Experiment set3IT034 for Pseudomonas simiae WCS417

Compare to:

LB with Chloramphenicol 0.015 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
PS417_08245 +1.7 3.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_03560 +1.6 3.3 GTP-binding protein compare
PS417_08230 +1.6 3.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_16555 +1.4 4.7 cupin compare
PS417_08190 +1.4 11.7 membrane protein compare
PS417_19725 +1.4 7.0 flagellar biosynthesis protein FlhB compare
PS417_13205 +1.3 3.7 isochorismate-pyruvate lyase compare
PS417_19740 +1.2 6.9 flagellar biosynthesis protein flip compare
PS417_08205 +1.2 5.9 acetyltransferase compare
PS417_21830 +1.2 4.0 TetR family transcriptional regulator compare
PS417_08200 +1.2 4.1 hypothetical protein compare
PS417_08225 +1.2 3.7 acetolactate synthase compare
PS417_19825 +1.1 7.8 ATPase AAA compare
PS417_21565 +1.1 5.7 flagellar basal body rod protein FlgC compare
PS417_20650 +1.0 7.0 hypothetical protein compare
PS417_21570 +1.0 5.6 flagellar basal body rod protein FlgB compare
PS417_07565 +1.0 2.7 hypothetical protein compare
PS417_19790 +1.0 2.3 ATP synthase compare
PS417_08025 +1.0 2.1 acetylornithine aminotransferase compare
PS417_21585 +1.0 5.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_08195 +0.9 6.1 hypothetical protein compare
PS417_05140 +0.9 2.9 dipicolinate synthase compare
PS417_21555 +0.9 6.0 flagellar hook protein FlgE compare
PS417_13735 +0.9 1.5 hypothetical protein compare
PS417_17840 +0.9 2.8 betaine-aldehyde dehydrogenase compare
PS417_18150 +0.9 3.4 chemotaxis protein CheY compare
PS417_19710 +0.9 6.6 flagellar biosynthesis protein FlhA compare
PS417_19795 +0.9 7.1 flagellar assembly protein FliH compare
PS417_14710 +0.9 2.1 isochorismatase compare
PS417_19695 +0.9 5.3 flagellar biosynthesis sigma factor compare
PS417_01410 +0.9 4.4 transporter compare
PS417_19765 +0.9 6.8 flagellar hook-length control protein compare
PS417_06780 +0.8 3.1 TetR family transcriptional regulator compare
PS417_08185 +0.8 3.5 glycosyl transferase compare
PS417_19745 +0.8 5.1 flagellar assembly protein FliO compare
PS417_20655 +0.8 6.0 group 1 glycosyl transferase compare
PS417_15875 +0.8 1.7 LuxR family transcriptional regulator compare
PS417_17785 +0.8 5.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_22690 +0.8 2.8 phosphogluconate dehydratase compare
PS417_11510 +0.8 1.7 AraC family transcriptional regulator compare
PS417_03260 +0.8 2.8 5S ribosomal RNA compare
PS417_06680 +0.8 5.4 nuclease PIN compare
PS417_20610 +0.8 1.4 hypothetical protein compare
PS417_19880 +0.7 3.6 flagellar basal body L-ring protein compare
PS417_18205 +0.7 2.3 aldehyde dehydrogenase compare
PS417_04225 +0.7 2.7 conjugal transfer protein TraR compare
PS417_09680 +0.7 1.8 hydrolase compare
PS417_06370 +0.7 0.8 cold-shock protein compare
PS417_25825 +0.7 2.5 sulfurtransferase compare
PS417_22810 +0.7 2.6 DNA base-flipping protein YbaZ compare
PS417_18445 +0.7 1.4 glycerol-3-phosphatase compare
PS417_01405 +0.7 1.9 sugar transporter compare
PS417_12190 +0.7 2.3 microcin ABC transporter ATP-binding protein compare
PS417_19865 +0.7 4.9 flagellar hook protein FlgK compare
PS417_19945 +0.7 3.9 MarR family transcriptional regulator compare
PS417_20310 +0.7 1.9 hypothetical protein compare
PS417_08180 +0.7 5.5 glycosyl transferase compare
PS417_08165 +0.7 5.4 UDP-glucose 4-epimerase compare
PS417_01290 +0.7 1.9 ADP-ribose diphosphatase compare
PS417_05500 +0.7 1.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_15400 +0.7 1.6 hypothetical protein compare
PS417_03455 +0.7 1.3 type III secretion protein compare
PS417_15495 +0.7 2.4 FAD-dependent oxidoreductase compare
PS417_01415 +0.7 3.9 glycosyl transferase family 1 compare
