Experiment set3IT028 for Pseudomonas simiae WCS417

Compare to:

Cytidine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -8.1 -5.3 isopropylmalate isomerase compare
PS417_01855 -7.6 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_26740 -6.7 -12.8 homoserine acetyltransferase compare
PS417_04415 -6.4 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01575 -6.3 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -6.2 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_04420 -6.1 -13.1 histidinol dehydrogenase compare
PS417_23805 -6.1 -7.2 acetolactate synthase 3 regulatory subunit compare
PS417_16465 -5.9 -11.8 sirohydrochlorin ferrochelatase compare
PS417_18560 -5.8 -9.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25725 -5.7 -18.8 anthranilate synthase component I compare
PS417_02510 -5.7 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18585 -5.6 -8.7 3-isopropylmalate dehydrogenase compare
PS417_24745 -5.6 -5.4 gamma-glutamyl phosphate reductase compare
PS417_01850 -5.5 -11.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23800 -5.4 -13.1 ketol-acid reductoisomerase compare
PS417_23545 -5.4 -5.3 gamma-glutamyl kinase compare
PS417_25720 -5.1 -7.7 anthranilate synthase component II compare
PS417_23810 -5.0 -12.8 acetolactate synthase 3 catalytic subunit compare
PS417_01565 -4.9 -3.5 imidazole glycerol phosphate synthase compare
PS417_18595 -4.9 -5.4 3-isopropylmalate dehydratase compare
PS417_22690 -4.8 -7.3 phosphogluconate dehydratase compare
PS417_00185 -4.8 -5.2 tryptophan synthase subunit beta compare
PS417_23995 -4.8 -1.8 preprotein translocase subunit SecG compare
PS417_26745 -4.4 -7.0 methionine biosynthesis protein MetW compare
PS417_00180 -4.3 -4.7 tryptophan synthase subunit alpha compare
PS417_27195 -4.2 -2.1 N-acetylglutamate synthase compare
PS417_18530 -4.2 -4.6 O-succinylhomoserine sulfhydrylase compare
PS417_25710 -4.2 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_12855 -4.1 -6.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02005 -4.1 -13.5 glutamate synthase compare
PS417_25715 -4.1 -5.9 anthranilate phosphoribosyltransferase compare
PS417_01580 -4.0 -1.9 imidazole glycerol phosphate synthase compare
PS417_05595 -4.0 -8.6 ornithine carbamoyltransferase compare
PS417_23110 -3.9 -8.0 2-isopropylmalate synthase compare
PS417_24155 -3.8 -4.5 ATP-binding protein compare
PS417_27835 -3.8 -8.6 endoribonuclease compare
PS417_12290 -3.8 -9.2 sulfite reductase compare
PS417_02415 -3.7 -5.8 phosphoserine phosphatase compare
PS417_08125 -3.5 -2.3 prephenate dehydratase compare
PS417_18400 -3.5 -5.1 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_01605 -3.2 -3.2 phosphoglycerate mutase compare
PS417_02000 -3.2 -16.2 glutamate synthase compare
PS417_26890 -3.0 -5.0 dihydroxy-acid dehydratase compare
PS417_03925 -2.9 -9.8 nicotinate-nucleotide pyrophosphorylase compare
PS417_26730 -2.9 -2.2 pyrroline-5-carboxylate reductase compare
PS417_22385 -2.8 -12.0 quinolinate synthase A compare
PS417_21035 -2.7 -7.1 multidrug transporter compare
PS417_23770 -2.7 -4.9 exodeoxyribonuclease V subunit alpha compare
PS417_18395 -2.6 -3.2 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_28220 -2.6 -2.8 LysR family transcriptional regulator compare
PS417_20985 -2.6 -5.0 porin compare
PS417_06375 -2.6 -1.9 deoxycytidine triphosphate deaminase compare
PS417_01560 -2.2 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_20160 -2.2 -3.1 cysteine synthase compare
PS417_26995 -2.1 -9.1 phosphoserine phosphatase compare
PS417_20125 -2.1 -5.7 phosphoribosylglycinamide formyltransferase compare
PS417_14940 -2.1 -3.5 LysR family transcriptional regulator compare
PS417_01570 -1.9 -1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_18390 -1.9 -5.9 LacI family transcriptional regulator compare
PS417_26040 -1.8 -6.2 malate synthase compare
