-dependent DNA helicase RecG compare
PS417_15390 -1.6 -4.4 hypothetical protein compare
PS417_06445 -1.6 -3.2 iron-siderophore ABC transporter permease compare
PS417_22570 -1.6 -1.4 H-NS histone compare
PS417_05515 -1.5 -8.1 hypothetical protein compare
PS417_05695 -1.5 -5.8 transcriptional regulator compare
PS417_20130 -1.5 -9.1 dehydrogenase compare
PS417_24155 -1.4 -2.6 ATP-binding protein compare
PS417_21000 -1.4 -3.2 CrfX protein compare
PS417_06370 -1.4 -1.6 cold-shock protein compare
PS417_23095 -1.4 -1.7 exodeoxyribonuclease compare
PS417_27795 -1.4 -1.3 orotate phosphoribosyltransferase compare
PS417_22565 -1.3 -1.6 formyltetrahydrofolate deformylase compare
PS417_13790 -1.3 -6.3 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_28075 -1.3 -3.4 phosphate ABC transporter permease compare
PS417_06395 -1.3 -2.9 amino acid transporter compare
PS417_01915 -1.3 -1.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_15095 -1.2 -3.3 hypothetical protein compare
PS417_00385 -1.2 -1.2 Fur family transcriptional regulator compare
PS417_13795 -1.2 -5.4 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_02720 -1.2 -1.5 TetR family transcriptional regulator compare
PS417_13805 -1.2 -7.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_21515 -1.1 -7.9 transcriptional regulator compare
PS417_03270 -1.1 -5.5 paraquat-inducible protein A compare
PS417_23950 -1.1 -2.3 polynucleotide phosphorylase/polyadenylase compare
PS417_15085 -1.1 -5.8 ATPase AAA compare
PS417_13820 -1.1 -3.9 UDP-glucose 6-dehydrogenase compare
PS417_01825 -1.1 -2.8 chemotaxis protein compare
PS417_08990 -1.1 -2.8 ABC transporter substrate-binding protein compare
PS417_27610 -1.1 -4.6 hypothetical protein compare
PS417_13255 -1.1 -2.4 ABC transporter compare
PS417_21090 -1.0 -1.9 hypothetical protein compare
PS417_23900 -1.0 -6.4 poly(A) polymerase compare
PS417_14515 -1.0 -2.0 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_08580 -1.0 -5.4 histidine kinase compare
PS417_01955 -1.0 -6.0 peptidase compare
PS417_22450 -1.0 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_27290 -1.0 -1.3 hypothetical protein compare
PS417_21285 -1.0 -4.4 hypothetical protein compare
PS417_20825 -1.0 -2.0 drug:proton antiporter compare
PS417_03300 -1.0 -3.1 alanine acetyltransferase compare
PS417_26900 -1.0 -1.5 L-cystine transporter tcyP compare
PS417_11810 -1.0 -1.8 oxidoreductase compare
PS417_02280 -1.0 -2.3 GlcNAc-PI de-N-acetylase compare
PS417_27245 -0.9 -2.7 aminotransferase DegT compare
PS417_08540 -0.9 -2.8 RNA helicase compare
PS417_23380 -0.9 -1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_19415 -0.9 -2.6 allantoinase compare
PS417_21100 -0.9 -4.9 alpha-L-glutamate ligase compare
PS417_07085 -0.9 -2.3 transcriptional regulator compare
PS417_04585 -0.9 -1.2 hypothetical protein compare
PS417_14960 -0.9 -5.3 ATPase compare
PS417_17160 -0.9 -2.6 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_01095 -0.9 -1.5 amino acid ABC transporter ATP-binding protein compare
PS417_07150 -0.9 -5.4 permase compare
PS417_03175 -0.9 -4.1 major facilitator transporter compare
PS417_27585 -0.9 -1.9 diaminopimelate epimerase compare
PS417_25005 -0.9 -4.4 molecular chaperone compare
