Experiment set3IT034 for Pseudomonas simiae WCS417

Compare to:

LB with Chloramphenicol 0.015 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_23770 -4.6 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_06770 -4.5 -10.4 multidrug transporter compare
PS417_06775 -4.2 -10.1 antibiotic transporter compare
PS417_04385 -3.7 -8.5 organic solvent ABC transporter substrate-binding protein compare
PS417_22450 -3.5 -3.2 ATP-dependent DNA helicase RuvA compare
PS417_07710 -3.0 -12.2 membrane protein compare
PS417_04380 -2.9 -2.9 ABC transporter permease compare
PS417_02720 -2.9 -2.3 TetR family transcriptional regulator compare
PS417_04390 -2.8 -7.7 toluene tolerance protein compare
PS417_05975 -2.6 -1.8 chemotaxis protein CheW compare
PS417_28070 -2.5 -9.0 phosphate ABC transporter ATP-binding protein compare
PS417_02555 -2.3 -15.3 exoribonuclease R compare
PS417_21480 -2.1 -2.3 23S rRNA pseudouridylate synthase compare
PS417_24155 -2.0 -3.2 ATP-binding protein compare
PS417_04375 -1.9 -4.3 ABC transporter ATP-binding protein compare
PS417_28080 -1.9 -8.8 phosphate ABC transporter permease compare
PS417_06395 -1.8 -3.7 amino acid transporter compare
PS417_20985 -1.7 -3.3 porin compare
PS417_02210 -1.7 -7.9 diguanylate cyclase compare
PS417_12595 -1.7 -2.7 transcriptional regulator compare
PS417_23095 -1.6 -1.9 exodeoxyribonuclease compare
PS417_02485 -1.6 -5.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27245 -1.6 -4.7 aminotransferase DegT compare
PS417_27300 -1.6 -1.3 cell division protein ZapA compare
PS417_27870 -1.5 -4.7 ATP-dependent DNA helicase RecG compare
PS417_23375 -1.3 -2.2 cytochrome C oxidase compare
PS417_27815 -1.3 -1.7 hypothetical protein compare
PS417_23385 -1.3 -5.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_23380 -1.3 -2.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_24615 -1.3 -1.7 hypothetical protein compare
PS417_27800 -1.3 -6.8 exodeoxyribonuclease III compare
PS417_15650 -1.2 -2.5 glutamine amidotransferase compare
PS417_26985 -1.2 -4.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04650 -1.2 -2.1 D-alanine--D-alanine ligase compare
PS417_04590 -1.1 -4.8 methyltransferase compare
PS417_08090 -1.1 -1.9 3-oxoacyl-ACP reductase compare
PS417_05815 -1.1 -3.9 recombinase RecA compare
PS417_02255 -1.1 -2.0 lipopolysaccharide kinase compare
PS417_17240 -1.1 -4.1 trigger factor compare
PS417_15030 -1.1 -1.6 short-chain dehydrogenase compare
PS417_23950 -1.0 -2.1 polynucleotide phosphorylase/polyadenylase compare
PS417_15390 -1.0 -2.6 hypothetical protein compare
PS417_23390 -1.0 -5.2 ubiquinol oxidase subunit II compare
PS417_15285 -1.0 -1.2 type VI secretion protein compare
PS417_28085 -1.0 -5.9 phosphate-binding protein compare
PS417_00370 -1.0 -1.3 hypothetical protein compare
PS417_08125 -1.0 -1.5 prephenate dehydratase compare
PS417_23900 -1.0 -6.1 poly(A) polymerase compare
PS417_19655 -1.0 -2.5 chemotaxis protein CheW compare
PS417_07510 -1.0 -5.0 aspartyl beta-hydroxylase compare
PS417_15100 -1.0 -2.8 BatB protein compare
PS417_02280 -1.0 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_19720 -1.0 -1.7 DNA-binding protein compare
PS417_09325 -0.9 -4.3 peptidase S41 compare
PS417_16715 -0.9 -1.3 DoxX family protein compare
PS417_12840 -0.9 -2.9 TetR family transcriptional regulator compare
PS417_15135 -0.9 -1.5 hypothetical protein compare
PS417_02270 -0.9 -3.1 carbamoyltransferase compare
PS417_06145 -0.9 -1.0 hypothetical protein compare
PS417_06635 -0.9 -1.6 ferredoxin compare
PS417_04270 -0.9 -5.1 ribonuclease G compare
PS417_05985 -0.9 -1.9 chemotaxis protein CheY compare
PS417_01600 -0.9 -2.9 peptidase M23 compare
PS417_18425 -0.9 -1.2 sporulation protein compare
PS417_17650 -0.8 -2.9 proteinase compare
PS417_02765 -0.8 -1.7 phosphate starvation-inducible protein PsiF compare
