Experiment set3IT027 for Agrobacterium fabrum C58

Compare to:

6-aminocaproic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu3707 -4.6 -4.7 phosphoserine aminotransferase compare
Atu0039 -4.4 -3.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu3469 -4.2 -4.0 phosphoglyceromutase compare
Atu3706 -3.9 -12.4 D-3-phosphoglycerate dehydrogenase compare
Atu1359 -3.5 -2.0 dnaK deletion suppressor protein compare
Atu0679 -3.4 -8.1 ATP phosphoribosyltransferase compare
Atu1750 -3.3 -7.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu1030 -3.3 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0678 -3.3 -9.5 histidyl-tRNA synthetase compare
Atu2040 -3.2 -7.6 phosphoserine phosphatase compare
Atu1446 -3.1 -2.6 two component response regulator compare
Atu0035 -3.0 -10.6 phosphoenolpyruvate carboxykinase compare
Atu5115 -3.0 -2.0 hypothetical protein compare
Atu0043 -3.0 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu0099 -2.9 -15.5 prephenate dehydratase compare
Atu0537 -2.6 -8.3 histidinol dehydrogenase compare
Atu3739 -2.5 -4.5 phosphoglycerate kinase compare
Atu2650 -2.3 -12.8 glycerol-3-phosphate dehydrogenase compare
Atu1140 -2.2 -5.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0041 -2.2 -3.1 glutamine amidotransferase compare
Atu0017 -2.2 -4.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1308 -2.1 -5.9 aspartate carbamoyl transferase catalytic subunit compare
Atu1688 -2.1 -8.9 indole-3-glycerol-phosphate synthase compare
Atu1687 -2.1 -10.5 anthranilate phosphoribosyltransferase compare
Atu0399 -2.1 -7.6 dihydroorotase compare
Atu2289 -2.1 -14.9 anthranilate synthase component I and II compare
Atu0400 -2.0 -5.1 orotate phosphoribosyltransferase compare
Atu1445 -2.0 -7.6 two component sensor kinase compare
Atu0777 -2.0 -1.6 hypothetical protein compare
Atu0486 -2.0 -5.8 dihydroorotate dehydrogenase compare
Atu1307 -2.0 -8.0 dihydroorotase compare
Atu3740 -2.0 -8.2 fructose bisphosphate aldolase compare
Atu5164 -1.9 -0.8 type IV secretion protein AvhB3 compare
Atu3293 -1.9 -6.7 D-amino acid dehydrogenase small subunit compare
Atu4166 -1.8 -3.6 UDP-glucose 4-epimerase compare
Atu2439 -1.8 -2.3 hypothetical protein compare
Atu1141 -1.8 -6.3 Phosphoribosylglycinamide synthetase compare
Atu2791 -1.8 -8.6 3-isopropylmalate dehydrogenase compare
Atu1620 -1.7 -9.4 triosephosphate isomerase compare
Atu3300 -1.7 -9.5 aminotransferase compare
Atu4711 -1.7 -6.0 two component sensor kinase compare
Atu3763 -1.7 -2.0 hypothetical protein compare
Atu2264 -1.7 -9.5 2-isopropylmalate synthase compare
Atu2036 -1.7 -11.9 acetolactate synthase III, large subunit compare
Atu0332 -1.7 -7.9 RNA polymerase sigma-54 factor compare
Atu0346 -1.6 -5.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu5034 -1.6 -1.9 hypothetical protein compare
Atu0647 -1.6 -6.5 phosphoribosylamine--glycine ligase compare
Atu1075 -1.6 -6.5 amidophosphoribosyltransferase compare
Atu4773 -1.6 -2.0 two component response regulator compare
Atu2709 -1.6 -10.8 3-isopropylmalate dehydratase, large subunit compare
Atu4505 -1.5 -8.9 LacI family transcriptional regulator compare
Atu5107 -1.5 -1.4 hypothetical protein compare
Atu0030 -1.5 -1.9 phosphocarrier protein HPr compare
Atu1588 -1.5 -8.2 homoserine dehydrogenase compare
Atu0298 -1.5 -5.4 orotidine 5 compare
Atu3754 -1.5 -6.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2718 -1.5 -6.3 homoserine O-succinyltransferase compare
Atu3008 -1.4 -1.4 hypothetical protein compare
Atu2747 -1.4 -6.6 hypothetical protein compare
Atu0040 -1.4 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4614 -1.4 -7.4 glycosyltransferase compare
Atu1205 -1.4 -7.9 threonine dehydratase compare
Atu1163 -1.4 -2.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1850 -1.3 -4.6 phosphoribosylformylglycinamidine synthetase II compare
