Experiment set3IT033 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with benzoic acid 0.4 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_03870 +1.2 5.0 transcription elongation factor GreA compare
CA264_16130 +1.1 3.7 TetR family transcriptional regulator compare
CA264_21530 +1.1 3.3 four-helix bundle copper-binding protein compare
CA264_19925 +1.0 5.1 peptidyl-prolyl cis-trans isomerase compare
CA264_15255 +1.0 6.7 alpha/beta hydrolase compare
CA264_08945 +1.0 4.6 type 1 glutamine amidotransferase domain-containing protein compare
CA264_10535 +0.8 3.8 cyclic pyranopterin monophosphate synthase MoaC compare
CA264_15745 +0.8 1.0 tRNA-Arg compare
CA264_02025 +0.8 5.6 nitroreductase compare
CA264_07245 +0.8 5.7 hypothetical protein compare
CA264_20310 +0.8 3.5 TVP38/TMEM64 family protein compare
CA264_06355 +0.8 5.9 ergothioneine biosynthesis protein EgtB compare
CA264_10005 +0.8 2.7 hypothetical protein compare
CA264_20570 +0.8 2.3 inorganic pyrophosphatase compare
CA264_19215 +0.8 4.4 RNA polymerase subunit sigma compare
CA264_12160 +0.8 1.5 transcriptional regulator compare
CA264_01065 +0.8 3.2 MarR family transcriptional regulator compare
CA264_16580 +0.8 2.0 aminoacyl-tRNA hydrolase compare
CA264_20000 +0.7 1.6 cold-shock protein compare
CA264_15175 +0.7 1.1 biopolymer transporter ExbD compare
CA264_06330 +0.7 1.5 cation:proton antiporter compare
CA264_13015 +0.7 5.8 sensor histidine kinase compare
CA264_19150 +0.7 5.5 TonB dependent receptor compare
CA264_17800 +0.7 2.4 tRNA-Val compare
CA264_17565 +0.7 1.2 hypothetical protein compare
CA264_08950 +0.7 4.5 short-chain dehydrogenase/reductase compare
CA264_01990 +0.7 1.6 tRNA-Lys compare
CA264_13480 +0.7 1.9 hypothetical protein compare
CA264_01385 +0.7 4.8 iron ABC transporter substrate-binding protein compare
CA264_05300 +0.7 4.5 hypothetical protein compare
CA264_04770 +0.6 2.3 metal-dependent hydrolase compare
CA264_00935 +0.6 1.5 hypothetical protein compare
CA264_21065 +0.6 1.1 transcriptional regulator compare
CA264_02055 +0.6 0.5 hypothetical protein compare
CA264_10920 +0.6 4.2 helix-turn-helix-type transcriptional regulator compare
CA264_01425 +0.6 5.0 RelA/SpoT family protein compare
CA264_04475 +0.6 1.4 cold-shock protein compare
CA264_04460 +0.6 1.2 ABC transporter compare
CA264_15595 +0.6 4.3 hypothetical protein compare
CA264_12335 +0.6 3.7 pyridoxal phosphate-dependent aminotransferase compare
CA264_09340 +0.6 4.3 hypothetical protein compare
CA264_08955 +0.6 4.4 DNA polymerase IV compare
CA264_06700 +0.6 2.6 hypothetical protein compare
CA264_08780 +0.6 4.3 hypothetical protein compare
CA264_06450 +0.6 2.8 hypothetical protein compare
CA264_03905 +0.6 1.8 polysaccharide deacetylase family protein compare
CA264_18030 +0.6 3.6 cation transporter compare
CA264_19135 +0.5 1.5 hypothetical protein compare
CA264_02565 +0.5 1.9 hypothetical protein compare
CA264_20125 +0.5 2.8 hypothetical protein compare
CA264_20455 +0.5 3.2 LLM class flavin-dependent oxidoreductase compare
CA264_10955 +0.5 1.6 phenylacetate-CoA oxygenase subunit PaaJ compare
CA264_02595 +0.5 0.8 oxidoreductase compare
CA264_10875 +0.5 1.7 MerP protein compare
CA264_08805 +0.5 2.1 inosine/xanthosine triphosphatase compare
CA264_01390 +0.5 3.0 iron ABC transporter permease compare
CA264_02415 +0.5 2.1 dethiobiotin synthase compare
CA264_12175 +0.5 1.2 hypothetical protein compare
CA264_04285 +0.5 1.4 hypothetical protein compare
CA264_17830 +0.5 2.0 transcriptional regulator compare
CA264_10900 +0.5 3.0 hypothetical protein compare
CA264_14815 +0.5 0.8 transcriptional regulator compare
CA264_14160 +0.5 0.8 HupE / UreJ protein compare
CA264_00745 +0.5 2.6 ribonuclease III compare
CA264_16175 +0.5 2.1 hypothetical protein compare
CA264_08530 +0.5 1.9 hypothetical protein compare