PS417_28075 -0.8 -2.0 phosphate ABC transporter permease compare
PS417_23775 -0.8 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_11520 -0.8 -3.3 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_24230 -0.8 -4.1 ATP-dependent protease compare
PS417_22445 -0.8 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_19415 -0.8 -2.9 allantoinase compare
PS417_11615 -0.8 -1.5 urea ABC transporter ATP-binding protein compare
PS417_00510 -0.8 -1.2 membrane protein compare
PS417_27705 -0.8 -1.7 amino acid dehydrogenase compare
PS417_27865 -0.8 -2.8 LysR family transcriptional regulator compare
PS417_00650 -0.8 -0.8 LysR family transcriptional regulator compare
PS417_28325 -0.8 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_17900 -0.8 -2.0 transcriptional regulator compare
PS417_22935 -0.8 -1.9 hypothetical protein compare
PS417_02475 -0.8 -2.2 N-acetylmuramoyl-L-alanine amidase compare
PS417_06530 -0.8 -1.7 membrane protein compare
PS417_24525 -0.8 -1.2 nuclease compare
PS417_22670 -0.8 -4.0 AraC family transcriptional regulator compare
PS417_24355 -0.7 -1.7 MFS transporter compare
PS417_19660 -0.7 -3.3 cobalamin biosynthesis protein CobQ compare
PS417_18020 -0.7 -1.6 hypothetical protein compare
PS417_24780 -0.7 -5.3 peptidase C13 compare
PS417_27795 -0.7 -0.8 orotate phosphoribosyltransferase compare
PS417_06895 -0.7 -3.0 DNA-binding protein compare
PS417_12565 -0.7 -1.7 2-dehydro-3-deoxygluconokinase compare
PS417_24500 -0.7 -1.5 DEAD/DEAH box helicase compare
PS417_07695 -0.7 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_15885 -0.7 -1.4 GCN5 family acetyltransferase compare
PS417_13375 -0.7 -4.8 LysR family transcriptional regulator compare
PS417_28515 -0.7 -2.5 16S rRNA methyltransferase compare
PS417_22190 -0.7 -5.0 diguanylate cyclase compare
PS417_18730 -0.7 -1.9 ABC transporter permease compare
PS417_02975 -0.7 -3.8 3-dehydroquinate dehydratase compare
PS417_08380 -0.7 -3.2 ABC transporter ATP-binding protein compare
PS417_05825 -0.7 -2.4 cytochrome D ubiquinol oxidase subunit II compare
PS417_24675 -0.7 -1.6 lipoyl synthase compare
PS417_19095 -0.7 -1.3 hypothetical protein compare
PS417_23250 -0.7 -4.0 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_21625 -0.7 -0.9 DNA-binding protein compare
PS417_05695 -0.7 -3.4 transcriptional regulator compare
PS417_04050 -0.7 -1.6 peptide ABC transporter ATP-binding protein compare
PS417_16195 -0.7 -0.8 AraC family transcriptional regulator compare
PS417_07385 -0.7 -4.1 2-hydroxyacid dehydrogenase compare
PS417_18800 -0.7 -2.4 hypothetical protein compare
PS417_23370 -0.7 -2.0 protoheme IX farnesyltransferase compare
PS417_15095 -0.7 -2.5 hypothetical protein compare
PS417_19625 -0.7 -2.0 histidine kinase compare
PS417_19605 -0.6 -1.0 hypothetical protein compare
PS417_07305 -0.6 -2.2 3-beta hydroxysteroid dehydrogenase compare
PS417_09245 -0.6 -1.2 recombinase RdgC compare
PS417_05010 -0.6 -1.2 IclR family transcriptional regulator compare
PS417_18690 -0.6 -2.4 aromatic amino acid aminotransferase compare
PS417_12730 -0.6 -1.1 glycosyltransferase compare
PS417_16885 -0.6 -1.5 hypothetical protein compare
PS417_26260 -0.6 -1.4 hypothetical protein compare
PS417_03300 -0.6 -3.0 alanine acetyltransferase compare
PS417_17160 -0.6 -1.3 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_13195 -0.6 -1.8 RND transporter MFP subunit compare
PS417_20170 -0.6 -2.2 hypothetical protein compare
PS417_00345 -0.6 -1.8 copper-binding protein compare
PS417_23135 -0.6 -1.6 GTP-binding protein compare
PS417_25700 -0.6 -1.8 cyclic AMP receptor protein compare
PS417_22875 -0.6 -1.3 hypothetical protein compare
PS417_05325 -0.6 -1.5 fimbrial protein compare
PS417_27435 -0.6 -2.7 polyphosphate kinase compare
PS417_18940 -0.6 -2.7 LysR family transcriptional regulator compare
