Experiment set3IT029 for Pseudomonas simiae WCS417

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18585 -7.4 -5.1 3-isopropylmalate dehydrogenase compare
PS417_01575 -6.8 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -6.6 -5.4 isopropylmalate isomerase compare
PS417_27040 -6.3 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_23805 -5.7 -7.8 acetolactate synthase 3 regulatory subunit compare
PS417_23800 -5.6 -15.3 ketol-acid reductoisomerase compare
PS417_23545 -5.5 -5.3 gamma-glutamyl kinase compare
PS417_24745 -5.4 -6.4 gamma-glutamyl phosphate reductase compare
PS417_25725 -5.4 -17.3 anthranilate synthase component I compare
PS417_25720 -5.3 -11.1 anthranilate synthase component II compare
PS417_18560 -5.3 -12.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_28220 -5.2 -3.8 LysR family transcriptional regulator compare
PS417_27795 -5.1 -2.0 orotate phosphoribosyltransferase compare
PS417_00185 -5.0 -6.0 tryptophan synthase subunit beta compare
PS417_01855 -5.0 -4.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_04420 -4.9 -13.6 histidinol dehydrogenase compare
PS417_12855 -4.9 -7.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23995 -4.8 -1.9 preprotein translocase subunit SecG compare
PS417_02005 -4.8 -12.5 glutamate synthase compare
PS417_26745 -4.8 -9.1 methionine biosynthesis protein MetW compare
PS417_04415 -4.7 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01605 -4.7 -3.2 phosphoglycerate mutase compare
PS417_23810 -4.6 -10.5 acetolactate synthase 3 catalytic subunit compare
PS417_26740 -4.6 -9.6 homoserine acetyltransferase compare
PS417_02510 -4.6 -12.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18530 -4.3 -7.3 O-succinylhomoserine sulfhydrylase compare
PS417_08125 -4.2 -2.3 prephenate dehydratase compare
PS417_23110 -4.2 -9.0 2-isopropylmalate synthase compare
PS417_01580 -4.1 -2.0 imidazole glycerol phosphate synthase compare
PS417_18595 -4.0 -2.9 3-isopropylmalate dehydratase compare
PS417_16465 -4.0 -12.6 sirohydrochlorin ferrochelatase compare
PS417_02000 -4.0 -16.1 glutamate synthase compare
PS417_03965 -3.9 -9.4 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) conserved
PS417_01850 -3.8 -13.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_12290 -3.8 -10.2 sulfite reductase compare
PS417_06375 -3.8 -2.0 deoxycytidine triphosphate deaminase compare
PS417_25715 -3.8 -6.2 anthranilate phosphoribosyltransferase compare
PS417_26730 -3.7 -2.0 pyrroline-5-carboxylate reductase compare
PS417_05595 -3.6 -7.2 ornithine carbamoyltransferase compare
PS417_03970 -3.6 -2.7 1-phosphofructokinase compare
PS417_26890 -3.6 -7.3 dihydroxy-acid dehydratase compare
PS417_00180 -3.6 -5.4 tryptophan synthase subunit alpha compare
PS417_01565 -3.4 -2.7 imidazole glycerol phosphate synthase compare
PS417_22150 -3.3 -7.0 D-mannose isomerase (EC 5.3.1.7) (from data) conserved
PS417_27195 -3.2 -3.0 N-acetylglutamate synthase compare
PS417_03975 -3.2 -14.1 FruA conserved
PS417_02415 -3.1 -4.5 phosphoserine phosphatase compare
PS417_25710 -2.9 -2.6 indole-3-glycerol-phosphate synthase compare
PS417_02485 -2.9 -7.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_12690 -2.8 -5.1 xylulose kinase compare
PS417_12695 -2.8 -8.2 mannitol dehydrogenase compare
PS417_24155 -2.5 -4.5 ATP-binding protein compare
PS417_22690 -2.5 -7.4 phosphogluconate dehydratase compare
PS417_01570 -2.4 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20125 -2.4 -4.7 phosphoribosylglycinamide formyltransferase compare
PS417_27800 -2.4 -10.3 exodeoxyribonuclease III compare
PS417_12710 -2.4 -9.4 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_20160 -2.3 -4.6 cysteine synthase compare
PS417_22680 -2.1 -4.7 chemotaxis protein CheY compare
PS417_21510 -2.1 -2.6 histidine kinase compare
PS417_20985 -2.1 -5.2 porin compare
PS417_13510 -2.1 -2.3 polyketide cyclase compare