Atu4317 -1.3 -3.1 TetR family transcriptional regulator compare
Atu0038 -1.3 -4.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4618 -1.3 -9.0 dTDP-rhamnose-3,5-epimerase compare
Atu0086 -1.3 -1.5 ribosome-binding factor A compare
Atu0846 -1.3 -4.4 transcriptional regulator, MarR family compare
Atu2155 -1.2 -10.2 methionine synthase compare
Atu6098 -1.2 -0.5 transcriptional regulator, HTH family compare
Atu8054 -1.2 -0.5 hypothetical protein compare
Atu1062 -1.2 -2.0 phosphatidylserine synthase compare
Atu1845 -1.2 -3.5 phosphoribosylformylglycinamidine synthase I compare
Atu3908 -1.2 -7.6 GntR family transcriptional regulator compare
Atu0723 -1.2 -2.1 FAD dependent oxidoreductase compare
Atu4617 -1.2 -7.1 dTDP-D-glucose-4,6-dehydratase compare
Atu2207 -1.1 -2.2 two component sensor kinase compare
Atu3353 -1.1 -7.3 mannose-1-phosphate guanylyltransferase compare
Atu0432 -1.1 -4.3 O-succinylhomoserine sulfhydrylase compare
Atu1844 -1.1 -1.9 Phosphoribosylformylglycinamidine synthetase compare
Atu5142 -1.1 -0.8 hypothetical protein compare
Atu5088 -1.1 -1.2 hypothetical protein compare
Atu1462 -1.1 -7.5 glycine cleavage system protein P2 compare
Atu3301 -1.1 -6.8 short-chain alcohol dehydrogenase compare
Atu2790 -1.1 -2.4 3-isopropylmalate dehydratase, small subunit compare
Atu0803 -1.1 -7.9 pyruvate,orthophosphate dikinase compare
Atu4613 -1.1 -8.5 glycosyltransferase compare
Atu3755 -1.1 -4.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu6114 -1.1 -1.2 hypothetical protein compare
Atu2376 -1.0 -1.3 hypothetical protein compare
Atu3468 -1.0 -1.1 hypothetical protein compare
Atu4615 -1.0 -5.5 glucose-1-phosphate thymidylyltransferase compare
Atu5450 -1.0 -2.1 hypothetical protein compare
Atu3885 -1.0 -4.2 inositol monophosphatase compare
Atu0536 -1.0 -4.3 hypothetical protein compare
Atu2163 -1.0 -1.8 hypothetical protein compare
Atu8012 -1.0 -1.6 hypothetical protein compare
Atu2183 -1.0 -6.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0031 -0.9 -1.3 PTS system, IIA component compare
Atu5163 -0.9 -1.4 type IV secretion protein AvhB2 compare
Atu5144 -0.9 -2.4 putative peptidase compare
Atu3311 -0.9 -6.5 phosphomannose isomerase compare
Atu0026 -0.9 -1.0 hypothetical protein compare
Atu3075 -0.9 -6.4 TetR family transcriptional regulator compare
Atu1463 -0.9 -3.8 glycine cleavage system component H compare
Atu8046 -0.8 -1.2 hypothetical protein compare
Atu1354 -0.8 -1.3 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2442 -0.8 -2.2 hypothetical protein compare
Atu3012 -0.8 -1.5 hypothetical protein compare
Atu1503 -0.8 -1.1 hypothetical protein compare
Atu2683 -0.8 -1.6 hypothetical protein compare
Atu5108 -0.8 -3.3 conjugal transfer coupling protein TraG compare
Atu8052 -0.8 -0.6 hypothetical protein compare
Atu6067 -0.8 -1.9 conserved hypothetical protein compare
Atu4173 -0.8 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu1464 -0.8 -4.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu5441 -0.8 -2.9 ABC transporter substrate binding protein compare
Atu2123 -0.8 -3.9 methylenetetrahydrofolate reductase compare
Atu3120 -0.8 -1.4 hypothetical protein compare
Atu1846 -0.8 -0.9 hypothetical protein compare
Atu3006 -0.8 -2.4 hypothetical protein compare
Atu5104 -0.8 -2.1 hypothetical protein compare
Atu0361 -0.7 -1.7 transcriptional regulator compare
Atu3291 -0.7 -4.1 Lpr family transcriptional regulator compare
Atu6112 -0.7 -1.4 conserved hypothetical protein compare
Atu3572 -0.7 -3.6 transcriptional regulator compare
Atu2758 -0.7 -4.5 ammonium transporter compare
Atu6181 -0.7 -1.5 virA/G regulated topoisomerase compare
Atu5486 -0.7 -1.1 hypothetical protein compare
Atu5159 -0.7 -1.1 hypothetical protein compare
Atu8203 -0.7 -1.3 hypothetical protein compare
Atu2777 -0.7 -3.9 hypothetical protein compare
Atu5462 -0.7 -1.9 ABC transporter nucleotide binding/ATPase compare
