Experiment set3IT031 for Agrobacterium fabrum C58

Compare to:

3-aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0041 -5.4 -3.7 glutamine amidotransferase compare
Atu3707 -5.2 -5.6 phosphoserine aminotransferase compare
Atu0099 -5.0 -15.5 prephenate dehydratase compare
Atu0017 -5.0 -4.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3706 -4.9 -12.6 D-3-phosphoglycerate dehydrogenase compare
Atu0035 -4.6 -13.0 phosphoenolpyruvate carboxykinase compare
Atu0043 -4.6 -4.5 imidazoleglycerol-phosphate dehydratase compare
Atu3469 -4.5 -4.3 phosphoglyceromutase compare
Atu1687 -4.4 -10.1 anthranilate phosphoribosyltransferase compare
Atu2040 -4.4 -7.8 phosphoserine phosphatase compare
Atu1750 -4.3 -10.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu1030 -4.3 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1688 -4.3 -11.7 indole-3-glycerol-phosphate synthase compare
Atu0537 -4.2 -10.0 histidinol dehydrogenase compare
Atu0679 -4.1 -10.3 ATP phosphoribosyltransferase compare
Atu2289 -4.1 -19.1 anthranilate synthase component I and II compare
Atu3740 -4.1 -12.5 fructose bisphosphate aldolase compare
Atu2264 -3.8 -14.0 2-isopropylmalate synthase compare
Atu1359 -3.8 -2.1 dnaK deletion suppressor protein compare
Atu2709 -3.7 -19.6 3-isopropylmalate dehydratase, large subunit compare
Atu4505 -3.7 -11.8 LacI family transcriptional regulator compare
Atu0678 -3.6 -8.1 histidyl-tRNA synthetase compare
Atu1446 -3.5 -5.1 two component response regulator compare
Atu3783 -3.4 -20.6 glutamate synthase subunit beta compare
Atu0346 -3.4 -4.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0038 -3.4 -6.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1850 -3.3 -7.3 phosphoribosylformylglycinamidine synthetase II compare
Atu0399 -3.3 -9.0 dihydroorotase compare
Atu2650 -3.3 -17.1 glycerol-3-phosphate dehydrogenase compare
Atu0030 -3.3 -2.6 phosphocarrier protein HPr compare
Atu1620 -3.2 -17.2 triosephosphate isomerase compare
Atu3329 -3.2 -12.8 beta alanine--pyruvate transaminase conserved
Atu1588 -3.2 -11.4 homoserine dehydrogenase compare
Atu2790 -3.2 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu0486 -3.1 -9.3 dihydroorotate dehydrogenase compare
Atu4674 -3.1 -14.4 GntR family transcriptional regulator compare
Atu0432 -3.0 -11.4 O-succinylhomoserine sulfhydrylase compare
Atu1140 -3.0 -4.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3293 -3.0 -10.3 D-amino acid dehydrogenase small subunit compare
Atu0332 -3.0 -12.0 RNA polymerase sigma-54 factor compare
Atu1308 -2.9 -7.9 aspartate carbamoyl transferase catalytic subunit compare
Atu2036 -2.9 -15.1 acetolactate synthase III, large subunit compare
Atu3784 -2.9 -20.8 glutamate synthase large subunit compare
Atu1205 -2.9 -14.0 threonine dehydratase compare
Atu1141 -2.8 -8.2 Phosphoribosylglycinamide synthetase compare
Atu2791 -2.8 -9.2 3-isopropylmalate dehydrogenase compare
Atu1845 -2.8 -4.1 phosphoribosylformylglycinamidine synthase I compare
Atu0400 -2.8 -7.8 orotate phosphoribosyltransferase compare
Atu3328 -2.7 -12.7 aldehyde dehydrogenase compare
Atu2747 -2.7 -16.2 hypothetical protein compare
Atu3739 -2.7 -2.8 phosphoglycerate kinase compare
Atu3885 -2.7 -9.9 inositol monophosphatase compare
Atu3291 -2.7 -10.2 Lpr family transcriptional regulator compare
Atu0876 -2.7 -3.1 superoxide dismutase compare
Atu1445 -2.6 -8.9 two component sensor kinase compare
Atu2718 -2.6 -9.0 homoserine O-succinyltransferase compare
Atu3755 -2.6 -7.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0298 -2.6 -7.6 orotidine 5 compare
Atu2209 -2.6 -7.6 pyrroline-5-carboxylate reductase compare
Atu3754 -2.5 -9.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0723 -2.5 -3.3 FAD dependent oxidoreductase compare
Atu2015 -2.4 -14.1 aminotransferase compare
Atu0647 -2.4 -8.2 phosphoribosylamine--glycine ligase compare
