| | gene | name | fitness | t score | description | |
|---|
| b3979 | thrT | +2.0 | 2.0 | tRNA-Thr (NCBI) | compare |
| b3456 | livM | +1.8 | 10.9 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b3460 | livJ | +1.7 | 9.8 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b4172 | hfq | +1.7 | 3.5 | RNA-binding protein Hfq (NCBI) | compare |
| b2808 | gcvA | +1.6 | 7.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3454 | livF | +1.6 | 7.6 | ATP-binding component of leucine transport (VIMSS) | compare |
| b2904 | gcvH | +1.5 | 5.3 | glycine cleavage system protein H (NCBI) | compare |
| b0496 | ybbP | +1.5 | 9.7 | predicted inner membrane protein (NCBI) | compare |
| b1231 | tyrT | +1.5 | 0.4 | tRNA-Tyr (NCBI) | compare |
| b3455 | livG | +1.4 | 5.5 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b4443 | gcvB | +1.4 | 3.5 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4094 | phnN | +1.3 | 5.1 | ribose 1,5-bisphosphokinase (NCBI) | compare |
| b4096 | phnL | +1.3 | 4.1 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b4598 | yncL | +1.3 | 3.5 | hypothetical protein (RefSeq) | compare |
| b4097 | phnK | +1.3 | 5.1 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b4631 | ykgQ | +1.3 | 1.7 | no description | compare |
| b3457 | livH | +1.2 | 8.0 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b2903 | gcvP | +1.2 | 7.8 | glycine dehydrogenase (NCBI) | compare |
| b1007 | b1007 | +1.2 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b3261 | fis | +1.2 | 5.4 | DNA-binding protein Fis (NCBI) | compare |
| b2905 | gcvT | +1.2 | 6.8 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b0494 | tesA | +1.2 | 2.9 | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 (NCBI) | compare |
| b3458 | livK | +1.2 | 5.7 | leucine transporter subunit (NCBI) | compare |
| b1380 | ldhA | +1.2 | 2.4 | D-lactate dehydrogenase (NCBI) | compare |
| b4239 | treC | +1.2 | 5.1 | trehalose-6-P hydrolase (NCBI) | compare |
| b1360 | ydaV | +1.2 | 4.1 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b2688 | gshA | +1.1 | 6.4 | glutamate--cysteine ligase (NCBI) | compare |
| b0497 | rhsD | +1.1 | 8.5 | rhsD element protein (NCBI) | compare |
| b1332 | ynaJ | +1.1 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b0685 | ybfE | +1.1 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1150 | ymfR | +1.1 | 1.6 | e14 prophage; predicted protein (NCBI) | compare |
| b3229 | sspA | +1.1 | 4.5 | stringent starvation protein A (NCBI) | compare |
| b1842 | holE | +1.0 | 2.0 | DNA polymerase III, theta subunit (NCBI) | compare |
| b3523 | yhjE | +1.0 | 7.0 | predicted transporter (NCBI) | compare |
| b1438 | ydcQ | +1.0 | 3.0 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0505 | allA | +1.0 | 1.6 | ureidoglycolate hydrolase (NCBI) | compare |
| b4627 | ykfL | +1.0 | 4.1 | no description | compare |
| b4095 | phnM | +1.0 | 4.7 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b0271 | yagH | +1.0 | 3.7 | CP4-6 prophage; predicted xylosidase/arabinosidase (NCBI) | compare |
| b4098 | phnJ | +1.0 | 5.3 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b0493 | ybbO | +1.0 | 3.0 | short chain dehydrogenase (NCBI) | compare |
| b2236 | yfaE | +1.0 | 3.1 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b1279 | yciS | +0.9 | 0.3 | conserved inner membrane protein (NCBI) | compare |
| b1085 | b1085 | +0.9 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4529 | ydbJ | +0.9 | 1.3 | hypothetical protein (NCBI) | compare |
| b4676 | yoaK | +0.9 | 2.1 | expressed protein (RefSeq) | compare |
| b4595 | yciY | +0.9 | 1.9 | hypothetical protein (RefSeq) | compare |
| b2784 | relA | +0.9 | 5.1 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b1514 | lsrC | +0.9 | 1.5 | AI2 transporter (NCBI) | compare |
| b4695 | ykgT | +0.9 | 1.6 | no description | compare |