PS417_19785 +0.6 2.2 flagellar biogenesis protein compare
PS417_01390 +0.6 4.7 PbsX family transcriptional regulator compare
PS417_09205 +0.6 4.1 membrane protein compare
PS417_13640 +0.6 1.0 ribose ABC transporter permease compare
PS417_02560 +0.6 2.3 23S rRNA methyltransferase compare
PS417_11375 +0.6 1.3 hypothetical protein compare
PS417_24765 +0.6 2.4 membrane protein compare
PS417_01395 +0.6 5.4 biofilm formation protein PelB compare
PS417_20660 +0.6 4.2 hypothetical protein compare
PS417_19730 +0.6 2.2 flagellar biosynthesis protein FliR compare
PS417_16045 +0.6 1.1 acyl-CoA dehydrogenase compare
PS417_26760 +0.6 4.5 oxidase compare
PS417_12220 +0.6 1.2 hydroxyacylglutathione hydrolase compare
PS417_19735 +0.6 2.8 flagellar biosynthesis protein FliQ compare
PS417_06500 +0.6 1.5 hypothetical protein compare
PS417_08170 +0.6 4.4 capsular biosynthesis protein compare
PS417_19885 +0.6 2.1 flagellar basal body rod protein FlgG compare
PS417_21630 +0.6 1.6 magnesium transporter compare
PS417_20635 +0.6 0.8 ABC transporter ATP-binding protein compare
PS417_22630 +0.6 2.0 hypothetical protein compare
PS417_22620 +0.6 2.5 pyruvate kinase compare
PS417_12215 +0.6 3.9 lytic transglycosylase compare
PS417_16400 +0.6 1.6 NAD(P)H-quinone oxidoreductase compare
PS417_27045 +0.6 2.4 ATPase compare
PS417_05365 +0.6 1.4 FAD-binding protein compare
PS417_11420 +0.6 2.7 potassium transporter KefB compare
PS417_08620 +0.6 0.9 hypothetical protein compare
PS417_01400 +0.6 1.3 hypothetical protein compare
PS417_09505 +0.6 3.2 hypothetical protein compare
PS417_13140 +0.6 1.3 oxidoreductase compare
PS417_19870 +0.6 2.6 flagellar rod assembly protein FlgJ compare
PS417_22815 +0.6 3.3 permease compare
PS417_13395 +0.6 3.7 phosphoglucomutase compare
PS417_21070 +0.6 1.9 aconitate hydratase compare
PS417_11865 +0.6 1.8 xylose isomerase compare
PS417_01915 +0.6 1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21125 +0.6 3.6 phosphoadenosine phosphosulfate reductase compare
PS417_06375 +0.6 0.9 deoxycytidine triphosphate deaminase compare
PS417_15255 +0.6 1.5 serine/threonine protein kinase compare
PS417_14760 +0.5 2.4 membrane protein compare
PS417_21430 +0.5 1.5 3-oxoacyl-ACP synthase compare
PS417_10390 +0.5 1.7 RNA polymerase subunit sigma24 compare
PS417_10245 +0.5 0.9 hypothetical protein compare
PS417_25120 +0.5 1.7 capsular biosynthesis protein compare
PS417_20125 +0.5 1.7 phosphoribosylglycinamide formyltransferase compare
PS417_01005 +0.5 3.4 methionine ABC transporter substrate-binding protein compare
PS417_05400 +0.5 2.8 hypothetical protein compare
PS417_18400 +0.5 1.6 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_14080 +0.5 2.6 hypothetical protein compare
PS417_21255 +0.5 2.0 hypothetical protein compare
PS417_07985 +0.5 0.9 AbrB family transcriptional regulator compare
PS417_14185 +0.5 2.8 transcriptional regulator compare
PS417_06025 +0.5 2.3 alpha/beta hydrolase compare
PS417_27425 +0.5 3.7 exopolyphosphatase compare
PS417_23755 +0.5 1.9 membrane protein compare
PS417_08150 +0.5 1.9 hypothetical protein compare
PS417_20095 +0.5 4.3 hypothetical protein compare
PS417_27315 +0.5 0.9 hypothetical protein compare
PS417_20105 +0.5 4.7 glycosyl transferase compare
PS417_10870 +0.5 1.7 GABA permease compare
PS417_01435 +0.5 1.1 hypothetical protein compare
PS417_18105 +0.5 0.7 iron-dicitrate transporter substrate-binding subunit compare
PS417_19425 +0.5 0.6 allantoicase compare
PS417_19860 +0.5 4.3 flagellar hook protein FlgL compare
PS417_25790 +0.5 2.7 aminoglycoside phosphotransferase compare
PS417_00995 +0.5 1.5 alpha/beta hydrolase compare
PS417_16945 +0.5 1.4 LuxR family transcriptional regulator compare
PS417_06945 +0.5 0.8 membrane protein compare