PS417_09725 -1.8 -9.3 transporter compare
PS417_22570 -1.7 -1.7 H-NS histone compare
PS417_26985 -1.7 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_09210 -1.4 -2.4 TetR family transcriptional regulator compare
PS417_10995 -1.4 -3.0 GntR family transcriptional regulator compare
PS417_23775 -1.4 -2.8 exodeoxyribonuclease V subunit beta compare
PS417_04595 -1.4 -3.8 cell division protein MraZ compare
PS417_27875 -1.4 -6.9 histidine kinase compare
PS417_01710 -1.3 -5.8 histidine utilization repressor compare
PS417_17415 -1.3 -3.5 histidine kinase compare
PS417_24835 -1.3 -4.6 hypothetical protein compare
PS417_10405 -1.2 -1.7 filamentous hemagglutinin compare
PS417_03100 -1.2 -1.3 pilus assembly protein compare
PS417_06205 -1.2 -7.0 methionine aminopeptidase compare
PS417_19425 -1.2 -1.2 allantoicase compare
PS417_27870 -1.2 -3.5 ATP-dependent DNA helicase RecG compare
PS417_08205 -1.2 -3.5 acetyltransferase compare
PS417_21125 -1.2 -4.8 phosphoadenosine phosphosulfate reductase compare
PS417_17455 -1.2 -3.3 cytochrome C compare
PS417_04270 -1.2 -5.2 ribonuclease G compare
PS417_23900 -1.2 -8.3 poly(A) polymerase compare
PS417_08220 -1.2 -1.1 epimerase compare
PS417_07115 -1.1 -7.6 L-aspartate oxidase compare
PS417_20665 -1.1 -5.8 hypothetical protein compare
PS417_22445 -1.1 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_17485 -1.1 -5.8 membrane protein compare
PS417_21750 -1.1 -9.0 acetyl-CoA synthetase compare
PS417_16510 -1.1 -3.5 Clp protease ClpX compare
PS417_17495 -1.1 -4.2 multidrug ABC transporter permease compare
PS417_09695 -1.1 -1.4 hydrolase compare
PS417_06145 -1.1 -1.3 hypothetical protein compare
PS417_17480 -1.0 -4.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_27010 -1.0 -5.8 threonine dehydratase compare
PS417_07170 -1.0 -3.5 hypothetical protein compare
PS417_05975 -1.0 -0.8 chemotaxis protein CheW compare
PS417_17505 -1.0 -3.2 LuxR family transcriptional regulator compare
PS417_27035 -1.0 -2.3 FAD-linked oxidase compare
PS417_22840 -1.0 -2.3 tRNA-Met compare
PS417_02895 -1.0 -2.5 precorrin-6Y C5,15-methyltransferase compare
PS417_05840 -1.0 -2.7 LuxR family transcriptional regulator compare
PS417_10675 -1.0 -1.3 TetR family transcriptional regulator compare
PS417_15095 -1.0 -1.9 hypothetical protein compare
PS417_08380 -1.0 -3.6 ABC transporter ATP-binding protein compare
PS417_11845 -0.9 -4.3 RpiR family transcriptional regulator compare
PS417_08195 -0.9 -5.1 hypothetical protein compare
PS417_17435 -0.9 -5.7 dehydrogenase compare
PS417_20855 -0.9 -1.4 hypothetical protein compare
PS417_13510 -0.9 -1.3 polyketide cyclase compare
PS417_19415 -0.9 -2.3 allantoinase compare
PS417_22210 -0.9 -1.8 AraC family transcriptional regulator compare
PS417_22870 -0.9 -2.4 lipoprotein compare
PS417_06200 -0.9 -2.7 protein-PII uridylyltransferase compare
PS417_17425 -0.9 -3.1 hypothetical protein compare
PS417_08200 -0.9 -2.3 hypothetical protein compare
PS417_08770 -0.9 -2.4 hypothetical protein compare
PS417_09705 -0.9 -3.1 hypothetical protein compare
PS417_21705 -0.9 -3.9 arginine N-succinyltransferase compare
PS417_28070 -0.9 -4.9 phosphate ABC transporter ATP-binding protein compare
PS417_05570 -0.8 -3.3 DeoR faimly transcriptional regulator compare
PS417_25920 -0.8 -4.9 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_22060 -0.8 -1.6 hypothetical protein compare
PS417_21210 -0.8 -1.8 amidotransferase compare
PS417_02805 -0.8 -1.4 urease subunit gamma compare
PS417_18055 -0.8 -1.4 general secretion pathway protein GspK compare
PS417_03560 -0.8 -1.6 GTP-binding protein compare
PS417_05365 -0.8 -1.4 FAD-binding protein compare
PS417_08225 -0.8 -3.8 acetolactate synthase compare
PS417_08245 -0.8 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27135 -0.8 -0.9 glutamine synthetase compare
PS417_16490 -0.8 -1.8 cell division protein FtsK compare