Atu2115 -2.4 -14.6 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1307 -2.4 -6.7 dihydroorotase compare
Atu1844 -2.4 -4.1 Phosphoribosylformylglycinamidine synthetase compare
Atu1075 -2.3 -8.8 amidophosphoribosyltransferase compare
Atu1577 -2.3 -7.6 ABC transporter, substrate binding protein (amino acid) compare
Atu4173 -2.3 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu1580 -2.3 -13.0 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu0040 -2.3 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3292 -2.2 -11.2 alanine racemase compare
Atu1456 -2.1 -11.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1578 -2.1 -7.5 ABC transporter, membrane spanning protein (amino acid) compare
Atu3297 -2.1 -13.1 two component sensor kinase for C4-dicarboxylate transport compare
Atu1686 -2.1 -13.8 peptidyl-prolyl cis-trans isomerse D compare
Atu1454 -2.0 -7.8 siroheme synthase compare
Atu1579 -2.0 -11.5 ABC transporter, membrane spanning protein (amino acid) compare
Atu3296 -1.9 -10.6 two component response regulator for C4-dicarboxylate transport compare
Atu3298 -1.9 -10.0 C4-dicarboxylate transporter DctA compare
Atu0039 -1.7 -2.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu3482 -1.7 -8.4 pantoate--beta-alanine ligase compare
Atu0777 -1.7 -1.6 hypothetical protein compare
Atu0769 -1.7 -2.2 protoheme IX farnesyltransferase compare
Atu2640 -1.7 -5.9 hypothetical protein compare
Atu5430 -1.7 -1.0 hypothetical protein compare
Atu3483 -1.5 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0225 -1.5 -1.4 hypothetical protein compare
Atu2155 -1.5 -11.3 methionine synthase compare
Atu1455 -1.4 -4.2 hypothetical protein compare
Atu8056 -1.4 -1.7 hypothetical protein compare
Atu4711 -1.4 -4.6 two component sensor kinase compare
Atu1589 -1.3 -5.7 aminotransferase, class I compare
Atu3908 -1.3 -9.6 GntR family transcriptional regulator compare
Atu2548 -1.3 -10.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3731 -1.2 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu3912 -1.2 -5.7 hypothetical protein compare
Atu1339 -1.2 -3.5 ribonuclease E compare
Atu1457 -1.2 -1.6 hypothetical protein compare
Atu2376 -1.2 -1.0 hypothetical protein compare
Atu6114 -1.1 -1.2 hypothetical protein compare
Atu5164 -1.1 -0.8 type IV secretion protein AvhB3 compare
Atu1462 -1.1 -6.8 glycine cleavage system protein P2 compare
Atu1810 -1.1 -1.5 hypothetical protein compare
Atu1327 -1.1 -3.4 NADH-ubiquinone oxidoreductase compare
Atu4773 -1.1 -1.6 two component response regulator compare
Atu1774 -1.1 -5.9 ABC transporter, substrate binding protein (peptide) compare
Atu1364 -1.1 -4.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu6098 -1.0 -0.6 transcriptional regulator, HTH family compare
Atu3121 -1.0 -1.7 cold shock protein compare
Atu1149 -1.0 -1.8 adenylate cyclase compare
Atu0641 -1.0 -3.3 hypothetical protein compare
Atu3290 -1.0 -5.9 phosphomethylpyrimidine kinase compare
Atu0953 -1.0 -1.1 hypothetical protein compare
Atu1163 -1.0 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1372 -0.9 -3.6 hypothetical protein compare
Atu0361 -0.9 -2.4 transcriptional regulator compare
Atu3730 -0.9 -1.4 hypothetical protein compare
Atu0031 -0.9 -1.4 PTS system, IIA component compare
Atu4702 -0.9 -4.5 GntR family transcriptional regulator compare
Atu0189 -0.9 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu5045 -0.9 -1.6 hypothetical protein compare
Atu8115 -0.8 -4.2 Hypothetical Protein compare
Atu2569 -0.8 -6.2 thiamine biosynthesis protein compare
Atu4881 -0.8 -3.9 hypothetical protein compare
Atu1028 -0.8 -1.9 hypothetical protein compare
Atu0941 -0.8 -1.0 hypothetical protein compare
Atu3913 -0.8 -5.4 biotin carboxylase compare
Atu0533 -0.8 -1.1 putative inhibitor of septum formation compare
Atu3561 -0.8 -1.5 hypothetical protein compare
Atu1463 -0.8 -4.5 glycine cleavage system component H compare
