Experiment set3IT032 for Agrobacterium fabrum C58

Compare to:

Hydantoin nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1359 -5.1 -2.1 dnaK deletion suppressor protein compare
Atu0679 -5.0 -9.5 ATP phosphoribosyltransferase compare
Atu0043 -4.7 -4.5 imidazoleglycerol-phosphate dehydratase compare
Atu0099 -4.2 -10.8 prephenate dehydratase compare
Atu0678 -4.1 -10.1 histidyl-tRNA synthetase compare
Atu0017 -4.0 -5.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0038 -4.0 -6.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0035 -3.6 -11.2 phosphoenolpyruvate carboxykinase compare
Atu1688 -3.5 -9.2 indole-3-glycerol-phosphate synthase compare
Atu0041 -3.5 -4.1 glutamine amidotransferase compare
Atu3739 -3.4 -4.7 phosphoglycerate kinase compare
Atu1687 -3.3 -11.2 anthranilate phosphoribosyltransferase compare
Atu2289 -3.3 -17.3 anthranilate synthase component I and II compare
Atu2791 -3.3 -11.9 3-isopropylmalate dehydrogenase compare
Atu2709 -3.3 -18.1 3-isopropylmalate dehydratase, large subunit compare
Atu2790 -3.2 -4.2 3-isopropylmalate dehydratase, small subunit compare
Atu0537 -3.2 -8.9 histidinol dehydrogenase compare
Atu3005 -3.2 -2.1 hypothetical protein compare
Atu1030 -3.2 -3.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1750 -3.1 -7.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu2264 -3.1 -12.4 2-isopropylmalate synthase compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3740 -2.8 -11.6 fructose bisphosphate aldolase compare
Atu3469 -2.8 -3.6 phosphoglyceromutase compare
Atu3885 -2.5 -8.7 inositol monophosphatase compare
Atu2036 -2.3 -14.1 acetolactate synthase III, large subunit compare
Atu3908 -2.1 -13.3 GntR family transcriptional regulator compare
Atu3783 -2.0 -12.8 glutamate synthase subunit beta compare
Atu0079 -2.0 -6.5 Atu0079-1 mutant of pfkB family carbohydrate kinase compare
Atu3784 -2.0 -16.8 glutamate synthase large subunit compare
Atu0039 -2.0 -2.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu4616 -1.9 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu1446 -1.8 -2.8 two component response regulator compare
Atu1463 -1.8 -6.5 glycine cleavage system component H compare
Atu4613 -1.7 -11.3 glycosyltransferase compare
Atu2650 -1.7 -8.5 glycerol-3-phosphate dehydrogenase compare
Atu1464 -1.6 -5.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu4773 -1.6 -2.9 two component response regulator compare
Atu0332 -1.6 -9.2 RNA polymerase sigma-54 factor compare
Atu4166 -1.6 -3.7 UDP-glucose 4-epimerase compare
Atu4617 -1.6 -7.2 dTDP-D-glucose-4,6-dehydratase compare
Atu0422 -1.5 -2.3 ABC transporter, membrane spanning protein compare
Atu0777 -1.5 -1.4 hypothetical protein compare
Atu1462 -1.4 -8.8 glycine cleavage system protein P2 compare
Atu1205 -1.4 -9.5 threonine dehydratase compare
Atu1028 -1.4 -3.0 hypothetical protein compare
Atu6189 -1.4 -0.8 protein secretion chaperone compare
Atu4618 -1.4 -9.4 dTDP-rhamnose-3,5-epimerase compare
Atu4615 -1.4 -7.4 glucose-1-phosphate thymidylyltransferase compare
Atu0026 -1.4 -1.5 hypothetical protein compare
Atu5451 -1.4 -0.8 hypothetical protein compare
Atu2183 -1.4 -6.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0029 -1.3 -4.6 S-adenosylhomocysteine hydrolase compare
Atu4711 -1.3 -5.1 two component sensor kinase compare
Atu4614 -1.3 -7.6 glycosyltransferase compare
Atu1588 -1.3 -6.3 homoserine dehydrogenase compare
Atu1620 -1.3 -8.0 triosephosphate isomerase compare
Atu4505 -1.2 -6.5 LacI family transcriptional regulator compare
Atu1770 -1.2 -7.1 glutamine synthetase compare
Atu0357 -1.2 -5.4 phosphate starvation inducible protein compare
Atu3496 -1.2 -3.6 hypothetical protein compare
Atu1140 -1.2 -3.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4897 -1.2 -1.3 hypothetical protein compare
