Experiment set3IT033 for Pseudomonas simiae WCS417

Compare to:

LB with Chloramphenicol 0.0075 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_04380 -3.8 -2.9 ABC transporter permease compare
PS417_23770 -3.7 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_06770 -3.4 -10.1 multidrug transporter compare
PS417_04375 -3.4 -4.7 ABC transporter ATP-binding protein compare
PS417_06775 -2.9 -8.1 antibiotic transporter compare
PS417_04385 -2.5 -7.1 organic solvent ABC transporter substrate-binding protein compare
PS417_07710 -2.3 -10.1 membrane protein compare
PS417_04390 -2.2 -8.6 toluene tolerance protein compare
PS417_28070 -1.9 -5.8 phosphate ABC transporter ATP-binding protein compare
PS417_27245 -1.9 -6.3 aminotransferase DegT compare
PS417_02385 -1.9 -2.0 esterase compare
PS417_08125 -1.8 -2.1 prephenate dehydratase compare
PS417_28080 -1.8 -9.8 phosphate ABC transporter permease compare
PS417_24155 -1.7 -2.7 ATP-binding protein compare
PS417_20985 -1.5 -3.7 porin compare
PS417_22450 -1.4 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_02280 -1.4 -2.1 GlcNAc-PI de-N-acetylase compare
PS417_23370 -1.4 -5.3 protoheme IX farnesyltransferase compare
PS417_02070 -1.4 -1.3 membrane protein compare
PS417_09695 -1.3 -1.8 hydrolase compare
PS417_11400 -1.3 -1.5 phosphoglycerate mutase compare
PS417_02485 -1.2 -5.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_12595 -1.2 -2.3 transcriptional regulator compare
PS417_02720 -1.2 -1.5 TetR family transcriptional regulator compare
PS417_02555 -1.2 -9.2 exoribonuclease R compare
PS417_28085 -1.2 -6.7 phosphate-binding protein compare
PS417_09915 -1.2 -1.8 hypothetical protein compare
PS417_07985 -1.2 -1.3 AbrB family transcriptional regulator compare
PS417_23390 -1.2 -5.6 ubiquinol oxidase subunit II compare
PS417_23385 -1.1 -5.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_00385 -1.1 -1.1 Fur family transcriptional regulator compare
PS417_14980 -1.1 -1.5 universal stress protein UspA compare
PS417_14755 -1.0 -2.2 UV damage repair endonuclease UvdE compare
PS417_05975 -1.0 -1.1 chemotaxis protein CheW compare
PS417_28515 -1.0 -3.4 16S rRNA methyltransferase compare
PS417_27870 -1.0 -2.8 ATP-dependent DNA helicase RecG compare
PS417_06030 -1.0 -2.5 hypothetical protein compare
PS417_08380 -1.0 -5.0 ABC transporter ATP-binding protein compare
PS417_27800 -1.0 -3.5 exodeoxyribonuclease III compare
PS417_19065 -1.0 -1.1 monooxygenase compare
PS417_22445 -1.0 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_27865 -1.0 -1.8 LysR family transcriptional regulator compare
PS417_11925 -0.9 -2.3 hypothetical protein compare
PS417_15325 -0.9 -1.5 type VI secretion protein compare
PS417_04650 -0.9 -1.5 D-alanine--D-alanine ligase compare
PS417_02270 -0.9 -2.3 carbamoyltransferase compare
PS417_22935 -0.9 -2.3 hypothetical protein compare
PS417_06945 -0.9 -1.0 membrane protein compare
PS417_02255 -0.9 -2.5 lipopolysaccharide kinase compare
PS417_01290 -0.9 -1.1 ADP-ribose diphosphatase compare
PS417_19720 -0.9 -1.3 DNA-binding protein compare
PS417_07305 -0.9 -2.7 3-beta hydroxysteroid dehydrogenase compare
PS417_17035 -0.9 -1.3 Cro/Cl family transcriptional regulator compare
PS417_22175 -0.9 -1.5 amino acid transporter LysE compare
PS417_19095 -0.9 -1.3 hypothetical protein compare
PS417_13255 -0.8 -1.6 ABC transporter compare
PS417_18730 -0.8 -2.8 ABC transporter permease compare
PS417_28075 -0.8 -3.9 phosphate ABC transporter permease compare
PS417_22210 -0.8 -1.5 AraC family transcriptional regulator compare
PS417_13545 -0.8 -1.5 arginine aminotransferase compare
PS417_18310 -0.8 -1.9 hypothetical protein compare
PS417_08090 -0.8 -1.4 3-oxoacyl-ACP reductase compare
PS417_13140 -0.8 -1.7 oxidoreductase compare
PS417_10445 -0.8 -2.7 LysR family transcriptional regulator compare
PS417_25985 -0.8 -1.8 dethiobiotin synthetase compare