Atu1685 -0.8 -1.0 hypothetical protein compare
Atu3288 -0.8 -4.6 hydroxyethylthiazole kinase compare
Atu0029 -0.8 -3.7 S-adenosylhomocysteine hydrolase compare
Atu4887 -0.8 -2.7 hypothetical protein compare
Atu2728 -0.8 -3.1 beta (1-->2) glucan export ATP-binding protein compare
Atu0331 -0.8 -1.9 sigma-54 modulation protein compare
Atu2207 -0.7 -1.3 two component sensor kinase compare
Atu2428 -0.7 -4.7 exopolysaccharide production protein PssB compare
Atu2710 -0.7 -3.9 hypothetical protein compare
Atu1848 -0.7 -3.6 transcriptional regulator, GntR family compare
Atu1581 -0.7 -1.9 hypothetical protein compare
Atu0654 -0.7 -3.9 transcriptional regulator, LysR family compare
Atu6123 -0.7 -2.6 conserved hypothetical protein compare
Atu1737 -0.7 -1.8 hypothetical protein compare
Atu1464 -0.7 -3.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu0141 -0.7 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu0190 -0.7 -3.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4096 -0.7 -3.1 nicotinate-nucleotide pyrophosphorylase compare
Atu4884 -0.7 -2.4 hypothetical protein compare
Atu2183 -0.7 -3.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4873 -0.7 -4.4 TetR family transcriptional regulator compare
Atu8088 -0.7 -1.5 hypothetical protein compare
Atu2427 -0.7 -4.0 ABC transporter, membrane spanning protein compare
Atu2678 -0.7 -2.8 2'-5' RNA ligase compare
Atu3036 -0.7 -3.1 dipeptide ABC transporter permease compare
Atu3495 -0.7 -4.8 diguanylate cyclase compare
Atu1444 -0.7 -2.5 nitrogen regulation protein compare
Atu5034 -0.7 -1.5 hypothetical protein compare
Atu0938 -0.7 -2.7 transcriptional regulator, MerR family compare
Atu3496 -0.6 -2.6 hypothetical protein compare
Atu3012 -0.6 -1.4 hypothetical protein compare
Atu3468 -0.6 -0.7 hypothetical protein compare
Atu0354 -0.6 -1.3 ferric uptake regulator compare
Atu0971 -0.6 -2.1 two component sensor kinase compare
Atu3397 -0.6 -3.5 hypothetical protein compare
Atu2484 -0.6 -1.2 hypothetical protein compare
Atu0142 -0.6 -1.6 cytochrome o ubiquinol oxidase subunit II compare
Atu0422 -0.6 -1.5 ABC transporter, membrane spanning protein compare
Atu3910 -0.6 -3.3 LamB/YcsF family protein compare
Atu5489 -0.6 -2.1 hypothetical protein compare
Atu4617 -0.6 -3.8 dTDP-D-glucose-4,6-dehydratase compare
Atu4614 -0.6 -3.1 glycosyltransferase compare
Atu4019 -0.6 -3.8 two component response regulator compare
Atu5125 -0.6 -1.8 GntR family transcriptional regulator compare
Atu8162 -0.6 -1.0 hypothetical protein compare
Atu3353 -0.6 -4.3 mannose-1-phosphate guanylyltransferase compare
Atu2352 -0.6 -1.5 hypothetical protein compare
Atu3287 -0.6 -2.3 thiamine biosynthesis associated protein compare
Atu5485 -0.6 -1.2 hypothetical protein compare
Atu1748 -0.6 -3.6 NIFU-like protein compare
Atu0922 -0.6 -2.8 hypothetical protein compare
Atu4613 -0.6 -4.7 glycosyltransferase compare
Atu2800 -0.6 -2.0 precorrin-3B C17-methyltransferase compare
Atu2772 -0.6 -3.3 Invasion protein A compare
Atu5475 -0.6 -1.0 hypothetical protein compare
Atu1503 -0.5 -0.8 hypothetical protein compare
Atu2017 -0.5 -0.8 hypothetical protein compare
Atu8166 -0.5 -2.1 hypothetical protein compare
Atu4618 -0.5 -3.8 dTDP-rhamnose-3,5-epimerase compare
Atu2433 -0.5 -0.9 hypothetical protein compare
Atu6045 -0.5 -0.6 replication protein C compare
Atu5106 -0.5 -0.9 DNA binding protein compare
Atu0845 -0.5 -1.8 hypothetical protein compare
Atu0687 -0.5 -1.5 hypothetical protein compare
Atu4615 -0.5 -3.8 glucose-1-phosphate thymidylyltransferase compare
Atu8138 -0.5 -1.0 hypothetical protein compare
Atu5455 -0.5 -1.3 hypothetical protein compare
Atu8052 -0.5 -0.7 hypothetical protein compare
Atu5450 -0.5 -2.2 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source 3-aminobutyric acid in Agrobacterium fabrum C58

For nitrogen source 3-aminobutyric acid across organisms