Atu1850 -1.2 -2.3 phosphoribosylformylglycinamidine synthetase II compare
Atu1774 -1.2 -5.7 ABC transporter, substrate binding protein (peptide) compare
Atu4217 -1.1 -1.7 TetR family transcriptional regulator compare
Atu6153 -1.1 -1.8 conserved hypothetical protein compare
Atu3009 -1.1 -1.4 exopolysaccharide production protein compare
Atu0030 -1.1 -1.6 phosphocarrier protein HPr compare
Atu0647 -1.1 -6.0 phosphoribosylamine--glycine ligase compare
Atu8162 -1.1 -1.4 hypothetical protein compare
Atu2758 -1.1 -6.4 ammonium transporter compare
Atu3663 -1.0 -0.9 hypothetical protein compare
Atu0723 -0.9 -1.6 FAD dependent oxidoreductase compare
Atu2757 -0.9 -4.6 nitrogen regulatory protein PII compare
Atu0361 -0.9 -1.9 transcriptional regulator compare
Atu3754 -0.9 -4.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2123 -0.9 -3.7 methylenetetrahydrofolate reductase compare
Atu1581 -0.9 -2.4 hypothetical protein compare
Atu6195 -0.9 -1.7 conserved hypothetical protein compare
Atu0086 -0.8 -1.2 ribosome-binding factor A compare
Atu3634 -0.8 -2.9 penicillin-binding protein dacf precursor compare
Atu1141 -0.8 -3.5 Phosphoribosylglycinamide synthetase compare
Atu3311 -0.8 -6.1 phosphomannose isomerase compare
Atu3296 -0.8 -5.4 two component response regulator for C4-dicarboxylate transport compare
Atu0190 -0.8 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2017 -0.8 -1.2 hypothetical protein compare
Atu1844 -0.8 -1.9 Phosphoribosylformylglycinamidine synthetase compare
Atu4391 -0.8 -1.5 nitric oxide reductase NorE protein compare
Atu1457 -0.8 -1.3 hypothetical protein compare
Atu6157 -0.8 -1.8 conserved hypothetical protein compare
Atu3298 -0.8 -4.5 C4-dicarboxylate transporter DctA compare
Atu3353 -0.8 -4.3 mannose-1-phosphate guanylyltransferase compare
Atu3468 -0.8 -0.9 hypothetical protein compare
Atu2777 -0.8 -5.3 hypothetical protein compare
Atu1075 -0.8 -3.8 amidophosphoribosyltransferase compare
Atu0755 -0.7 -2.5 hypothetical protein compare
Atu2677 -0.7 -2.3 protein tyrosine phosphatase compare
Atu2376 -0.7 -0.5 hypothetical protein compare
Atu1086 -0.7 -5.0 MFS permease compare
Atu1845 -0.7 -2.0 phosphoribosylformylglycinamidine synthase I compare
Atu1369 -0.7 -2.3 HIT family protein compare
Atu3999 -0.7 -2.2 dithiobiotin synthetase compare
Atu3755 -0.7 -2.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0977 -0.7 -3.3 serine protease DO-like protease compare
Atu3008 -0.7 -0.8 hypothetical protein compare
Atu1219 -0.7 -0.9 hypothetical protein compare
Atu3297 -0.7 -4.2 two component sensor kinase for C4-dicarboxylate transport compare
Atu2800 -0.7 -2.4 precorrin-3B C17-methyltransferase compare
Atu4226 -0.7 -4.1 transcriptional regulator compare
Atu1163 -0.7 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3012 -0.6 -1.5 hypothetical protein compare
Atu1354 -0.6 -1.1 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2140 -0.6 -2.6 hypothetical protein compare
Atu0400 -0.6 -2.9 orotate phosphoribosyltransferase compare
Atu4890 -0.6 -1.2 IS426 transposase compare
Atu0184 -0.6 -2.0 glucokinase compare
Atu6121 -0.6 -2.4 conserved hypothetical protein compare
Atu4884 -0.6 -2.4 hypothetical protein compare
Atu8168 -0.6 -1.4 hypothetical protein compare
Atu6197 -0.6 -1.5 agrocinopine phosphodiesterase compare
Atu0421 -0.6 -1.0 ABC transporter, membrane spanning protein compare
Atu4161 -0.6 -0.9 hypothetical protein compare
Atu8087 -0.6 -0.8 putative peptidoglycan binding protein compare
Atu3413 -0.6 -1.8 AsnC family transcriptional regulator compare
Atu0419 -0.6 -1.3 two component sensor kinase compare
Atu2077 -0.6 -2.2 DNA polymerase III, epsilon subunit compare
Atu2555 -0.6 -1.9 L-lysine 2,3-aminomutase compare
Atu1223 -0.6 -0.9 hypothetical protein compare
Atu4892 -0.6 -4.2 hypothetical protein compare