| b2017 | yefM | +0.9 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2007 | yeeX | +0.9 | 2.4 | conserved protein (RefSeq) | compare |
| b4090 | rpiB | +0.9 | 3.7 | ribose-5-phosphate isomerase B (NCBI) | compare |
| b1686 | ydiI | +0.9 | 2.7 | hypothetical protein (NCBI) | compare |
| b1942 | fliJ | +0.9 | 1.1 | flagellar biosynthesis chaperone (NCBI) | compare |
| b1550 | b1550 | +0.9 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1778 | yeaA | +0.9 | 3.4 | methionine sulfoxide reductase B (NCBI) | compare |
| b2939 | yqgB | +0.9 | 2.2 | predicted protein (RefSeq) | compare |
| b4163 | glyV | +0.8 | 2.0 | tRNA-Gly (NCBI) | compare |
| b0270 | yagG | +0.8 | 2.5 | CP4-6 prophage; predicted sugar transporter (NCBI) | compare |
| b1370 | insH-5 | +0.8 | 1.3 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b2317 | dedA | +0.8 | 2.8 | conserved inner membrane protein (NCBI) | compare |
| b1307 | pspD | +0.8 | 1.6 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b0272 | yagI | +0.8 | 3.3 | CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4487 | yjdP | +0.8 | 3.5 | hypothetical protein (NCBI) | compare |
| b0705 | ybfL | +0.8 | 3.1 | putative receptor protein (VIMSS) | compare |
| b4099 | phnI | +0.8 | 3.4 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b4087 | alsA | +0.8 | 5.1 | fused D-allose transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2012 | yeeD | +0.8 | 3.0 | hypothetical protein (NCBI) | compare |
| b0495 | ybbA | +0.8 | 2.3 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4092 | phnP | +0.8 | 4.0 | carbon-phosphorus lyase complex accessory protein (NCBI) | compare |
| b2673 | nrdH | +0.8 | 1.2 | glutaredoxin-like protein (NCBI) | compare |
| b4577 | sgrS | +0.8 | 2.1 | small antisense RNA (NCBI) | compare |
| b0504 | ybbS | +0.8 | 2.8 | DNA-binding transcriptional activator of the allD operon (NCBI) | compare |
| b0225 | yafQ | +0.8 | 3.9 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1141 | ymfG | +0.8 | 1.4 | e14 prophage; predicted excisionase (NCBI) | compare |
| b2586 | yfiM | +0.8 | 2.0 | predicted protein (RefSeq) | compare |
| b4647 | mokA | +0.8 | 1.6 | no description | compare |
| b2814 | metZ | +0.8 | 1.6 | tRNA-Met (NCBI) | compare |
| b0499 | ylbH | +0.8 | 5.2 | conserved protein, rhs-like (RefSeq) | compare |
| b2829 | ptsP | +0.8 | 4.9 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1427 | rimL | +0.8 | 2.7 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b4402 | yjjY | +0.8 | 1.5 | hypothetical protein (NCBI) | compare |
| b2343 | b2343 | +0.8 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2597 | yfiA | +0.8 | 1.8 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b1760 | ynjH | +0.7 | 3.1 | hypothetical protein (NCBI) | compare |
| b1727 | yniC | +0.7 | 1.5 | predicted hydrolase (NCBI) | compare |
| b2287 | nuoB | +0.7 | 2.5 | NADH dehydrogenase subunit B (NCBI) | compare |
| b0491 | ybbM | +0.7 | 4.0 | putative metal resistance protein (VIMSS) | compare |
| b1397 | paaJ | +0.7 | 3.7 | acetyl-CoA acetyltransferase (NCBI) | compare |
| b2248 | yfaX | +0.7 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2741 | rpoS | +0.7 | 2.4 | RNA polymerase sigma factor (NCBI) | compare |
| b1010 | ycdK | +0.7 | 2.5 | hypothetical protein (NCBI) | compare |
| b0822 | ybiV | +0.7 | 2.3 | predicted hydrolase (NCBI) | compare |
| b1531 | marA | +0.7 | 1.3 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b3500 | gor | +0.7 | 1.7 | glutathione reductase (NCBI) | compare |
| b0487 | cueR | +0.7 | 2.5 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b1827 | kdgR | +0.7 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0273 | argF | +0.7 | 2.6 | CP4-6 prophage; ornithine carbamoyltransferase 2, chain F (NCBI) | compare |
| b0059 | hepA | +0.7 | 4.9 | ATP-dependent helicase HepA (NCBI) | compare |