PS417_12705 -2.1 -9.9 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_12715 -2.1 -10.4 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_23770 -2.0 -2.8 exodeoxyribonuclease V subunit alpha compare
PS417_26985 -2.0 -6.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_12725 -2.0 -6.5 AraC family transcriptional regulator conserved
PS417_22450 -1.9 -2.6 ATP-dependent DNA helicase RuvA compare
PS417_26995 -1.8 -8.1 phosphoserine phosphatase compare
PS417_27835 -1.8 -8.0 endoribonuclease compare
PS417_11430 -1.7 -6.0 EamA compare
PS417_12700 -1.7 -4.7 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) compare
PS417_24935 -1.6 -1.8 hypothetical protein compare
PS417_22060 -1.6 -2.4 hypothetical protein compare
PS417_22695 -1.6 -8.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_26040 -1.6 -4.8 malate synthase compare
PS417_00160 -1.5 -4.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_22385 -1.5 -7.8 quinolinate synthase A compare
PS417_03925 -1.5 -5.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_08230 -1.5 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01915 -1.5 -1.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08025 -1.4 -1.9 acetylornithine aminotransferase compare
PS417_14940 -1.3 -2.8 LysR family transcriptional regulator compare
PS417_23950 -1.3 -3.2 polynucleotide phosphorylase/polyadenylase compare
PS417_14980 -1.3 -1.5 universal stress protein UspA compare
PS417_26175 -1.2 -1.5 sarcosine oxidase subunit gamma compare
PS417_20665 -1.2 -7.2 hypothetical protein compare
PS417_27875 -1.2 -7.6 histidine kinase compare
PS417_23900 -1.2 -8.5 poly(A) polymerase compare
PS417_01560 -1.2 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_09725 -1.2 -7.5 transporter compare
PS417_22145 -1.2 -7.4 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_22445 -1.2 -3.5 ATP-dependent DNA helicase RuvB compare
PS417_15285 -1.2 -1.4 type VI secretion protein compare
PS417_27605 -1.1 -6.1 hypothetical protein compare
PS417_04270 -1.1 -8.1 ribonuclease G compare
PS417_01210 -1.1 -5.8 hypothetical protein compare
PS417_11445 -1.1 -3.9 enoyl-CoA hydratase compare
PS417_27610 -1.1 -4.8 hypothetical protein compare
PS417_10675 -1.1 -1.4 TetR family transcriptional regulator compare
PS417_02555 -1.0 -8.6 exoribonuclease R compare
PS417_18355 -1.0 -5.6 DNA-binding protein compare
PS417_17215 -1.0 -3.5 peptidylprolyl isomerase compare
PS417_17240 -1.0 -4.2 trigger factor compare
PS417_27865 -1.0 -4.0 LysR family transcriptional regulator compare
PS417_07620 -1.0 -2.5 beta-hexosaminidase compare
PS417_24835 -1.0 -4.6 hypothetical protein compare
PS417_16715 -1.0 -1.1 DoxX family protein compare
PS417_05650 -0.9 -3.6 leucyl-tRNA synthetase compare
PS417_12310 -0.9 -5.9 methionine synthase compare
PS417_22375 -0.9 -1.1 cold-shock protein compare
PS417_06200 -0.9 -3.6 protein-PII uridylyltransferase compare
PS417_13145 -0.9 -1.8 50S ribosomal protein L21 compare
PS417_24265 -0.9 -3.6 ABC transporter ATP-binding protein compare
PS417_06680 -0.9 -5.9 nuclease PIN compare
PS417_26510 -0.9 -5.0 5,10-methylenetetrahydrofolate reductase compare
PS417_06530 -0.9 -2.9 membrane protein compare
PS417_21210 -0.9 -2.1 amidotransferase compare
PS417_08220 -0.9 -0.9 epimerase compare
PS417_24800 -0.9 -2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_27305 -0.9 -3.8 5-formyltetrahydrofolate cyclo-ligase compare
PS417_21750 -0.9 -7.0 acetyl-CoA synthetase compare
PS417_04375 -0.8 -1.9 ABC transporter ATP-binding protein compare
PS417_13140 -0.8 -1.3 oxidoreductase compare
PS417_04365 -0.8 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06500 -0.8 -1.8 hypothetical protein compare
PS417_04585 -0.8 -2.0 hypothetical protein compare
PS417_02045 -0.8 -3.1 3-oxoacyl-ACP synthase compare
PS417_28515 -0.8 -3.1 16S rRNA methyltransferase compare
PS417_11520 -0.8 -2.9 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_12015 -0.8 -2.9 phosphoglycerate mutase compare
PS417_04410 -0.8 -1.1 hypothetical protein compare
PS417_21695 -0.8 -1.6 succinylglutamate-semialdehyde dehydrogenase compare