Atu0803 -0.6 -4.5 pyruvate,orthophosphate dikinase compare
Atu4317 -0.6 -2.0 TetR family transcriptional regulator compare
Atu3121 -0.6 -1.0 cold shock protein compare
Atu6039 -0.6 -1.3 conjugal transfer protein compare
Atu8052 -0.6 -0.6 hypothetical protein compare
Atu5145 -0.6 -0.9 acetyltransferase compare
Atu4345 -0.6 -1.4 hypothetical protein compare
Atu4290 -0.6 -1.4 hypothetical protein compare
Atu0690 -0.6 -1.9 hypothetical protein compare
Atu4873 -0.6 -3.5 TetR family transcriptional regulator compare
Atu6051 -0.6 -2.2 conserved hypothetical protein compare
Atu2352 -0.6 -1.5 hypothetical protein compare
Atu3763 -0.6 -1.1 hypothetical protein compare
Atu6091 -0.6 -1.9 conserved hypothetical protein compare
Atu1456 -0.5 -3.7 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2728 -0.5 -2.3 beta (1-->2) glucan export ATP-binding protein compare
Atu1087 -0.5 -3.3 secretion protein compare
Atu2028 -0.5 -1.6 transcriptional regulator, ArsR family compare
Atu5540 -0.5 -0.3 hypothetical protein compare
Atu3014 -0.5 -1.1 hypothetical protein compare
Atu3912 -0.5 -3.0 hypothetical protein compare
Atu0149 -0.5 -1.4 enoyl-(acyl-carrier-protein) reductase compare
Atu5043 -0.5 -1.3 hypothetical protein compare
Atu0168 -0.5 -2.5 guanylate kinase compare
Atu0786 -0.5 -2.0 peptidase, family M16 compare
Atu6009 -0.5 -1.0 indole-3-lactate synthase compare
Atu4610 -0.5 -3.8 sugar nucleotide epimerase/dehydratase compare
Atu2786 -0.5 -2.0 hypothetical protein compare
Atu8191 -0.5 -0.9 hypothetical protein compare
Atu1573 -0.5 -1.1 hypothetical protein compare
Atu5538 -0.5 -1.9 hypothetical protein compare
Atu5045 -0.5 -0.4 hypothetical protein compare
Atu4609 -0.5 -4.0 glycosyltransferase compare
Atu5504 -0.5 -1.2 hypothetical protein compare
Atu4881 -0.5 -2.6 hypothetical protein compare
Atu3023 -0.5 -3.1 sugar ABC transporter permease compare
Atu2824 -0.5 -2.3 hypothetical protein compare
Atu0940 -0.5 -1.6 PemK protein compare
Atu1454 -0.5 -2.7 siroheme synthase compare
Atu4502 -0.5 -2.6 cobalamin synthesis protein compare
Atu2067 -0.5 -0.6 hypothetical protein compare
Atu0815 -0.5 -1.2 hypothetical protein compare
Atu4608 -0.5 -3.8 hypothetical protein compare
Atu2184 -0.5 -2.6 transcriptional regulator, AsnC family compare
Atu2408 -0.5 -2.8 urease accessory protein compare
Atu3022 -0.5 -3.0 sugar ABC transporter permease compare
Atu0885 -0.5 -2.0 hypothetical protein compare
Atu5116 -0.5 -1.8 transcriptional regulator protein compare
Atu2407 -0.5 -1.7 urease gamma subunit compare
Atu0533 -0.5 -0.6 putative inhibitor of septum formation compare
Atu6135 -0.5 -2.2 Sucrose phosphorylase-like protein compare
Atu2025 -0.5 -1.8 transcriptional regulator compare
Atu6134 -0.5 -1.5 transcriptional regulator compare
Atu8088 -0.5 -1.0 hypothetical protein compare
Atu3018 -0.5 -1.9 hypothetical protein compare
Atu1077 -0.5 -1.8 DNA repair protein compare
Atu6165 -0.5 -0.2 hypothetical protein compare
Atu5473 -0.5 -1.7 D-alanine aminotransferase compare
Atu1686 -0.5 -3.7 peptidyl-prolyl cis-trans isomerse D compare
Atu0536 -0.5 -2.6 hypothetical protein compare
Atu2821 -0.5 -2.4 transcriptional regulator, GntR family compare
Atu2317 -0.4 -2.0 hypothetical protein compare
Atu3036 -0.4 -1.7 dipeptide ABC transporter permease compare
Atu1584 -0.4 -2.1 hypothetical protein compare
Atu6146 -0.4 -1.6 conserved hypothetical protein compare
Atu5544 -0.4 -1.4 hypothetical protein compare
Atu6030 -0.4 -1.3 ORF13 hypothetical protein compare
Atu3026 -0.4 -2.0 short chain dehydrogenase compare
Atu2248 -0.4 -1.3 hypothetical protein compare
Atu4870 -0.4 -2.6 NADP-dependent quinone oxidoreductase compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Hydantoin in Agrobacterium fabrum C58

For nitrogen source Hydantoin across organisms