CA264_14350 +0.5 3.0 hemolysin compare
CA264_11865 +0.5 2.1 hypothetical protein compare
CA264_14355 +0.5 2.2 hypothetical protein compare
CA264_15560 +0.5 1.7 CPBP family intramembrane metalloprotease compare
CA264_09190 +0.5 1.6 hypothetical protein compare
CA264_07260 +0.5 2.6 hypothetical protein compare
CA264_10980 +0.5 2.0 peptidase M23 compare
CA264_19060 +0.4 3.2 hypothetical protein compare
CA264_03465 +0.4 1.9 hypothetical protein compare
CA264_15670 +0.4 1.0 DUF4295 domain-containing protein compare
CA264_01795 +0.4 0.9 hypothetical protein compare
CA264_01870 +0.4 3.3 hypothetical protein compare
CA264_12995 +0.4 1.8 hypothetical protein compare
CA264_00900 +0.4 1.8 phosphonoacetate hydrolase compare
CA264_14360 +0.4 1.7 gamma carbonic anhydrase family protein compare
CA264_15235 +0.4 3.4 hypothetical protein compare
CA264_12855 +0.4 1.3 hypothetical protein compare
CA264_05235 +0.4 2.6 hypothetical protein compare
CA264_14755 +0.4 2.5 hypothetical protein compare
CA264_07030 +0.4 3.1 UDP-glucose 4-epimerase compare
CA264_00170 +0.4 1.6 ATP:cob(I)alamin adenosyltransferase compare
CA264_20095 +0.4 1.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA264_21335 +0.4 0.7 hypothetical protein compare
CA264_17855 +0.4 3.0 EamA family transporter compare
CA264_08540 +0.4 1.8 histidine phosphatase family protein compare
CA264_03985 +0.4 2.8 hypothetical protein compare
CA264_02185 +0.4 2.0 GNAT family N-acetyltransferase compare
CA264_11655 +0.4 0.7 hypothetical protein compare
CA264_14420 +0.4 2.4 hypothetical protein compare
CA264_20375 +0.4 0.8 hypothetical protein compare
CA264_18215 +0.4 1.0 hypothetical protein compare
CA264_20470 +0.4 2.6 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase compare
CA264_12155 +0.4 0.5 histidine phosphatase family protein compare
CA264_02070 +0.4 2.5 LLM class flavin-dependent oxidoreductase compare
CA264_19005 +0.4 3.1 SusC/RagA family TonB-linked outer membrane protein compare
CA264_01595 +0.4 3.0 hypothetical protein compare
CA264_00710 +0.4 2.3 hypothetical protein compare
CA264_11710 +0.4 1.4 DNA-binding protein compare
CA264_10325 +0.4 1.2 plasmid mobilization relaxosome protein MobC compare
CA264_02210 +0.4 2.6 AI-2E family transporter compare
CA264_14560 +0.4 1.3 VanZ family protein compare
CA264_06610 +0.4 1.6 iron-dependent repressor compare
CA264_18135 +0.4 2.1 ABC transporter ATP-binding protein compare
CA264_19995 +0.4 0.9 hypothetical protein compare
CA264_12520 +0.4 2.3 sodium:proton exchanger compare
CA264_14345 +0.4 1.8 hypothetical protein compare
CA264_13720 +0.4 1.6 hypothetical protein compare
CA264_20700 +0.4 2.5 hypothetical protein compare
CA264_14405 +0.4 1.3 hypothetical protein compare
CA264_16930 +0.4 1.1 hypothetical protein compare
CA264_16610 +0.4 2.1 hypothetical protein compare
CA264_00040 +0.4 3.2 hypothetical protein compare
CA264_10305 +0.4 0.4 hypothetical protein compare
CA264_17065 +0.4 1.7 hypothetical protein compare
CA264_16330 +0.4 2.0 hypothetical protein compare
CA264_14740 +0.4 2.4 dihydroorotase compare
CA264_04610 +0.4 3.0 chain length determinant protein compare
CA264_16425 +0.4 1.8 hypothetical protein compare
CA264_18235 +0.4 1.9 hypothetical protein compare
CA264_06925 +0.4 1.2 acetolactate synthase small subunit compare
CA264_16710 +0.4 1.0 transcriptional regulator compare
CA264_00465 +0.4 2.4 DNA mismatch repair protein MutT compare
CA264_09700 +0.4 0.4 hypothetical protein compare
CA264_05915 +0.4 2.0 hypothetical protein compare
CA264_16465 +0.4 1.3 hypothetical protein compare
CA264_20285 +0.4 0.5 hypothetical protein compare
CA264_12810 +0.4 2.1 hypothetical protein compare
CA264_13660 +0.4 1.6 putative DNA modification/repair radical SAM protein compare
CA264_05170 +0.4 2.1 phosphohydrolase compare