PS417_17645 -0.6 -0.8 RND transporter compare
PS417_26805 -0.6 -0.8 cell division protein FtsE compare
PS417_03045 -0.6 -1.3 hypothetical protein compare
PS417_01715 -0.6 -1.3 hypothetical protein compare
PS417_15435 -0.6 -2.7 metallophosphatase compare
PS417_04835 -0.6 -1.3 hemolysin D compare
PS417_03460 -0.6 -1.7 type III secretion protein HrpI compare
PS417_00380 -0.6 -2.4 zinc ABC transporter ATP-binding protein compare
PS417_10455 -0.6 -2.2 membrane protein compare
PS417_12660 -0.6 -1.2 hypothetical protein compare
PS417_05445 -0.6 -0.9 DNA mismatch repair protein MutT compare
PS417_17215 -0.6 -2.6 peptidylprolyl isomerase compare
PS417_26800 -0.6 -3.3 cell division protein FtsX compare
PS417_02175 -0.6 -1.7 transcriptional regulator compare
PS417_26040 -0.6 -2.4 malate synthase compare
PS417_14925 -0.5 -1.6 2-methylcitrate dehydratase compare
PS417_07140 -0.5 -1.8 peptidase M48 compare
PS417_27890 -0.5 -2.1 type VI secretion protein compare
PS417_22165 -0.5 -2.4 LysR family transcriptional regulator compare
PS417_24385 -0.5 -1.8 tRNA (uracil-5-)-methyltransferase compare
PS417_19675 -0.5 -2.0 chemotaxis protein CheY compare
PS417_19350 -0.5 -2.3 GTP cyclohydrolase compare
PS417_15090 -0.5 -2.3 hypothetical protein compare
PS417_00085 -0.5 -1.0 16S rRNA methyltransferase compare
PS417_22825 -0.5 -2.4 hypothetical protein compare
PS417_23580 -0.5 -1.0 peptidylprolyl isomerase compare
PS417_26990 -0.5 -1.0 RNA pyrophosphohydrolase compare
PS417_00705 -0.5 -0.9 MarR family transcriptional regulator compare
PS417_04500 -0.5 -1.0 hypothetical protein compare
PS417_14655 -0.5 -0.9 lysine transporter LysE compare
PS417_20795 -0.5 -2.6 acyl-CoA dehydrogenase compare
PS417_10920 -0.5 -2.2 LysR family transcriptional regulator compare
PS417_26605 -0.5 -0.7 malonate decarboxylase subunit beta compare
PS417_12310 -0.5 -3.1 methionine synthase compare
PS417_22400 -0.5 -3.4 7-cyano-7-deazaguanine synthase compare
PS417_19160 -0.5 -2.5 hypothetical protein compare
PS417_22840 -0.5 -1.4 tRNA-Met compare
PS417_15305 -0.5 -1.3 type VI secretion protein compare
PS417_05900 -0.5 -1.4 TetR family transcriptional regulator compare
PS417_16490 -0.5 -1.3 cell division protein FtsK compare
PS417_05105 -0.5 -2.1 membrane protein compare
PS417_00180 -0.5 -1.0 tryptophan synthase subunit alpha compare
PS417_13190 -0.5 -3.4 transporter compare
PS417_08990 -0.5 -2.2 ABC transporter substrate-binding protein compare
PS417_12540 -0.5 -1.7 hypothetical protein compare
PS417_18265 -0.5 -1.3 AsnC family transcriptional regulator compare
PS417_17000 -0.5 -1.9 MerR family transcriptional regulator compare
PS417_24370 -0.5 -0.5 (2Fe-2S)-binding protein compare
PS417_17960 -0.5 -2.0 LysR family transcriptional regulator compare
PS417_26145 -0.5 -1.2 hypothetical protein compare
PS417_10170 -0.5 -2.5 hypothetical protein compare
PS417_17945 -0.5 -0.7 hypothetical protein compare
PS417_05830 -0.5 -1.6 hypothetical protein compare
PS417_24895 -0.5 -0.7 hypothetical protein compare
PS417_17835 -0.5 -1.6 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_15465 -0.5 -1.5 carboxynorspermidine decarboxylase compare
PS417_23475 -0.5 -0.9 hypothetical protein compare
PS417_24115 -0.5 -1.4 hypothetical protein compare
PS417_11400 -0.5 -0.6 phosphoglycerate mutase compare
PS417_09590 -0.5 -2.2 membrane protein compare
PS417_00870 -0.5 -2.2 hypothetical protein compare
PS417_01230 -0.5 -2.7 hypothetical protein compare
PS417_08580 -0.5 -2.7 histidine kinase compare
PS417_06345 -0.5 -2.0 pseudouridine synthase compare
PS417_08655 -0.5 -2.5 pseudouridine synthase compare
PS417_18530 -0.5 -3.0 O-succinylhomoserine sulfhydrylase compare
PS417_15480 -0.5 -1.0 ABC transporter substrate-binding protein compare
PS417_10220 -0.5 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress Chloramphenicol across organisms