PS417_06680 -0.9 -6.1 nuclease PIN compare
PS417_20170 -0.9 -2.1 hypothetical protein compare
PS417_22520 -0.9 -2.7 histidine kinase compare
PS417_16475 -0.8 -2.3 camphor resistance protein CrcB compare
PS417_03275 -0.8 -6.1 mammalian cell entry protein compare
PS417_04495 -0.8 -3.1 LITAF-like zinc ribbon domain containing protein compare
PS417_15285 -0.8 -1.1 type VI secretion protein compare
PS417_27180 -0.8 -2.4 peroxidase compare
PS417_15105 -0.8 -4.5 membrane protein compare
PS417_22575 -0.8 -4.7 exonuclease I compare
PS417_21280 -0.8 -3.4 membrane protein compare
PS417_23390 -0.8 -4.1 ubiquinol oxidase subunit II compare
PS417_05105 -0.8 -1.9 membrane protein compare
PS417_08090 -0.8 -1.3 3-oxoacyl-ACP reductase compare
PS417_04590 -0.8 -3.6 methyltransferase compare
PS417_21095 -0.8 -4.2 membrane protein compare
PS417_16020 -0.8 -1.8 LysR family transcriptional regulator compare
PS417_23775 -0.8 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_27815 -0.8 -1.0 hypothetical protein compare
PS417_16715 -0.8 -1.1 DoxX family protein compare
PS417_24800 -0.8 -2.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_04875 -0.7 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_26530 -0.7 -1.2 hypothetical protein compare
PS417_01115 -0.7 -1.2 serine acetyltransferase compare
PS417_17780 -0.7 -1.3 Ais protein compare
PS417_21655 -0.7 -1.1 aspartate kinase compare
PS417_07140 -0.7 -1.8 peptidase M48 compare
PS417_04270 -0.7 -3.7 ribonuclease G compare
PS417_03495 -0.7 -2.1 type III secretory protein EscS compare
PS417_26685 -0.7 -1.0 hypothetical protein compare
PS417_22580 -0.7 -2.3 membrane protein compare
PS417_14940 -0.7 -1.8 LysR family transcriptional regulator compare
PS417_14020 -0.7 -3.5 diguanylate phosphodiesterase compare
PS417_15895 -0.7 -1.5 iron dicitrate transport regulator FecR compare
PS417_05815 -0.7 -2.7 recombinase RecA compare
PS417_17240 -0.7 -1.7 trigger factor compare
PS417_13120 -0.7 -3.9 aspartyl beta-hydroxylase compare
PS417_18435 -0.7 -2.1 hypothetical protein compare
PS417_07165 -0.7 -2.4 dihydrodipicolinate synthase compare
PS417_04300 -0.7 -2.3 FagA protein compare
PS417_11930 -0.7 -4.0 hypothetical protein compare
PS417_21135 -0.7 -2.7 Asp/Glu/hydantoin racemase compare
PS417_14240 -0.7 -2.0 isochorismatase compare
PS417_16720 -0.7 -1.0 membrane protein compare
PS417_09150 -0.7 -1.5 energy transducer TonB compare
PS417_24775 -0.7 -2.2 dehydratase compare
PS417_00760 -0.7 -4.2 ShlB family hemolysin secretion/activation protein compare
PS417_08350 -0.7 -2.6 preprotein translocase subunit TatD compare
PS417_07865 -0.7 -1.4 hypothetical protein compare
PS417_23135 -0.7 -1.7 GTP-binding protein compare
PS417_11340 -0.7 -1.5 prevent-host-death protein compare
PS417_17400 -0.7 -3.1 TetR family transcriptional regulator compare
PS417_06895 -0.7 -2.7 DNA-binding protein compare
PS417_27865 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_21760 -0.7 -1.3 hypothetical protein compare
PS417_11485 -0.6 -1.7 AraC family transcriptional regulator compare
PS417_13140 -0.6 -0.9 oxidoreductase compare
PS417_09420 -0.6 -1.3 LysR family transcriptional regulator compare
PS417_26265 -0.6 -1.6 hypothetical protein compare