PS417_06175 -0.8 -3.6 cysteine sulfinate desulfinase compare
PS417_14755 -0.8 -1.6 UV damage repair endonuclease UvdE compare
PS417_27870 -0.8 -3.2 ATP-dependent DNA helicase RecG compare
PS417_08200 -0.8 -2.4 hypothetical protein compare
PS417_11345 -0.8 -2.6 membrane protein compare
PS417_27595 -0.8 -2.3 recombinase XerC compare
PS417_09235 -0.8 -1.0 molecular chaperone compare
PS417_07845 -0.8 -2.3 transcriptional regulator compare
PS417_01710 -0.8 -2.9 histidine utilization repressor compare
PS417_23775 -0.7 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_23150 -0.7 -1.9 Cro/Cl family transcriptional regulator compare
PS417_05815 -0.7 -3.3 recombinase RecA compare
PS417_06540 -0.7 -1.2 membrane protein compare
PS417_13165 -0.7 -1.4 peroxidase compare
PS417_11435 -0.7 -3.6 asparagine synthase compare
PS417_09140 -0.7 -1.9 biopolymer transporter ExbB compare
PS417_28200 -0.7 -2.4 hypothetical protein compare
PS417_27515 -0.7 -3.4 heme biosynthesis protein HemY compare
PS417_21000 -0.7 -1.8 CrfX protein compare
PS417_17565 -0.7 -2.1 branched-chain amino acid aminotransferase compare
PS417_15780 -0.7 -1.6 membrane protein compare
PS417_22380 -0.7 -2.3 hypothetical protein compare
PS417_16990 -0.7 -3.2 acyl-CoA dehydrogenase compare
PS417_17980 -0.7 -1.9 ABC transporter permease compare
PS417_23315 -0.7 -1.0 transcriptional regulator compare
PS417_05905 -0.7 -2.1 hypothetical protein compare
PS417_26445 -0.7 -1.9 ArsR family transcriptional regulator compare
PS417_17485 -0.7 -2.6 membrane protein compare
PS417_20140 -0.7 -2.4 nucleoprotein/polynucleotide-associated enzyme compare
PS417_23215 -0.7 -3.0 RNA methyltransferase compare
PS417_07115 -0.7 -4.8 L-aspartate oxidase compare
PS417_19705 -0.7 -1.4 flagellar biosynthesis regulator FlhF compare
PS417_13800 -0.7 -2.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_27535 -0.7 -4.2 chemotaxis protein CheY compare
PS417_07175 -0.7 -1.8 beta-lactamase compare
PS417_10600 -0.7 -1.9 hypothetical protein compare
PS417_17415 -0.7 -2.1 histidine kinase compare
PS417_19675 -0.7 -2.0 chemotaxis protein CheY compare
PS417_10985 -0.7 -0.9 NADH:flavin oxidoreductase compare
PS417_00475 -0.6 -3.0 membrane protein compare
PS417_03310 -0.6 -3.0 carbonate dehydratase compare
PS417_13970 -0.6 -4.0 glycerate kinase compare
PS417_23855 -0.6 -1.6 ABC transporter substrate-binding protein compare
PS417_06140 -0.6 -2.9 cold-shock protein compare
PS417_03465 -0.6 -1.3 type III secretion protein compare
PS417_27815 -0.6 -0.7 hypothetical protein compare
PS417_08195 -0.6 -3.4 hypothetical protein compare
PS417_14925 -0.6 -1.2 2-methylcitrate dehydratase compare
PS417_08380 -0.6 -3.3 ABC transporter ATP-binding protein compare
PS417_27105 -0.6 -3.7 spermidine/putrescine ABC transporter permease compare
PS417_09210 -0.6 -1.0 TetR family transcriptional regulator compare
PS417_03385 -0.6 -0.8 flavin reductase compare
PS417_27155 -0.6 -0.9 aliphatic sulfonates transport ATP-binding subunit compare
PS417_12400 -0.6 -2.5 oxidoreductase compare
PS417_04385 -0.6 -3.6 organic solvent ABC transporter substrate-binding protein compare
PS417_02105 -0.6 -1.8 acyl carrier protein compare
PS417_10025 -0.6 -1.3 bacteriophage lambda NinG family protein compare
PS417_26755 -0.6 -1.2 nucleoside-triphosphate diphosphatase compare
PS417_02705 -0.6 -1.6 urease accessory protein UreF compare
PS417_24630 -0.6 -1.5 ATP-binding protein compare
PS417_19730 -0.6 -1.4 flagellar biosynthesis protein FliR compare
PS417_17505 -0.6 -1.9 LuxR family transcriptional regulator compare
PS417_22085 -0.6 -1.1 aldehyde dehydrogenase compare
PS417_26695 -0.6 -0.9 uracil phosphoribosyltransferase compare
PS417_01955 -0.6 -4.1 peptidase compare
PS417_17495 -0.6 -3.5 multidrug ABC transporter permease compare
PS417_12355 -0.6 -1.2 magnesium chelatase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Mannose in Pseudomonas simiae WCS417

For carbon source D-Mannose across organisms