PS417_06445 -0.8 -2.0 iron-siderophore ABC transporter permease compare
PS417_05065 -0.8 -1.9 hypothetical protein compare
PS417_27795 -0.7 -0.8 orotate phosphoribosyltransferase compare
PS417_18425 -0.7 -1.0 sporulation protein compare
PS417_15030 -0.7 -1.2 short-chain dehydrogenase compare
PS417_19190 -0.7 -2.2 BolA family transcriptional regulator compare
PS417_22300 -0.7 -1.2 LTXXQ domain protein compare
PS417_14605 -0.7 -1.5 adenylate kinase compare
PS417_04270 -0.7 -4.2 ribonuclease G compare
PS417_15885 -0.7 -1.2 GCN5 family acetyltransferase compare
PS417_13185 -0.7 -1.6 RND transporter compare
PS417_04365 -0.7 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27705 -0.7 -1.5 amino acid dehydrogenase compare
PS417_14280 -0.7 -1.9 hypothetical protein compare
PS417_15100 -0.7 -1.9 BatB protein compare
PS417_05560 -0.7 -1.2 ABC transporter compare
PS417_09210 -0.7 -0.9 TetR family transcriptional regulator compare
PS417_03920 -0.7 -1.7 dephospho-CoA kinase compare
PS417_03005 -0.7 -4.1 arginine decarboxylase compare
PS417_09325 -0.7 -3.7 peptidase S41 compare
PS417_22780 -0.7 -1.7 XRE family transcriptional regulator compare
PS417_23775 -0.7 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_24290 -0.7 -2.4 hypothetical protein compare
PS417_05825 -0.7 -2.7 cytochrome D ubiquinol oxidase subunit II compare
PS417_13050 -0.7 -1.6 N-acetylglucosamine-6-sulfatase compare
PS417_23250 -0.7 -3.5 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_16060 -0.7 -1.6 protein tolQ compare
PS417_03000 -0.7 -2.5 translation initiation factor Sui1 compare
PS417_22670 -0.7 -5.0 AraC family transcriptional regulator compare
PS417_19705 -0.6 -1.6 flagellar biosynthesis regulator FlhF compare
PS417_14940 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_06710 -0.6 -1.3 beta-ketoadipyl CoA thiolase compare
PS417_09235 -0.6 -0.8 molecular chaperone compare
PS417_13730 -0.6 -1.7 hypothetical protein compare
PS417_01400 -0.6 -1.6 hypothetical protein compare
PS417_23380 -0.6 -1.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_26260 -0.6 -1.1 hypothetical protein compare
PS417_18070 -0.6 -0.8 general secretion pathway protein GspH compare
PS417_09590 -0.6 -2.9 membrane protein compare
PS417_24500 -0.6 -2.3 DEAD/DEAH box helicase compare
PS417_26900 -0.6 -1.2 L-cystine transporter tcyP compare
PS417_17925 -0.6 -1.8 acyl-CoA dehydrogenase compare
PS417_06600 -0.6 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_01425 -0.6 -1.6 AraC family transcriptional regulator compare
PS417_14655 -0.6 -1.0 lysine transporter LysE compare
PS417_16495 -0.6 -1.8 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_19505 -0.6 -1.8 2,4-diaminobutyrate 4-aminotransferase compare
PS417_15095 -0.6 -1.4 hypothetical protein compare
PS417_06530 -0.6 -1.5 membrane protein compare
PS417_22570 -0.6 -0.7 H-NS histone compare
PS417_18775 -0.6 -2.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_02510 -0.6 -1.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22825 -0.6 -3.8 hypothetical protein compare
PS417_08510 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_14915 -0.6 -1.5 host specificity protein compare
PS417_27040 -0.6 -1.3 3-phosphoglycerate dehydrogenase compare
PS417_18025 -0.6 -2.1 cytochrome C compare
PS417_13375 -0.6 -3.5 LysR family transcriptional regulator compare
PS417_21085 -0.6 -2.6 GntR family transcriptional regulator compare
PS417_18690 -0.6 -2.0 aromatic amino acid aminotransferase compare
PS417_01825 -0.6 -1.6 chemotaxis protein compare
PS417_26850 -0.6 -0.6 twin-arginine translocation pathway signal protein compare
PS417_06730 -0.6 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_12740 -0.6 -2.1 secretion protein HlyD compare
PS417_11535 -0.6 -1.2 nicotinate phosphoribosyltransferase compare
PS417_21185 -0.6 -1.2 hypothetical protein compare