| b2061 | wzb | +0.7 | 1.8 | protein-tyrosine phosphatase (NCBI) | compare |
| b3670 | ilvN | +0.7 | 3.3 | acetolactate synthase small subunit (NCBI) | compare |
| b2531 | iscR | +0.7 | 1.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4202 | rpsR | +0.7 | 1.8 | 30S ribosomal protein S18 (NCBI) | compare |
| b1104 | ycfL | +0.7 | 2.3 | hypothetical protein (NCBI) | compare |
| b3199 | yrbK | +0.7 | 1.6 | hypothetical protein (NCBI) | compare |
| b4557 | yidD | +0.7 | 3.2 | hypothetical protein (NCBI) | compare |
| b4391 | yjjK | +0.7 | 4.5 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1642 | slyA | +0.7 | 1.1 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b0051 | ksgA | +0.7 | 3.5 | dimethyladenosine transferase (NCBI) | compare |
| b0236 | prfH | +0.7 | 3.7 | peptide chain release factor 2 (NCBI) | compare |
| b0249 | ykfF | +0.7 | 0.8 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b0404 | yajB | +0.7 | 2.4 | hypothetical protein (NCBI) | compare |
| b1317 | ycjU | +0.7 | 2.2 | predicted beta-phosphoglucomutase (NCBI) | compare |
| b1955 | yedP | +0.7 | 2.5 | hypothetical protein (NCBI) | compare |
| b2953 | yggU | +0.7 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2421 | cysM | +0.6 | 2.0 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b1008 | ycdI | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b4408 | csrB | +0.6 | 2.4 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b1882 | cheY | +0.6 | 1.2 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4093 | phnO | +0.6 | 1.7 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2490 | b2490 | +0.6 | 1.2 | putative protein processing element (VIMSS) | compare |
| b2390 | ypeC | +0.6 | 2.3 | hypothetical protein (NCBI) | compare |
| b1095 | fabF | +0.6 | 3.5 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2128 | yehW | +0.6 | 1.7 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1394 | paaG | +0.6 | 2.0 | enoyl-CoA hydratase (NCBI) | compare |
| b0872 | hcr | +0.6 | 3.3 | HCP oxidoreductase, NADH-dependent (NCBI) | compare |
| b1506 | yneL | +0.6 | 2.2 | predicted transcriptional regulator (NCBI) | compare |
| b1296 | ycjJ | +0.6 | 2.1 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1422 | ydcI | +0.6 | 2.4 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1960 | vsr | +0.6 | 2.2 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b4493 | gapC | +0.6 | 1.6 | no description | compare |
| b1605 | ydgI | +0.6 | 2.5 | predicted arginine/ornithine antiporter transporter (NCBI) | compare |
| b0490 | ybbL | +0.6 | 3.6 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2297 | pta | +0.6 | 1.4 | phosphate acetyltransferase (NCBI) | compare |
| b2705 | srlD | +0.6 | 2.7 | 3-ketoacyl-(acyl-carrier-protein) reductase (NCBI) | compare |
| b0268 | yagE | +0.6 | 1.6 | 2-keto-3-deoxy gluconate (KDG) aldolase; CP4-6 prophage (NCBI) | compare |
| b2199 | ccmC | +0.6 | 1.9 | heme exporter subunit (NCBI) | compare |
| b2419 | yfeK | +0.6 | 1.2 | hypothetical protein (NCBI) | compare |
| b1946 | fliN | +0.6 | 2.0 | flagellar motor switch protein (NCBI) | compare |
| b4089 | rpiR | +0.6 | 4.3 | transcriptional repressor of rpiB expression (VIMSS) | compare |
| b3113 | yhaR | +0.6 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4477 | dgoA | +0.6 | 2.3 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (NCBI) | compare |
| b0810 | glnP | +0.6 | 3.0 | glutamine ABC transporter permease protein (NCBI) | compare |
| b1475 | fdnH | +0.6 | 2.2 | formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI) | compare |
| b2432 | yfeY | +0.6 | 1.1 | hypothetical protein (NCBI) | compare |
| b4088 | alsB | +0.6 | 3.9 | D-allose transporter subunit (NCBI) | compare |
| b0492 | ybbN | +0.6 | 3.3 | putative thioredoxin-like protein (VIMSS) | compare |