PS417_19620 +0.5 1.1 hypothetical protein compare
PS417_20685 +0.5 2.3 CAAX protease compare
PS417_03905 +0.5 2.2 fimbrial protein compare
PS417_14140 +0.5 1.2 membrane protein compare
PS417_05155 +0.5 2.1 DNA polymerase III subunit chi compare
PS417_20670 +0.5 2.9 glycosyl transferase family 2 compare
PS417_15540 +0.5 1.0 NUDIX hydrolase compare
PS417_01420 +0.5 3.8 histidine kinase compare
PS417_16275 +0.5 1.5 hypothetical protein compare
PS417_14690 +0.5 3.2 chemotaxis protein compare
PS417_18810 +0.5 1.7 hypothetical protein compare
PS417_10050 +0.5 1.7 hypothetical protein compare
PS417_11770 +0.5 1.3 pyruvate dehydrogenase compare
PS417_16085 +0.5 2.5 LysR family transcriptional regulator compare
PS417_21595 +0.5 1.4 flagellar biosynthesis protein FlgN compare
PS417_04700 +0.5 2.3 RND transporter MFP subunit compare
PS417_16515 +0.5 1.2 Clp protease ClpS compare
PS417_00845 +0.5 1.2 transcriptional regulator compare
PS417_18455 +0.5 1.0 hypothetical protein compare
PS417_16965 +0.5 2.4 hypothetical protein compare
PS417_23360 +0.5 0.8 hypothetical protein compare
PS417_25095 +0.5 2.0 hypothetical protein compare
PS417_22060 +0.5 0.9 hypothetical protein compare
PS417_02700 +0.5 2.1 urease accessory protein UreG compare
PS417_19840 +0.5 2.8 flagellar cap protein FliD compare
PS417_00915 +0.5 2.4 aminotransferase compare
PS417_24225 +0.5 1.6 hypothetical protein compare
PS417_09610 +0.5 2.4 beta-xylosidase compare
PS417_19830 +0.5 1.2 flagellar assembly protein FliT compare
PS417_09220 +0.5 1.8 cupin compare
PS417_09085 +0.5 0.8 hypothetical protein compare
PS417_21865 +0.5 2.0 hypothetical protein compare
PS417_18125 +0.5 1.8 polar amino acid ABC transporter permease compare
PS417_01815 +0.5 1.0 peptide ABC transporter ATP-binding protein compare
PS417_23680 +0.5 2.6 AraC family transcriptional regulator compare
PS417_28280 +0.5 1.9 hypothetical protein compare
PS417_07620 +0.5 0.9 beta-hexosaminidase compare
PS417_10270 +0.5 1.8 transcriptional regulator compare
PS417_04365 +0.5 0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_20090 +0.5 3.4 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_03350 +0.5 1.6 cytochrome C peroxidase compare
PS417_15295 +0.5 2.9 Fis family transcriptional regulator compare
PS417_26525 +0.5 2.6 DEAD/DEAH box helicase compare
PS417_04865 +0.5 1.9 molybdenum cofactor biosynthesis protein MoaC compare
PS417_23310 +0.5 2.1 glyoxalase compare
PS417_08160 +0.5 2.2 hypothetical protein compare
PS417_12525 +0.5 2.0 hypothetical protein compare
PS417_27835 +0.5 3.0 endoribonuclease compare
PS417_13510 +0.5 0.7 polyketide cyclase compare
PS417_12745 +0.5 2.7 multidrug transporter compare
PS417_21515 +0.5 3.4 transcriptional regulator compare
PS417_21475 +0.5 1.4 HAD family hydrolase compare
PS417_00315 +0.5 2.1 MFS transporter compare
PS417_25390 +0.5 2.4 MFS transporter compare
PS417_09200 +0.4 2.2 ABC transporter compare
PS417_20930 +0.4 2.9 50S rRNA methyltransferase compare
PS417_06190 +0.4 1.6 sodium:proton antiporter compare
PS417_05635 +0.4 2.2 membrane protein compare
PS417_00975 +0.4 1.0 hypothetical protein compare
PS417_16870 +0.4 1.7 short-chain dehydrogenase compare
PS417_23995 +0.4 0.6 preprotein translocase subunit SecG compare
PS417_22210 +0.4 1.1 AraC family transcriptional regulator compare
PS417_21380 +0.4 1.9 GntR family transcriptional regulator compare
PS417_14425 +0.4 1.8 alkylhydroperoxidase compare
PS417_03120 +0.4 2.1 histidine kinase compare
PS417_00550 +0.4 0.8 hypothetical protein compare
PS417_27050 +0.4 1.8 ABC transporter substrate-binding protein compare
PS417_15750 +0.4 1.0 protease compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress Chloramphenicol across organisms