PS417_12400 -0.6 -1.5 oxidoreductase compare
PS417_16720 -0.6 -0.8 membrane protein compare
PS417_24580 -0.5 -2.0 pseudouridine synthase compare
PS417_12160 -0.5 -1.2 Fis family transcriptional regulator compare
PS417_12585 -0.5 -2.8 acriflavine resistance protein B compare
PS417_03655 -0.5 -1.5 short-chain dehydrogenase compare
PS417_04590 -0.5 -2.7 methyltransferase compare
PS417_17240 -0.5 -2.0 trigger factor compare
PS417_15895 -0.5 -1.1 iron dicitrate transport regulator FecR compare
PS417_11530 -0.5 -2.7 amidase compare
PS417_06895 -0.5 -2.1 DNA-binding protein compare
PS417_08410 -0.5 -1.6 hypothetical protein compare
PS417_15285 -0.5 -0.7 type VI secretion protein compare
PS417_17630 -0.5 -0.8 RNA polymerase sigma factor compare
PS417_06745 -0.5 -1.2 polysaccharide deacetylase compare
PS417_00455 -0.5 -1.5 hypothetical protein compare
PS417_07845 -0.5 -1.3 transcriptional regulator compare
PS417_22870 -0.5 -1.4 lipoprotein compare
PS417_23900 -0.5 -2.9 poly(A) polymerase compare
PS417_13245 -0.5 -2.0 saccharopine dehydrogenase compare
PS417_07510 -0.5 -2.1 aspartyl beta-hydroxylase compare
PS417_02895 -0.5 -1.5 precorrin-6Y C5,15-methyltransferase compare
PS417_08015 -0.5 -2.1 haloacid dehalogenase compare
PS417_03510 -0.5 -1.4 type III secretion system negative regulatory protein RspV compare
PS417_08135 -0.5 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26530 -0.5 -1.0 hypothetical protein compare
PS417_10095 -0.5 -1.0 hypothetical protein compare
PS417_18765 -0.5 -2.7 hypothetical protein compare
PS417_15465 -0.5 -1.4 carboxynorspermidine decarboxylase compare
PS417_27180 -0.5 -1.4 peroxidase compare
PS417_11615 -0.5 -1.1 urea ABC transporter ATP-binding protein compare
PS417_20250 -0.5 -2.2 copper resistance protein CopC compare
PS417_20960 -0.5 -2.8 Nitrate-binding regulatory protein (nasS) (from data) compare
PS417_24230 -0.5 -2.7 ATP-dependent protease compare
PS417_24270 -0.5 -2.2 threonine transporter RhtB compare
PS417_08545 -0.5 -0.9 aromatic ring-opening dioxygenase LigB compare
PS417_05815 -0.5 -1.9 recombinase RecA compare
PS417_24615 -0.5 -0.7 hypothetical protein compare
PS417_05785 -0.5 -1.8 tail protein compare
PS417_12670 -0.5 -1.3 hypothetical protein compare
PS417_22375 -0.5 -0.6 cold-shock protein compare
PS417_20825 -0.5 -0.9 drug:proton antiporter compare
PS417_21000 -0.5 -1.5 CrfX protein compare
PS417_03465 -0.5 -0.9 type III secretion protein compare
PS417_16490 -0.5 -1.1 cell division protein FtsK compare
PS417_06865 -0.5 -1.1 transporter compare
PS417_22400 -0.5 -2.8 7-cyano-7-deazaguanine synthase compare
PS417_06395 -0.5 -1.5 amino acid transporter compare
PS417_25220 -0.5 -2.3 iron-hydroxamate ABC transporter substrate-binding protein compare
PS417_17415 -0.5 -1.3 histidine kinase compare
PS417_06540 -0.5 -0.7 membrane protein compare
PS417_28405 -0.5 -1.3 hypothetical protein compare
PS417_03270 -0.5 -2.9 paraquat-inducible protein A compare
PS417_08730 -0.5 -1.2 cytochrome C compare
PS417_27460 -0.5 -2.4 hypothetical protein compare
PS417_05105 -0.5 -1.8 membrane protein compare
PS417_27435 -0.5 -2.0 polyphosphate kinase compare
PS417_26615 -0.5 -1.6 triphosphoribosyl-dephospho-CoA synthase compare
PS417_17830 -0.5 -1.2 4-hydroxyphenylacetate isomerase compare
PS417_19415 -0.5 -1.3 allantoinase compare
PS417_07470 -0.5 -0.9 hypothetical protein compare
PS417_10220 -0.5 -2.2 hypothetical protein compare
PS417_14105 -0.5 -0.8 6-O-methylguanine DNA methyltransferase compare
PS417_27595 -0.5 -1.5 recombinase XerC compare
PS417_24710 -0.5 -2.9 lipoprotein compare
PS417_16180 -0.5 -1.2 MFS transporter compare
PS417_04835 -0.5 -1.8 hemolysin D compare
PS417_08310 -0.5 -1.8 alpha/beta hydrolase compare
PS417_11120 -0.4 -1.5 UDP pyrophosphate phosphatase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress Chloramphenicol across organisms