CA264_04590 +0.4 3.1 hypothetical protein compare
CA264_15005 +0.4 2.3 magnesium/cobalt efflux protein compare
CA264_06285 +0.4 1.2 N-acetyltransferase compare
CA264_12230 +0.4 1.6 hypothetical protein compare
CA264_15250 +0.4 1.4 cbs domain containing protein compare
CA264_20680 +0.4 1.6 hypothetical protein compare
CA264_15740 +0.3 2.4 metal-dependent phosphohydrolase compare
CA264_08410 +0.3 1.9 CRISPR-associated endonuclease Cas2 compare
CA264_02405 +0.3 2.1 beta-ketoacyl-ACP reductase compare
CA264_19010 +0.3 3.2 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_18790 +0.3 2.4 thymidine kinase compare
CA264_21050 +0.3 1.9 hypothetical protein compare
CA264_01780 +0.3 1.9 hypothetical protein compare
CA264_11715 +0.3 1.3 hypothetical protein compare
CA264_16500 +0.3 0.6 hypothetical protein compare
CA264_01815 +0.3 0.9 N-acetyltransferase compare
CA264_07890 +0.3 1.1 hypothetical protein compare
CA264_16335 +0.3 1.0 hypothetical protein compare
CA264_13890 +0.3 2.2 manganese catalase compare
CA264_13560 +0.3 0.9 membrane protein insertion efficiency factor YidD compare
CA264_15050 +0.3 3.0 3-hydroxyacyl-CoA dehydrogenase compare
CA264_03405 +0.3 1.5 hypothetical protein compare
CA264_19095 +0.3 1.0 hypothetical protein compare
CA264_06445 +0.3 0.9 NUDIX hydrolase compare
CA264_14065 +0.3 1.7 cyclopropane-fatty-acyl-phospholipid synthase compare
CA264_04820 +0.3 2.2 deoxyhypusine synthase compare
CA264_18210 +0.3 1.6 L-serine dehydratase, iron-sulfur-dependent subunit alpha compare
CA264_12630 +0.3 1.2 RDD family protein compare
CA264_00865 +0.3 1.5 dihydroorotate dehydrogenase (quinone) compare
CA264_02195 +0.3 1.1 dioxygenase compare
CA264_08665 +0.3 1.4 N-acetylmuramoyl-L-alanine amidase compare
CA264_16985 +0.3 1.1 hypothetical protein compare
CA264_09450 +0.3 1.5 hypothetical protein compare
CA264_00250 +0.3 2.1 hypothetical protein compare
CA264_18085 +0.3 1.6 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase compare
CA264_08870 +0.3 1.3 imidazolonepropionase compare
CA264_18860 +0.3 2.3 TIGR00374 family protein compare
CA264_16910 +0.3 1.7 hypothetical protein compare
CA264_17545 +0.3 2.4 single-stranded-DNA-specific exonuclease RecJ compare
CA264_16015 +0.3 1.7 DNA-binding protein compare
CA264_13665 +0.3 1.8 hypothetical protein compare
CA264_07775 +0.3 1.1 transcriptional regulator compare
CA264_02265 +0.3 1.5 phosphonate ABC transporter ATP-binding protein compare
CA264_20620 +0.3 2.1 mammalian cell entry protein compare
CA264_04740 +0.3 1.0 arsenate reductase (glutaredoxin) compare
CA264_09270 +0.3 1.8 tRNA-specific adenosine deaminase compare
CA264_05500 +0.3 0.8 hypothetical protein compare
CA264_02910 +0.3 1.1 hypothetical protein compare
CA264_17410 +0.3 2.3 hypothetical protein compare
CA264_21080 +0.3 2.0 heavy metal translocating P-type ATPase compare
CA264_06095 +0.3 0.5 hypothetical protein compare
CA264_02715 +0.3 1.1 UDP-glucose--dolichyl-phosphate glucosyltransferase compare
CA264_00515 +0.3 2.0 hypothetical protein compare
CA264_10945 +0.3 1.6 phenylacetic acid degradation b compare
CA264_06540 +0.3 2.3 hypothetical protein compare
CA264_07285 +0.3 2.6 alpha-amlyase compare
CA264_14675 +0.3 1.5 hypothetical protein compare
CA264_09160 +0.3 2.2 MBL fold metallo-hydrolase compare
CA264_17030 +0.3 2.4 hypothetical protein compare
CA264_04130 +0.3 1.7 hypothetical protein compare
CA264_11305 +0.3 1.8 transcriptional regulator compare
CA264_18825 +0.3 1.0 hypothetical protein compare
CA264_15425 +0.3 0.7 DUF4834 domain-containing protein compare
CA264_02670 +0.3 1.5 hypothetical protein compare
CA264_11725 +0.3 0.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress benzoic acid in Pontibacter actiniarum KMM 6156, DSM 19842

For stress benzoic acid across organisms