PS417_09545 -0.6 -2.1 aldehyde-activating protein compare
PS417_05825 -0.6 -1.9 cytochrome D ubiquinol oxidase subunit II compare
PS417_21855 -0.6 -2.0 hypothetical protein compare
PS417_10320 -0.6 -1.1 hypothetical protein compare
PS417_23385 -0.6 -3.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_15110 -0.6 -2.5 protein BatD compare
PS417_28515 -0.6 -1.6 16S rRNA methyltransferase compare
PS417_13950 -0.6 -2.2 LuxR family transcriptional regulator compare
PS417_07585 -0.6 -1.9 hypothetical protein compare
PS417_18055 -0.6 -1.0 general secretion pathway protein GspK compare
PS417_22085 -0.6 -1.7 aldehyde dehydrogenase compare
PS417_12695 -0.6 -3.4 mannitol dehydrogenase compare
PS417_28325 -0.6 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_01080 -0.6 -2.3 acyl-CoA dehydrogenase compare
PS417_13625 -0.6 -2.6 cytochrome B561 compare
PS417_11805 -0.6 -2.0 D-threo-aldose 1-dehydrogenase compare
PS417_01620 -0.6 -2.0 preprotein translocase subunit SecB compare
PS417_02065 -0.6 -2.4 membrane protein compare
PS417_01630 -0.6 -1.2 hypothetical protein compare
PS417_01550 -0.6 -2.8 cell envelope biogenesis protein AsmA compare
PS417_27135 -0.6 -0.8 glutamine synthetase compare
PS417_04450 -0.6 -3.6 hypothetical protein compare
PS417_07820 -0.6 -1.5 transposase compare
PS417_02440 -0.6 -2.0 flagellar motor protein MotB compare
PS417_24310 -0.6 -2.3 ankyrin compare
PS417_22260 -0.6 -1.8 segregation and condensation protein B compare
PS417_26470 -0.6 -1.5 cytochrome C compare
PS417_12390 -0.6 -1.8 hypothetical protein compare
PS417_22115 -0.6 -2.4 transcriptional regulator compare
PS417_23105 -0.6 -0.8 hypothetical protein compare
PS417_11615 -0.6 -1.3 urea ABC transporter ATP-binding protein compare
PS417_08925 -0.6 -1.7 membrane protein compare
PS417_16520 -0.6 -1.1 cold-shock protein compare
PS417_09160 -0.6 -1.6 GNAT family acetyltransferase compare
PS417_10855 -0.6 -2.8 chemotaxis protein CheY compare
PS417_23375 -0.6 -1.0 cytochrome C oxidase compare
PS417_12840 -0.6 -2.3 TetR family transcriptional regulator compare
PS417_19600 -0.6 -0.7 exonuclease compare
PS417_18270 -0.6 -2.5 alcohol dehydrogenase compare
PS417_08305 -0.6 -2.0 transcriptional regulator compare
PS417_20140 -0.6 -1.8 nucleoprotein/polynucleotide-associated enzyme compare
PS417_24935 -0.6 -0.8 hypothetical protein compare
PS417_09235 -0.5 -0.7 molecular chaperone compare
PS417_20775 -0.5 -2.4 coproporphyrinogen III oxidase compare
PS417_00310 -0.5 -2.1 cysteine synthase compare
PS417_05495 -0.5 -3.0 structural protein MipA compare
PS417_03685 -0.5 -1.4 FAD-dependent oxidoreductase compare
PS417_17015 -0.5 -1.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_25380 -0.5 -1.5 hypothetical protein compare
PS417_19720 -0.5 -0.7 DNA-binding protein compare
PS417_11965 -0.5 -1.6 GCN5 family acetyltransferase compare
PS417_22375 -0.5 -0.7 cold-shock protein compare
PS417_22620 -0.5 -2.2 pyruvate kinase compare
PS417_13965 -0.5 -1.4 acetoin utilization protein compare


Specific Phenotypes

For 11 genes in this experiment

For stress Tetracycline hydrochloride in Pseudomonas simiae WCS417

For stress Tetracycline hydrochloride across organisms