| b4444 | rygA | +0.6 | 1.4 | unknown RNA (NCBI) | compare |
| b1011 | b1011 | +0.6 | 1.8 | putative synthetase (VIMSS) | compare |
| b0864 | artP | +0.6 | 1.4 | arginine transporter subunit (NCBI) | compare |
| b0187 | yaeR | +0.6 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0627 | tatE | +0.6 | 1.0 | twin arginine translocase protein E (NCBI) | compare |
| b4608 | ryfC | +0.6 | 2.0 | Novel sRNA, function unknown (RefSeq) | compare |
| b3863 | polA | +0.6 | 0.7 | DNA polymerase I (NCBI) | compare |
| b4416 | rybA | +0.6 | 0.3 | unknown RNA (NCBI) | compare |
| b2947 | gshB | +0.6 | 2.0 | glutathione synthetase (NCBI) | compare |
| b2204 | napH | +0.6 | 2.4 | quinol dehydrogenase membrane component (NCBI) | compare |
| b2051 | wcaH | +0.6 | 1.0 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b3866 | yihI | +0.6 | 2.2 | hypothetical protein (NCBI) | compare |
| b1072 | flgA | +0.6 | 1.8 | flagellar basal body P-ring biosynthesis protein A (NCBI) | compare |
| b4641 | yoeH | +0.6 | 2.2 | no description | compare |
| b0191 | yaeJ | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b1733 | chbG | +0.6 | 1.4 | hypothetical protein (NCBI) | compare |
| b4520 | ymgF | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b2209 | eco | +0.6 | 1.9 | ecotin precursor (NCBI) | compare |
| b1086 | rluC | +0.6 | 2.8 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b1487 | ddpA | +0.6 | 2.0 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b1560 | ydfU | +0.6 | 2.2 | Qin prophage; predicted protein (RefSeq) | compare |
| b4426 | isrA | +0.6 | 1.3 | unknown RNA (NCBI) | compare |
| b2114 | metG | +0.6 | 1.0 | methionyl-tRNA synthetase (NCBI) | compare |
| b0966 | hspQ | +0.6 | 1.8 | DNA-binding protein, hemimethylated (RefSeq) | compare |
| b2314 | dedD | +0.6 | 1.4 | putative lipoprotein (VIMSS) | compare |
| b3582 | sgbU | +0.5 | 1.3 | probable 3-hexulose-6-phosphate isomerase (VIMSS) | compare |
| b0226 | dinJ | +0.5 | 1.1 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b4101 | phnG | +0.5 | 1.3 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b2237 | inaA | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b2225 | yfaP | +0.5 | 2.9 | hypothetical protein (NCBI) | compare |
| b3574 | yiaJ | +0.5 | 2.5 | predicted DNA-binding transcriptional repressor (NCBI) | compare |
| b0520 | ylbF | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b1677 | lpp | +0.5 | 1.5 | murein lipoprotein (NCBI) | compare |
| b1989 | asnV | +0.5 | 1.3 | tRNA-Asn (NCBI) | compare |
| b2617 | smpA | +0.5 | 1.7 | small membrane protein A (VIMSS) | compare |
| b0339 | cynT | +0.5 | 1.4 | carbonic anhydrase (NCBI) | compare |
| b2141 | yohJ | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b1953 | b1953 | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2428 | yfeU | +0.5 | 1.9 | N-acetylmuramic acid-6-phosphate etherase (NCBI) | compare |
| b2700 | ygaD | +0.5 | 1.8 | competence damage-inducible protein A (NCBI) | compare |
| b0488 | ybbJ | +0.5 | 1.7 | conserved inner membrane protein (RefSeq) | compare |
| b2229 | b2229 | +0.5 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0486 | ybaT | +0.5 | 2.2 | predicted transporter (NCBI) | compare |
| b3676 | yidH | +0.5 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b2951 | yggS | +0.5 | 2.0 | predicted enzyme (NCBI) | compare |
| b2768 | ygcP | +0.5 | 1.2 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b1355 | b1355 | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4675 | yoaJ | +0.5 | 1.3 | expressed protein (RefSeq) | compare |
| b2944 | sprT | +0.5 | 2.9 | hypothetical protein (NCBI) | compare |
| b0260 | ykfD | +0.5 | 2.5 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1593 | b1593 | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0717 | ybgP | +0.5 | 1.9 | predicted assembly protein (NCBI) | compare |