PS417_24460 -0.8 -2.5 hypothetical protein compare
PS417_02385 -0.8 -1.4 esterase compare
PS417_04410 -0.8 -0.9 hypothetical protein compare
PS417_19335 -0.7 -1.7 isochorismatase compare
PS417_10135 -0.7 -1.4 phage tail protein compare
PS417_26390 -0.7 -1.5 acyltransferase compare
PS417_09470 -0.7 -1.2 hypothetical protein compare
PS417_15780 -0.7 -2.0 membrane protein compare
PS417_01715 -0.7 -1.0 hypothetical protein compare
PS417_03245 -0.7 -4.9 omega amino acid--pyruvate aminotransferase compare
PS417_05540 -0.7 -3.2 histidine kinase compare
PS417_25940 -0.7 -4.2 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_13490 -0.7 -1.6 hypothetical protein compare
PS417_04180 -0.7 -1.9 GntR family transcriptional regulator compare
PS417_07245 -0.7 -2.4 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_08730 -0.7 -1.3 cytochrome C compare
PS417_11440 -0.7 -0.9 hypothetical protein compare
PS417_25930 -0.7 -4.2 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_13800 -0.7 -1.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08990 -0.7 -2.6 ABC transporter substrate-binding protein compare
PS417_06680 -0.7 -4.3 nuclease PIN compare
PS417_09140 -0.7 -1.6 biopolymer transporter ExbB compare
PS417_21000 -0.7 -1.2 CrfX protein compare
PS417_27595 -0.7 -2.0 recombinase XerC compare
PS417_06685 -0.7 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_17735 -0.7 -1.3 LacI family transcriptional regulator compare
PS417_17240 -0.7 -1.9 trigger factor compare
PS417_28510 -0.7 -3.2 chromosome partitioning protein compare
PS417_08320 -0.7 -2.2 metal-chelation protein CHAD compare
PS417_00845 -0.7 -1.0 transcriptional regulator compare
PS417_02360 -0.7 -2.1 nitrate reductase compare
PS417_17420 -0.7 -4.3 ethanol oxidation regulatory protein ercA (from data) compare
PS417_13165 -0.6 -1.2 peroxidase compare
PS417_19965 -0.6 -4.9 histidine kinase compare
PS417_27205 -0.6 -2.0 adenylate cyclase compare
PS417_05820 -0.6 -2.2 recombinase RecX compare
PS417_22450 -0.6 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_05815 -0.6 -3.3 recombinase RecA compare
PS417_27305 -0.6 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_27690 -0.6 -2.2 XRE family transcriptional regulator compare
PS417_17215 -0.6 -2.5 peptidylprolyl isomerase compare
PS417_25290 -0.6 -1.3 hypothetical protein compare
PS417_05165 -0.6 -1.4 cytosol aminopeptidase compare
PS417_12310 -0.6 -3.4 methionine synthase compare
PS417_21070 -0.6 -1.5 aconitate hydratase compare
PS417_15305 -0.6 -1.4 type VI secretion protein compare
PS417_26990 -0.6 -0.9 RNA pyrophosphohydrolase compare
PS417_27155 -0.6 -0.7 aliphatic sulfonates transport ATP-binding subunit compare
PS417_10275 -0.6 -1.6 histidine kinase compare
PS417_28140 -0.6 -1.7 asparaginase compare
PS417_10305 -0.6 -1.7 hypothetical protein compare
PS417_15725 -0.6 -2.5 nitrate/nitrite transporter NarK compare
PS417_12730 -0.6 -1.1 glycosyltransferase compare
PS417_12840 -0.6 -1.9 TetR family transcriptional regulator compare
PS417_03200 -0.6 -1.9 ArsR family transcriptional regulator compare
PS417_27910 -0.6 -1.8 PppA compare
PS417_24775 -0.6 -2.5 dehydratase compare
PS417_08580 -0.6 -3.1 histidine kinase compare
PS417_16515 -0.6 -1.4 Clp protease ClpS compare
PS417_19420 -0.6 -3.4 OHCU decarboxylase compare
PS417_00295 -0.6 -2.7 hypothetical protein compare
PS417_15650 -0.6 -1.1 glutamine amidotransferase compare
PS417_01885 -0.6 -1.9 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_12375 -0.6 -1.5 serine/threonine protein phosphatase compare
PS417_21695 -0.6 -1.1 succinylglutamate-semialdehyde dehydrogenase compare
PS417_17565 -0.6 -1.8 branched-chain amino acid aminotransferase compare
PS417_02150 -0.6 -3.5 potassium/proton antiporter compare
PS417_16570 -0.6 -3.4 isocitrate lyase compare
PS417_17305 -0.6 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source Cytidine across organisms