Atu1774 -0.7 -4.3 ABC transporter, substrate binding protein (peptide) compare
Atu4217 -0.6 -1.6 TetR family transcriptional regulator compare
Atu1028 -0.6 -1.9 hypothetical protein compare
Atu1444 -0.6 -2.8 nitrogen regulation protein compare
Atu1457 -0.6 -1.8 hypothetical protein compare
Atu6095 -0.6 -1.8 conserved hypothetical protein compare
Atu1881 -0.6 -4.0 ABC transporter, membrane spanning protein (amino acid) compare
Atu8034 -0.6 -2.3 hypothetical protein compare
Atu5470 -0.6 -1.0 hypothetical protein compare
Atu5515 -0.6 -1.5 hypothetical protein compare
Atu5114 -0.6 -1.1 hypothetical protein compare
Atu6009 -0.6 -1.3 indole-3-lactate synthase compare
Atu6155 -0.6 -1.9 conserved hypothetical protein compare
Atu5157 -0.6 -1.0 hypothetical protein compare
Atu2662 -0.6 -1.0 acetyltransferase compare
Atu0893 -0.6 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu4407 -0.6 -1.7 periplasmic nitrate reductase, NapD protein compare
Atu8191 -0.6 -1.4 hypothetical protein compare
Atu1470 -0.6 -0.8 Camphor resistance protein compare
Atu0885 -0.6 -1.5 hypothetical protein compare
Atu5446 -0.6 -2.2 cultivar specificity protein W78 compare
Atu3298 -0.6 -3.8 C4-dicarboxylate transporter DctA compare
Atu3296 -0.6 -3.2 two component response regulator for C4-dicarboxylate transport compare
Atu3910 -0.6 -2.6 LamB/YcsF family protein compare
Atu3799 -0.6 -3.4 GntR family transcriptional regulator compare
Atu6109 -0.6 -1.3 conserved hypothetical protein compare
Atu5095 -0.6 -1.6 hypothetical protein compare
Atu3001 -0.6 -1.3 hypothetical protein compare
Atu4405 -0.6 -2.1 periplasmic nitrate reductase NapE compare
Atu5181 -0.6 -2.2 short chain dehydrogenase compare
Atu0190 -0.6 -2.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2757 -0.6 -3.0 nitrogen regulatory protein PII compare
Atu0322 -0.5 -3.0 enoyl CoA hydratase compare
Atu1754 -0.5 -1.6 hypothetical protein compare
Atu3009 -0.5 -0.6 exopolysaccharide production protein compare
Atu1570 -0.5 -0.6 hypothetical protein compare
Atu2344 -0.5 -1.8 lactoylglutathione lyase compare
Atu1577 -0.5 -3.0 ABC transporter, substrate binding protein (amino acid) compare
Atu0188 -0.5 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu1369 -0.5 -2.7 HIT family protein compare
Atu0895 -0.5 -1.3 ABC transporter, substrate binding protein compare
Atu8047 -0.5 -0.9 hypothetical protein compare
Atu6086 -0.5 -1.5 ABC transporter, membrane spanning protein (nitrate/sulfonate) compare
Atu3297 -0.5 -3.5 two component sensor kinase for C4-dicarboxylate transport compare
Atu4884 -0.5 -1.9 hypothetical protein compare
Atu1439 -0.5 -1.1 hypothetical protein compare
Atu2772 -0.5 -2.6 Invasion protein A compare
Atu5425 -0.5 -1.7 2-hydroxychromene-2-carboxylate isomerase compare
Atu5085 -0.5 -2.3 metallo-beta-lactamase compare
Atu5025 -0.5 -2.1 hypothetical protein compare
Atu5422 -0.5 -2.5 ABC transporter membrane spanning protein (putrescine) compare
Atu4093 -0.5 -1.5 hypothetical protein compare
Atu5484 -0.5 -2.0 hypothetical protein compare
Atu2349 -0.5 -1.2 hypothetical protein compare
Atu5517 -0.5 -0.9 hypothetical protein compare
Atu2710 -0.5 -2.8 hypothetical protein compare
Atu1252 -0.5 -1.5 hypothetical protein compare
Atu3912 -0.5 -3.5 hypothetical protein compare
Atu6111 -0.5 -1.6 conserved hypothetical protein compare
Atu2398 -0.5 -3.1 urease accessory protein compare
Atu5468 -0.5 -0.8 hypothetical protein compare
Atu0894 -0.5 -1.5 ABC transporter, membrane spanning protein compare
Atu2433 -0.5 -0.8 hypothetical protein compare
Atu3292 -0.5 -3.3 alanine racemase compare
Atu0627 -0.5 -2.2 carboxymethylenebutenolidase compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source e-Amino-N-Caproic Acid in Agrobacterium fabrum C58

For nitrogen source e-Amino-N-Caproic Acid across organisms